scholarly journals Leveraging the Mouse Genome for Gene Prediction in Human: From Whole-Genome Shotgun Reads to a Global Synteny Map

2003 ◽  
Vol 13 (1) ◽  
pp. 46-54 ◽  
Author(s):  
P. Flicek
Keyword(s):  
Mouse Genome ◽  
Gene Prediction ◽  
Whole Genome Shotgun ◽  
Whole Genome

scholarly journals Harvesting the Mouse Genome

2002 ◽  
Vol 3 (4) ◽  
pp. 319-324 ◽  
Author(s):  
Marc Botcherby
Keyword(s):  
Comparative Analysis ◽  
Mouse Strain ◽  
Mouse Genome ◽  
Whole Genome Shotgun ◽  
Targeted Sequencing ◽  
Whole Genome ◽  
The Subject ◽  
Finished Sequence

The sequencing of the black 6 mouse (strain C57Bl/6) has reached an important juncture. The BAC fingerprint map is almost complete, the BACs have been endsequenced and a seven-fold coverage whole-genome shotgun has been assembled. Now the BAC-by-BAC sequencing phase is under way and in-depth comparative analysis can be carried out on regions that have been the subject of targeted sequencing. This paper reviews the progress so far and looks forward to the promises of finished sequence.

Sa603 AUTISM-SPECIFIC MICROBIAL SIGNATURES REVEALED BY WHOLE GENOME SHOTGUN SEQUENCING

2021 ◽  
Vol 160 (6) ◽  
pp. S-569
Author(s):  
Manoj Dadlani ◽  
Kelly Moffat ◽  
Huai Li ◽  
Xin Zhou ◽  
Rita Colwell
Keyword(s):  
Shotgun Sequencing ◽  
Whole Genome Shotgun ◽  
Whole Genome ◽  
Whole Genome Shotgun Sequencing

scholarly journals Draft Genome Sequences of Six Skin Isolates of Streptococcus pyogenes

2018 ◽  
Vol 6 (26) ◽  
Author(s):  
Zhong Liang ◽  
Melissa Stephens ◽  
Victoria A. Ploplis ◽  
Shaun W. Lee ◽  
Francis J. Castellino
Keyword(s):  
Streptococcus Pyogenes ◽  
Draft Genome ◽  
Whole Genome Shotgun ◽  
Whole Genome ◽  
Genome Sequences ◽  
Bottom Up ◽  
Content Type

Whole-genome shotgun sequences and bottom-up assembly of contigs of six skin isolates of Streptococcus pyogenes, viz., NS88.3 (emm98.1), NS223 (emm91), NS455 (emm52), SS1448 (emm86.2), SS1572 (emm223), and SS1574 (emm224), are presented here. All contigs were annotated, and the gene arrangements and the inferred proteins were consistent with a pattern D classification.

scholarly journals Whole-Genome Shotgun Sequencing of the Sulfur-Oxidizing Chemoautotroph Tetrathiobacter kashmirensis

2011 ◽  
Vol 193 (19) ◽  
pp. 5553-5554 ◽  
Author(s):  
W. Ghosh ◽  
A. George ◽  
A. Agarwal ◽  
P. Raj ◽  
M. Alam ◽  
...  
Keyword(s):  
Shotgun Sequencing ◽  
Whole Genome Shotgun ◽  
Whole Genome ◽  
Whole Genome Shotgun Sequencing ◽  
Sulfur Oxidizing

scholarly journals Whole-Genome Shotgun Sequence of Halomonas sp. Strain SBS 10, Isolated from a Hypersaline Lake in India

2020 ◽  
Vol 9 (1) ◽  
Author(s):  
Bijayendra Kushwaha ◽  
Guru Prasad Sharma ◽  
Anshul Sharma ◽  
Prem Shankar ◽  
Anjali Geethadevi ◽  
...  
Keyword(s):  
Genome Size ◽  
Gene Clusters ◽  
Halophilic Bacterium ◽  
Whole Genome Shotgun ◽  
Hypersaline Lake ◽  
Whole Genome ◽  
Shotgun Sequence ◽  
Whole Genome Shotgun Sequence ◽  
Moderately Halophilic Bacterium ◽  
Genome Shotgun Sequence

The whole-genome shotgun sequence of a moderately halophilic bacterium, Halomonas sp. strain SBS 10, was assembled and studied. The assembled genome size was 1.5 Mb, with a G+C content of 63.6%. The genome sequence of this Halomonas sp. SBS 10 isolate will be valuable in understanding gene clusters and functions involved in the adaptability of this bacterium to hypersaline conditions.

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