scholarly journals Network properties derived from deep sequencing of human B-cell receptor repertoires delineate B-cell populations

2013 ◽  
Vol 23 (11) ◽  
pp. 1874-1884 ◽  
Author(s):  
Rachael J.M. Bashford-Rogers ◽  
Anne L. Palser ◽  
Brian J. Huntly ◽  
Richard Rance ◽  
George S. Vassiliou ◽  
...  
Nature ◽  
2019 ◽  
Vol 566 (7744) ◽  
pp. 398-402 ◽  
Author(s):  
Cinque Soto ◽  
Robin G. Bombardi ◽  
Andre Branchizio ◽  
Nurgun Kose ◽  
Pranathi Matta ◽  
...  

2009 ◽  
Vol 183 (9) ◽  
pp. 5630-5643 ◽  
Author(s):  
Kristen L. Hoek ◽  
Gianluca Carlesso ◽  
Emily S. Clark ◽  
Wasif N. Khan

Blood ◽  
2008 ◽  
Vol 111 (3) ◽  
pp. 1665-1676 ◽  
Author(s):  
Antonio Ruiz-Vela ◽  
Mohit Aggarwal ◽  
Paloma de la Cueva ◽  
Cezary Treda ◽  
Beatriz Herreros ◽  
...  

AbstractAberrant inhibition of B-cell receptor (BCR)-induced programmed cell death pathways is frequently associated with the development of human auto-reactive B-cell lymphomas. Here, we integrated loss-of-function, genomic, and bioinformatics approaches for the identification of oncogenic mechanisms linked to the inhibition of BCR-induced clonal deletion pathways in human B-cell lymphomas. Lentiviral (HIV)-based RNA interference screen identified MCL1 as a key survival molecule linked to BCR signaling. Loss of MCL1 by RNA interference rendered human B-cell lymphomas sensitive to BCR-induced programmed cell death. Conversely, MCL1 overexpression blocked programmed cell death on BCR stimulation. To get insight into the mechanisms of MCL1-induced survival and transformation, we screened 41 000 human genes in a genome-wide gene expression profile analysis of MCL1-overexpressing B-cell lymphomas. Bioinformatic gene network reconstruction illustrated reprogramming of relevant oncoproteins within β-catenin–T-cell factor signaling pathways induced by enforced MCL1 expression. Overall, our findings not only illustrate MCL1 as an aberrantly expressed reprogramming oncoprotein in follicular lymphomas but also highlight MCL1 as key therapeutic target.


BMB Reports ◽  
2019 ◽  
Vol 52 (9) ◽  
pp. 540-547 ◽  
Author(s):  
Daeun Kim ◽  
Daechan Park

2021 ◽  
Vol 360 ◽  
pp. 104256
Author(s):  
Shucui Zhang ◽  
Shigang Zhang ◽  
Zongwei Lin ◽  
Xinjie Zhang ◽  
Xinyao Dou ◽  
...  

Author(s):  
Jacob D. Galson ◽  
Sebastian Schaetzle ◽  
Rachael J. M. Bashford-Rogers ◽  
Matthew I. J. Raybould ◽  
Aleksandr Kovaltsuk ◽  
...  

AbstractDeep sequencing of B cell receptor (BCR) heavy chains from a cohort of 19 COVID-19 patients from the UK reveals a stereotypical naive immune response to SARS-CoV-2 which is consistent across patients and may be a positive indicator of disease outcome. Clonal expansion of the B cell memory response is also observed and may be the result of memory bystander effects. There was a strong convergent sequence signature across patients, and we identified 777 clonotypes convergent between at least four of the COVID-19 patients, but not present in healthy controls. A subset of the convergent clonotypes were homologous to known SARS and SARS-CoV-2 spike protein neutralising antibodies. Convergence was also demonstrated across wide geographies by comparison of data sets between patients from UK, USA and China, further validating the disease association and consistency of the stereotypical immune response even at the sequence level. These convergent clonotypes provide a resource to identify potential therapeutic and prophylactic antibodies and demonstrate the potential of BCR profiling as a tool to help understand and predict positive patient responses.


2016 ◽  
Vol 5 (11) ◽  
pp. e1232220 ◽  
Author(s):  
Jinsheng Weng ◽  
Flavio Egidio Baio ◽  
Kelsey E. Moriarty ◽  
Hiroki Torikai ◽  
Hua Wang ◽  
...  

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