scholarly journals Combined scanning tunneling microscopy and kinetic Monte Carlo study on kinetics of Cu-coordinated pyridyl-porphyrin supramolecular self-assembly on a Au(111) surface

2011 ◽  
Vol 84 (12) ◽  
Author(s):  
Yang Li ◽  
Nian Lin
2021 ◽  
Author(s):  
◽  
David John Williamson

<p>A Kinetic Monte Carlo (KMC) method was developed to model homoepitaxy and grain boundary propagation on a (111) surface. Barrier energies were calculated using the Nudged Elastic Band (NEB) technique. A recently reported inertial relaxation technique named FIRE (the Fast Inertial Relaxation Engine) was used to relax the NEB images. Both the Lennard-Jones potential and a Sutton-Chen Iridium potential were used and compared. A doubly-refined lattice mesh was developed to incorporate atoms in Face-Centred-Cubic (FCC) and Hexagonal-Close-Packed (HCP) sites as well as atoms in decorated row sites (i.e. supported by 4 atoms). A look-up table was developed to identify hops in the KMC algorithm. The KMC results show that a small difference in energy barriers between FCC and HCP sites on the substrate can cause a substantial bias in the direction of grain boundary propagation. We also investigated the effect of the geometry of the grain boundary on its propagation, as well as the atomistic processes involved in grain boundary propagation and the merger of grain boundaries. Our deposition simulations produced islands with loosely triangular envelopes, where FCC islands are rotated 180° with respect to HCP islands. The results are similar to scanning tunneling microscopy (STM) images of Iridium deposition, although lack of computing power forced us to use a high deposition rate and this caused some differences.</p>


2011 ◽  
Vol 25 (14) ◽  
pp. 1889-1898 ◽  
Author(s):  
DARWIN B. PUTUNGAN ◽  
HENRY J. RAMOS ◽  
FENG-CHUAN CHUANG ◽  
MARVIN A. ALBAO

A growth model for co-deposition of Sn and In on Si (100) at room-temperature was simulated using Kinetic Monte Carlo methods to shed light on the chemical selectivity and lack of dimer ordering seen in [Jure et al., Appl. Surf. Sci.162, 638 (2000)], a Scanning Tunneling Microscopy (STM) study. In this work, the experimental observation that the number of mixed In – Sn dimers is unaffected even when the relative flux rates are adjusted to favor In over Sn (by 100:1) — a manifestation of some sort of chemical selectivity — was investigated. Our simulations reveal that this phenomenon is ultimately related to the fact that the number of Sn -terminated chains is largely unaffected by the relative flux rate. Finally, we found that the attraction between metal dimers (whether of the same or different species) within a Si dimer row has only negligible effect on the apparent lack of dimer ordering seen in the STM study. Instead, dimer ordering is controlled by the detachment barriers in dimer-terminated islands.


2021 ◽  
Author(s):  
◽  
David John Williamson

<p>A Kinetic Monte Carlo (KMC) method was developed to model homoepitaxy and grain boundary propagation on a (111) surface. Barrier energies were calculated using the Nudged Elastic Band (NEB) technique. A recently reported inertial relaxation technique named FIRE (the Fast Inertial Relaxation Engine) was used to relax the NEB images. Both the Lennard-Jones potential and a Sutton-Chen Iridium potential were used and compared. A doubly-refined lattice mesh was developed to incorporate atoms in Face-Centred-Cubic (FCC) and Hexagonal-Close-Packed (HCP) sites as well as atoms in decorated row sites (i.e. supported by 4 atoms). A look-up table was developed to identify hops in the KMC algorithm. The KMC results show that a small difference in energy barriers between FCC and HCP sites on the substrate can cause a substantial bias in the direction of grain boundary propagation. We also investigated the effect of the geometry of the grain boundary on its propagation, as well as the atomistic processes involved in grain boundary propagation and the merger of grain boundaries. Our deposition simulations produced islands with loosely triangular envelopes, where FCC islands are rotated 180° with respect to HCP islands. The results are similar to scanning tunneling microscopy (STM) images of Iridium deposition, although lack of computing power forced us to use a high deposition rate and this caused some differences.</p>


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