scholarly journals Combining single- and repeated-visit occupancy models to make the best of monitoring surveys

2019 ◽  
Author(s):  
Valentin Lauret ◽  
Hélène Labach ◽  
Matthieu Authier ◽  
Olivier Gimenez
Keyword(s):  
Bottlenose Dolphins ◽  
Ecological Monitoring ◽  
Western Mediterranean ◽  
List Type ◽  
Occupancy Models ◽  
Single Visit ◽  
The North ◽  
Aerial Surveys ◽  
Single Method ◽  
Repeated Visit

AbstractA major challenge in applied ecology consists in integrating knowledge from different datasets to produce robust ecological indicators. To estimate species distribution, occupancy models are a flexible framework that can accommodate several datasets obtained from different sampling methods. However, repeating visits at sampling sites is a prerequisite for using standard occupancy models, which may limit their use. Under certain conditions, detection/non-detection data collected during single visit can be analysed with occupancy models. To date however, single-visit occupancy models have never been used to combine several different datasets.Here, we developed an approach that combines multi-method and single-visit occupancy models. As a case study, we estimated the distribution of Bottlenose dolphins (Tursiops truncatus) over the North-western Mediterranean Sea by combining 24,624 km of aerial surveys and 21,464 km of at-sea monitoring. We compared the outputs of single-vs. repeated-visit multi-method occupancy models, and that of single-method occupancy models.Multi-method models allowed a better sampling coverage in both coasts and high seas and provided a better precision for occupancy estimates than single-method occupancy models using aerial surveys or at-sea surveys in isolation.Overall, single- and repeated-visit multi-method occupancy models produced similar inference about the distribution of bottlenose dolphins. This suggests that single-visit occupancy models provide robust occupancy estimates, which open promising perspectives for the use of non-standardized datasets.Synthesis and applications: Single-visit multi-method occupancy models can help making the best out of ecological monitoring programs by optimizing cost effectiveness through the formal combination of datasets.

scholarly journals Determinants of lungworm specificity in five cetacean species in the western Mediterranean

2021 ◽  
Vol 14 (1) ◽  
Author(s):  
Rachel Pool ◽  
Clara Romero-Rubira ◽  
Juan Antonio Raga ◽  
Mercedes Fernández ◽  
Francisco Javier Aznar
Keyword(s):  
Bottlenose Dolphins ◽  
Parasite Burden ◽  
Western Mediterranean ◽  
Host Size ◽  
Cetacean Species ◽  
Stenella Coeruleoalba ◽  
Species Similarity ◽  
Pilot Whales ◽  
Common Dolphins ◽  
Prey Overlap

Abstract Background Current data about Pseudaliidae show contrasting patterns of host specificity between congeneric species. We investigated how both contact and compatibility between hosts and parasites contributed to the patterns of lungworm infection observed in a community of five species of cetaceans in the western Mediterranean. Methods The lungs of 119 striped dolphins Stenella coeruleoalba, 18 bottlenose dolphins Tursiops truncatus, 7 Risso’s dolphins Grampus griseus, 7 long-finned pilot whales Globicephala melas, and 6 common dolphins Delphinus delphis were analysed for lungworms. Parasites were identified by morphology and analysis of ITS2 sequences using both maximum likelihood and Bayesian inference methods. Body length was used as a proxy for lungworm species fitness in different hosts and compared with Kruskal-Wallis tests. Infection parameters were compared between cetacean species using Fisher’s exact tests and Kruskal-Wallis tests. Phylogenetic specificity was explored by collating the overall lungworm species prevalence values in hosts from previous surveys in various localities. To explore the relative importance of vertical and horizontal transmission, Spearman’s rank correlation was used to look for an association between host size and lungworm burden. A Mantel test was used to explore the association between lungworm species similarity and prey overlap using dietary data. Results Halocercus delphini had higher infection levels in striped dolphins and common dolphins; Stenurus ovatus had higher infection levels in bottlenose dolphins; and Stenurus globicephalae had higher infection levels in long-finned pilot whales. These results are congruent with findings on a global scale. Morphometric comparison showed that the larger nematodes were found in the same host species that had the highest parasite burden. Lungworms were found in neonatal striped dolphins and a Risso’s dolphin, and there was a weak but significant correlation between host size and parasite burden in striped dolphins and bottlenose dolphins. There was also a weak but significant association between prey overlap and lungworm species similarity. Conclusions Data indicate that phylogenetic specificity has an important role in governing host–parasite associations, as indicated by the higher infection levels and larger nematode size in certain hosts. However, diet can also influence infection patterns in these preferred hosts and contribute to less severe infections in other hosts.

scholarly journals A captorhinid-dominated assemblage from the palaeoequatorial Permian of Menorca (Balearic Islands, western Mediterranean)

2021 ◽  
pp. 1-21
Author(s):  
Rafel MATAMALES-ANDREU ◽  
Francesc X. ROIG-MUNAR ◽  
Oriol OMS ◽  
Àngel GALOBART ◽  
Josep FORTUNY
Keyword(s):  
Western Mediterranean ◽  
Balearic Islands ◽  
Distribution Area ◽  
Lower Permian ◽  
Incertae Sedis ◽  
The North ◽  
Low Latitudes ◽  
High Fibre ◽  
Successful Group ◽  
Neighbouring Island

