Large-scale identification of protein-protein interaction of Escherichia coli K-12

M. Arifuzzaman

doi:10.1101/gr.4527806

Large-scale identification of protein-protein interaction of Escherichia coli K-12

Genome Research ◽

10.1101/gr.4527806 ◽

2006 ◽

Vol 16 (5) ◽

pp. 686-691 ◽

Cited By ~ 280

Author(s):

M. Arifuzzaman

Keyword(s):

Escherichia Coli ◽

Protein Interaction ◽

Large Scale ◽

Protein Protein Interaction ◽

K 12

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Faculty Opinions recommendation of Large-scale protein-protein interaction analysis in Arabidopsis mesophyll protoplasts by split firefly luciferase complementation.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.13407987.14778091 ◽

2011 ◽

Author(s):

Daniel Chamovitz

Keyword(s):

Protein Interaction ◽

Large Scale ◽

Interaction Analysis ◽

Firefly Luciferase ◽

Mesophyll Protoplasts ◽

Protein Protein Interaction

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Large-Scale Protein-Protein Interaction Analysis in Arabidopsis Mesophyll Protoplasts by Split Firefly Luciferase Complementation

PLoS ONE ◽

10.1371/journal.pone.0027364 ◽

2011 ◽

Vol 6 (11) ◽

pp. e27364 ◽

Cited By ~ 35

Author(s):

Jian-Feng Li ◽

Jenifer Bush ◽

Yan Xiong ◽

Lei Li ◽

Matthew McCormack

Keyword(s):

Protein Interaction ◽

Large Scale ◽

Interaction Analysis ◽

Firefly Luciferase ◽

Mesophyll Protoplasts ◽

Protein Protein Interaction

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Epitope-targeted proteome analysis: towards a large-scale automated protein?protein-interaction mapping utilizing synthetic peptide arrays

Analytical and Bioanalytical Chemistry ◽

10.1007/s00216-003-1876-3 ◽

2003 ◽

Vol 376 (7) ◽

pp. 1006-1013 ◽

Cited By ~ 23

Author(s):

Krzysztof Bialek ◽

Andrzej Swistowski ◽

Ronald Frank

Keyword(s):

Protein Interaction ◽

Synthetic Peptide ◽

Large Scale ◽

Proteome Analysis ◽

Peptide Arrays ◽

Protein Protein Interaction

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Properties of essential genes in the protein-protein interaction network of Escherichia coli from the perspective of network theory

Journal of Computational Methods in Sciences and Engineering ◽

10.3233/jcm-160674 ◽

2017 ◽

Vol 17 (1) ◽

pp. 209-216

Author(s):

G.C. Herrera-Almarza ◽

A.J. Alvarez-Socorro ◽

L.A. González-Díaz

Keyword(s):

Escherichia Coli ◽

Protein Interaction ◽

Protein Interaction Network ◽

Network Theory ◽

Interaction Network ◽

Essential Genes ◽

Protein Protein Interaction ◽

Protein Protein Interaction Network

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Comparison of the large-scale periplasmic proteomes of the Escherichia coli K-12 and B strains

Journal of Bioscience and Bioengineering ◽

10.1016/j.jbiosc.2013.09.008 ◽

2014 ◽

Vol 117 (4) ◽

pp. 437-442 ◽

Cited By ~ 8

Author(s):

Mee-Jung Han ◽

Jin Young Kim ◽

Jung A. Kim

Keyword(s):

Escherichia Coli ◽

Large Scale ◽

K 12

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The Application of Large-scale Yeast Two-hybrid to Study Protein — Protein Interaction

Hereditas (Beijing) ◽

10.1360/yc-006-1627 ◽

2006 ◽

Vol 28 (12) ◽

pp. 1627 ◽

Cited By ~ 1

Author(s):

Zhi-Hao WU

Keyword(s):

Protein Interaction ◽

Large Scale ◽

Yeast Two Hybrid ◽

Protein Protein Interaction ◽

Two Hybrid

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Low Concentrations of Free Hydrophobic Amino Acids Disrupt the Escherichia coli RNA Polymerase Core-σ70 Protein-Protein Interaction

Protein Expression and Purification ◽

10.1006/prep.2001.1552 ◽

2002 ◽

Vol 24 (1) ◽

pp. 163-170 ◽

Cited By ~ 4

Author(s):

Amarnath Maitra ◽

Jesus Moreno ◽

V.James Hernandez

Keyword(s):

Escherichia Coli ◽

Amino Acids ◽

Rna Polymerase ◽

Protein Interaction ◽

Protein Protein Interaction ◽

Low Concentrations ◽

Hydrophobic Amino Acids

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Novel Protein–Protein Interaction Between Escherichia coli SoxS and the DNA Binding Determinant of the RNA Polymerase α Subunit: SoxS Functions as a Co-sigma Factor and Redeploys RNA Polymerase from UP-element-containing Promoters to SoxS-dependent Promoters during Oxidative Stress

Journal of Molecular Biology ◽

10.1016/j.jmb.2004.08.057 ◽

2004 ◽

Vol 343 (3) ◽

pp. 513-532 ◽

Cited By ~ 33

Author(s):

Ishita M. Shah ◽

Richard E. Wolf

Keyword(s):

Oxidative Stress ◽

Escherichia Coli ◽

Dna Binding ◽

Rna Polymerase ◽

Protein Interaction ◽

Sigma Factor ◽

Α Subunit ◽

Protein Protein Interaction ◽

Novel Protein

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Large-scale identification of potential drug targets based on the topological features of human protein–protein interaction network

Analytica Chimica Acta ◽

10.1016/j.aca.2015.02.032 ◽

2015 ◽

Vol 871 ◽

pp. 18-27 ◽

Cited By ~ 17

Author(s):

Zhan-Chao Li ◽

Wen-Qian Zhong ◽

Zhi-Qing Liu ◽

Meng-Hua Huang ◽

Yun Xie ◽

...

Keyword(s):

Protein Interaction ◽

Protein Interaction Network ◽

Drug Targets ◽

Large Scale ◽

Interaction Network ◽

Potential Drug ◽

Protein Protein Interaction ◽

Topological Features ◽

Potential Drug Targets ◽

Protein Protein Interaction Network

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Protein-protein interaction network topology as a measure of bacterial plasmid-chromosome co-evolution

10.1101/610774 ◽

2019 ◽

Author(s):

Nghia T.H. Tran ◽

Arun Decano ◽

Tim Downing ◽

Alexander D. Rahm

Keyword(s):

Escherichia Coli ◽

Protein Interaction ◽

Network Topology ◽

Protein Interaction Network ◽

Interaction Network ◽

Gene Interactions ◽

Protein Protein Interaction ◽

Chromosome Gene ◽

Bacterial Plasmid ◽

Protein Protein Interaction Network

AbstractIn this work, we investigate the evolvability of plasmids by examining the topology of plasmid-chromosome gene interactions in Escherichia coli ST131. We discover a convergence of the ratio of non-trivial loops per protein-protein interaction, which allows us to introduce a new invariant of bacterial PPINs: the indirect connectivity value.

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