Predicting transfer RNA gene activity from sequence and genome context

Bryan P. Thornlow; Joel Armstrong; Andrew D. Holmes; Jonathan M. Howard; Russell B. Corbett-Detig; Todd M. Lowe

doi:10.1101/gr.256164.119

Predicting transfer RNA gene activity from sequence and genome context

Genome Research ◽

10.1101/gr.256164.119 ◽

2019 ◽

Vol 30 (1) ◽

pp. 85-94 ◽

Cited By ~ 2

Author(s):

Bryan P. Thornlow ◽

Joel Armstrong ◽

Andrew D. Holmes ◽

Jonathan M. Howard ◽

Russell B. Corbett-Detig ◽

...

Keyword(s):

Transfer Rna ◽

Gene Activity ◽

Transfer Rna Gene ◽

Genome Context

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Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae 1 1Edited by J. Karn

Journal of Molecular Biology ◽

10.1006/jmbi.1997.0942 ◽

1997 ◽

Vol 268 (2) ◽

pp. 322-330 ◽

Cited By ~ 190

Author(s):

Riccardo Percudani ◽

Angelo Pavesi ◽

Simone Ottonello

Keyword(s):

Saccharomyces Cerevisiae ◽

Transfer Rna ◽

Translational Selection ◽

Gene Redundancy ◽

Transfer Rna Gene

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Erratum to: Transfer RNA Gene Numbers may not be Completely Responsible for the Codon Usage Bias in Asparagine, Isoleucine, Phenylalanine, and Tyrosine in the High Expression Genes in Bacteria

Journal of Molecular Evolution ◽

10.1007/s00239-012-9531-2 ◽

2012 ◽

Vol 75 (3-4) ◽

pp. 151-153

Author(s):

Siddhartha Sankar Satapathy ◽

Malay Dutta ◽

Alak Kumar Buragohain ◽

Suvendra Kumar Ray

Keyword(s):

Codon Usage ◽

Codon Usage Bias ◽

Transfer Rna ◽

High Expression ◽

Transfer Rna Gene

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Yeast extracts for transfer RNA gene transcription and processing

RNA Processing Part B: Specific Methods - Methods in Enzymology ◽

10.1016/0076-6879(90)81142-h ◽

1990 ◽

pp. 439-450 ◽

Cited By ~ 11

Author(s):

Claire F. Evans ◽

David R. Engelke

Keyword(s):

Gene Transcription ◽

Transfer Rna ◽

Transfer Rna Gene

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THE STRUCTURE AND SYNTHESIS OF A TYROSINE TRANSFER RNA GENE

XXIVth International Congress of Pure and Applied Chemistry ◽

10.1016/b978-0-408-70577-6.50004-9 ◽

1974 ◽

pp. 19-43

Author(s):

H. Gobind Khorana

Keyword(s):

Transfer Rna ◽

Transfer Rna Gene

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Total synthesis of a tyrosine suppressor transfer RNA gene. XVII. Transcription, in vitro, of the synthetic gene and processing of the primary transcript to transfer RNA.

Journal of Biological Chemistry ◽

10.1016/s0021-9258(18)50483-x ◽

1979 ◽

Vol 254 (13) ◽

pp. 5802-5816 ◽

Cited By ~ 8

Author(s):

T Sekiya ◽

R Contreras ◽

T Takeya ◽

H G Khorana

Keyword(s):

Total Synthesis ◽

Transfer Rna ◽

Synthetic Gene ◽

Primary Transcript ◽

Transfer Rna Gene ◽

Transcription In Vitro

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Structural organization of the transfer RNA gene clusters of cholera phage φ l49

Journal of Biosciences ◽

10.1007/bf02703116 ◽

1993 ◽

Vol 18 (2) ◽

pp. 195-205 ◽

Cited By ~ 1

Author(s):

Nripendranath Manual ◽

Ranajit Kumar Ghosh

Keyword(s):

Structural Organization ◽

Gene Clusters ◽

Transfer Rna ◽

Transfer Rna Gene

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Gene recruitment – A common mechanism in the evolution of transfer RNA gene families

Gene ◽

10.1016/j.gene.2010.12.009 ◽

2011 ◽

Vol 475 (1) ◽

pp. 22-29 ◽

Cited By ~ 24

Author(s):

Xiujuan Wang ◽

Dennis V. Lavrov

Keyword(s):

Gene Families ◽

Transfer Rna ◽

Common Mechanism ◽

Transfer Rna Gene ◽

Gene Recruitment

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Transfer RNA gene recruitment in mitochondrial DNA

Trends in Genetics ◽

10.1016/j.tig.2005.01.004 ◽

2005 ◽

Vol 21 (3) ◽

pp. 129-133 ◽

Cited By ~ 54

Author(s):

D LAVROV ◽

B LANG

Keyword(s):

Mitochondrial Dna ◽

Transfer Rna ◽

Transfer Rna Gene ◽

Gene Recruitment

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Mutant of the glutamine transfer RNA gene as UGA suppressor in Escherichia coli

MGG Molecular & General Genetics ◽

10.1007/bf00264450 ◽

1990 ◽

Vol 223 (3) ◽

pp. 433-437 ◽

Cited By ~ 2

Author(s):

Hachiro Inokuchi ◽

Kazunori Kondo ◽

Masami Yoshimura ◽

Haruo Ozeki

Keyword(s):

Escherichia Coli ◽

Transfer Rna ◽

Transfer Rna Gene

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A Drosophila melanogaster transfer RNA gene cluster at the cytogenetic locus 90BC

Journal of Molecular Biology ◽

10.1016/0022-2836(84)90157-8 ◽

1984 ◽

Vol 179 (4) ◽

pp. 587-605 ◽

Cited By ~ 9

Author(s):

Robert DeLotto ◽

Paul Schedl

Keyword(s):

Drosophila Melanogaster ◽

Gene Cluster ◽

Transfer Rna ◽

Transfer Rna Gene

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