Computationally efficient algorithms for Brownian dynamics simulation of long flexible macromolecules modeled as bead-rod chains

Mahdy Malekzadeh Moghani; Bamin Khomami

doi:10.1103/physrevfluids.2.023303

Computationally efficient algorithms for Brownian dynamics simulation of long flexible macromolecules modeled as bead-rod chains

Physical Review Fluids ◽

10.1103/physrevfluids.2.023303 ◽

2017 ◽

Vol 2 (2) ◽

Cited By ~ 5

Author(s):

Mahdy Malekzadeh Moghani ◽

Bamin Khomami

Keyword(s):

Brownian Dynamics ◽

Efficient Algorithms ◽

Dynamics Simulation ◽

Brownian Dynamics Simulation ◽

Computationally Efficient ◽

Computationally Efficient Algorithms

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Computationally efficient algorithms for incorporation of hydrodynamic and excluded volume interactions in Brownian dynamics simulations: A comparative study of the Krylov subspace and Chebyshev based techniques

The Journal of Chemical Physics ◽

10.1063/1.4873999 ◽

2014 ◽

Vol 140 (18) ◽

pp. 184903 ◽

Cited By ~ 20

Author(s):

Amir Saadat ◽

Bamin Khomami

Keyword(s):

Comparative Study ◽

Brownian Dynamics ◽

Krylov Subspace ◽

Efficient Algorithms ◽

Excluded Volume ◽

Computationally Efficient ◽

Dynamics Simulations ◽

Computationally Efficient Algorithms ◽

Brownian Dynamics Simulations

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Induced permittivity increment of electrorheological fluids in an applied electric field in association with chain formation: A Brownian dynamics simulation study

Physical Review E ◽

10.1103/physreve.103.062608 ◽

2021 ◽

Vol 103 (6) ◽

Author(s):

Dávid Fertig ◽

Dezső Boda ◽

István Szalai

Keyword(s):

Electric Field ◽

Simulation Study ◽

Applied Electric Field ◽

Brownian Dynamics ◽

Electrorheological Fluids ◽

Dynamics Simulation ◽

Brownian Dynamics Simulation ◽

Chain Formation

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Brownian dynamics simulation of diffusion‐influenced bimolecular reactions

The Journal of Chemical Physics ◽

10.1063/1.446900 ◽

1984 ◽

Vol 80 (4) ◽

pp. 1517-1524 ◽

Cited By ~ 284

Author(s):

Scott H. Northrup ◽

Stuart A. Allison ◽

J. Andrew McCammon

Keyword(s):

Brownian Dynamics ◽

Dynamics Simulation ◽

Brownian Dynamics Simulation ◽

Bimolecular Reactions

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An efficient algorithm for the brownian dynamics simulation of aggregation

Computer Physics Communications ◽

10.1016/0010-4655(86)90229-8 ◽

1986 ◽

Vol 42 (1) ◽

pp. 43-49 ◽

Cited By ~ 4

Author(s):

Francis Sullivan ◽

Raymond D. Mountain

Keyword(s):

Efficient Algorithm ◽

Brownian Dynamics ◽

Dynamics Simulation ◽

Brownian Dynamics Simulation

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Off-lattice Brownian dynamics simulation of wormlike micelles: The dependence of the mean contour length on concentration

The Journal of Chemical Physics ◽

10.1063/1.480322 ◽

1999 ◽

Vol 111 (21) ◽

pp. 9859-9863 ◽

Cited By ~ 7

Author(s):

Yannick Rouault

Keyword(s):

Brownian Dynamics ◽

Dynamics Simulation ◽

Wormlike Micelles ◽

Contour Length ◽

Brownian Dynamics Simulation ◽

The Mean

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Sediment formation by Brownian dynamics simulation: Effect of colloidal and hydrodynamic interactions on the sediment structure

The Journal of Chemical Physics ◽

10.1063/1.450879 ◽

1986 ◽

Vol 85 (7) ◽

pp. 4079-4086 ◽

Cited By ~ 53

Author(s):

Geoffrey C. Ansell ◽

Eric Dickinson

Keyword(s):

Brownian Dynamics ◽

Dynamics Simulation ◽

Hydrodynamic Interactions ◽

Brownian Dynamics Simulation ◽

Sediment Structure ◽

Sediment Formation

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Brownian dynamics simulation of protein diffusion in crowded environments

10.1063/1.4794626 ◽

2013 ◽

Cited By ~ 1

Author(s):

Paolo Mereghetti ◽

Rebecca C. Wade

Keyword(s):

Brownian Dynamics ◽

Dynamics Simulation ◽

Protein Diffusion ◽

Brownian Dynamics Simulation ◽

Crowded Environments

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Brownian dynamics simulation of nucleation and growth processes at electrode surfaces: instantaneous nucleation

Journal of Electroanalytical Chemistry ◽

10.1016/j.jelechem.2004.02.017 ◽

2004 ◽

Vol 569 (1) ◽

pp. 95-109 ◽

Cited By ~ 4

Author(s):

Miquel Trias ◽

Eudald Vilaseca

Keyword(s):

Brownian Dynamics ◽

Nucleation And Growth ◽

Dynamics Simulation ◽

Brownian Dynamics Simulation ◽

Growth Processes ◽

Electrode Surfaces ◽

Instantaneous Nucleation

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Brownian dynamics simulation of a polymer molecule in solution under elongational flow

The Journal of Chemical Physics ◽

10.1063/1.475531 ◽

1998 ◽

Vol 108 (4) ◽

pp. 1610-1617 ◽

Cited By ~ 27

Author(s):

U. S. Agarwal ◽

Rohit Bhargava ◽

R. A. Mashelkar

Keyword(s):

Brownian Dynamics ◽

Elongational Flow ◽

Polymer Molecule ◽

Dynamics Simulation ◽

Brownian Dynamics Simulation

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Coagulation rates in concentrated colloidal suspensions studied by Brownian dynamics simulation

Physical Chemistry Chemical Physics ◽

10.1039/a904615a ◽

1999 ◽

Vol 1 (18) ◽

pp. 4429-4436 ◽

Cited By ~ 17

Author(s):

Markus Hütter

Keyword(s):

Brownian Dynamics ◽

Colloidal Suspensions ◽

Dynamics Simulation ◽

Brownian Dynamics Simulation

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