scholarly journals Genome-Wide Analysis of Basic/Helix-Loop-Helix Transcription Factor Family in Rice and Arabidopsis

2006 ◽  
Vol 141 (4) ◽  
pp. 1167-1184 ◽  
Author(s):  
Xiaoxing Li ◽  
Xuepeng Duan ◽  
Haixiong Jiang ◽  
Yujin Sun ◽  
Yuanping Tang ◽  
...  
Keyword(s):  
Transcription Factor ◽  
Transcription Factor Family ◽  
Genome Wide Analysis ◽  
Basic Helix Loop Helix ◽  
Helix Loop Helix ◽  
Genome Wide

scholarly journals Genome-Wide Identification and Analysis of the Chicken Basic Helix-Loop-Helix Factors

2010 ◽  
Vol 2010 ◽  
pp. 1-12 ◽  
Author(s):  
Wu-yi Liu ◽  
Chun-jiang Zhao
Keyword(s):  
Transcription Factor ◽  
Phylogenetic Analyses ◽  
Bhlh Transcription Factor ◽  
Transcription Factor Family ◽  
Early Date ◽  
Basic Helix Loop Helix ◽  
Helix Loop Helix ◽  
Genome Wide ◽  
A Genome ◽  
Wide Range

Members of the basic helix-loop-helix (bHLH) family of transcription factors play important roles in a wide range of developmental processes. In this study, we conducted a genome-wide survey using the chicken (Gallus gallus) genomic database, and identified 104 bHLH sequences belonging to 42 gene families in an effort to characterize the chicken bHLH transcription factor family. Phylogenetic analyses revealed that chicken has 50, 21, 15, 4, 8, and 3 bHLH members in groups A, B, C, D, E, and F, respectively, while three members belonging to none of these groups were classified as ‘‘orphans’’. A comparison between chicken and human bHLH repertoires suggested that both organisms have a number of lineage-specific bHLH members in the proteomes. Chromosome distribution patterns and phylogenetic analyses strongly suggest that the bHLH members should have arisen through gene duplication at an early date. Gene Ontology (GO) enrichment statistics showed 51 top GO annotations of biological processes counted in the frequency. The present study deepens our understanding of the chicken bHLH transcription factor family and provides much useful information for further studies using chicken as a model system.

scholarly journals Genome-wide analysis of basic helix-loop-helix superfamily members in peach

PLoS ONE ◽  
2018 ◽  
Vol 13 (4) ◽  
pp. e0195974 ◽  
Author(s):  
Chunhua Zhang ◽  
Ruchao Feng ◽  
Ruijuan Ma ◽  
Zhijun Shen ◽  
Zhixiang Cai ◽  
...  
Keyword(s):  
Genome Wide Analysis ◽  
Basic Helix Loop Helix ◽  
Helix Loop Helix ◽  
Genome Wide

Identification and analysis of the mouse basic/Helix-Loop-Helix transcription factor family

2006 ◽  
Vol 350 (3) ◽  
pp. 648-656 ◽  
Author(s):  
Jing Li ◽  
Qi Liu ◽  
Mengsheng Qiu ◽  
Yuchun Pan ◽  
Yixue Li ◽  
...  
Keyword(s):  
Transcription Factor ◽  
Transcription Factor Family ◽  
Basic Helix Loop Helix ◽  
Helix Loop Helix
Sign in / Sign up

Export Citation Format

Share Document