ABSTRACT Moradisaurine captorhinid eureptiles were a successful group of high-fibre herbivores that lived in the arid low latitudes of Pangaea during the Permian. Here we describe a palaeoassemblage from the Permian of Menorca (Balearic Islands, western Mediterranean), consisting of ichnites of small captorhinomorph eureptiles, probably moradisaurines (Hyloidichnus), and parareptiles (cf. Erpetopus), and bones of two different taxa of moradisaurines. The smallest of the two is not diagnostic beyond Moradisaurinae incertae sedis. The largest one, on the other hand, shows characters that are not present in any other known species of moradisaurine (densely ornamented maxillar teeth), and it is therefore described as Balearosaurus bombardensis gen. et sp. nov. Other remains found in the same outcrop are identified as cf. Balearosaurus bombardensis gen. et sp. nov., as they could also belong to the newly described taxon. This species is sister to the moradisaurine from the lower Permian of the neighbouring island of Mallorca, and is also closely related to the North American genus Rothianiscus. This makes it possible to suggest the hypothesis that the Variscan mountains, which separated North America from southern Europe during the Permian, were not a very important palaeobiogeographical barrier to the dispersion of moradisaurines. In fact, mapping all moradisaurine occurrences known so far, it is shown that their distribution area encompassed both sides of the Variscan mountains, essentially being restricted to the arid belt of palaeoequatorial Pangaea, where they probably outcompeted other herbivorous clades until they died out in the late Permian.

scholarly journals Joint Modelling of Wave Energy Flux and Wave Direction

Processes ◽  
2021 ◽  
Vol 9 (3) ◽  
pp. 460
Author(s):  
Takvor H. Soukissian ◽  
Flora E. Karathanasi
Keyword(s):  
Energy Flux ◽  
Wave Energy ◽  
Goodness Of Fit ◽  
North Atlantic Ocean ◽  
Wave Climate ◽  
Western Mediterranean ◽  
Wave Direction ◽  
Bivariate Model ◽  
The North ◽  
Wave Energy Flux

In the context of wave resource assessment, the description of wave climate is usually confined to significant wave height and energy period. However, the accurate joint description of both linear and directional wave energy characteristics is essential for the proper and detailed optimization of wave energy converters. In this work, the joint probabilistic description of wave energy flux and wave direction is performed and evaluated. Parametric univariate models are implemented for the description of wave energy flux and wave direction. For wave energy flux, conventional, and mixture distributions are examined while for wave direction proven and efficient finite mixtures of von Mises distributions are used. The bivariate modelling is based on the implementation of the Johnson–Wehrly model. The examined models are applied on long-term measured wave data at three offshore locations in Greece and hindcast numerical wave model data at three locations in the western Mediterranean, the North Sea, and the North Atlantic Ocean. A global criterion that combines five individual goodness-of-fit criteria into a single expression is used to evaluate the performance of bivariate models. From the optimum bivariate model, the expected wave energy flux as function of wave direction and the distribution of wave energy flux for the mean and most probable wave directions are also obtained.

scholarly journals Biogeography of acoustic biodiversity of NW Mediterranean coralligenous reefs

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Lucia Di Iorio ◽  
Manon Audax ◽  
Julie Deter ◽  
Florian Holon ◽  
Julie Lossent ◽  
...  
Keyword(s):  
Large Scale ◽  
Spatial Scales ◽  
Western Mediterranean ◽  
Ecosystem Functions ◽  
Marine Biodiversity ◽  
Predator Species ◽  
The North ◽  
Mediterranean Habitats ◽  
Geographical Regions ◽  
Nw Mediterranean

AbstractMonitoring the biodiversity of key habitats and understanding the drivers across spatial scales is essential for preserving ecosystem functions and associated services. Coralligenous reefs are threatened marine biodiversity hotspots that are challenging to monitor. As fish sounds reflect biodiversity in other habitats, we unveiled the biogeography of coralligenous reef sounds across the north-western Mediterranean using data from 27 sites covering 2000 km and 3 regions over a 3-year period. We assessed how acoustic biodiversity is related to habitat parameters and environmental status. We identified 28 putative fish sound types, which is up to four times as many as recorded in other Mediterranean habitats. 40% of these sounds are not found in other coastal habitats, thus strongly related to coralligenous reefs. Acoustic diversity differed between geographical regions. Ubiquitous sound types were identified, including sounds from top-predator species and others that were more specifically related to the presence of ecosystem engineers (red coral, gorgonians), which are key players in maintaining habitat function. The main determinants of acoustic community composition were depth and percentage coverage of coralligenous outcrops, suggesting that fish-related acoustic communities exhibit bathymetric stratification and are related to benthic reef assemblages. Multivariate analysis also revealed that acoustic communities can reflect different environmental states. This study presents the first large-scale map of acoustic fish biodiversity providing insights into the ichthyofauna that is otherwise difficult to assess because of reduced diving times. It also highlights the potential of passive acoustics in providing new aspects of the correlates of biogeographical patterns of this emblematic habitat relevant for monitoring and conservation.

scholarly journals Potential deployment of offshore bottom pressure gauges and adoption of data assimilation for tsunami warning system in the western Mediterranean Sea

2019 ◽  
Vol 6 (1) ◽  
Author(s):  
Mohammad Heidarzadeh ◽  
Yuchen Wang ◽  
Kenji Satake ◽  
Iyan E. Mulia
Keyword(s):  
Data Assimilation ◽  
Warning System ◽  
Western Mediterranean ◽  
Tsunami Warning ◽  
Sensitivity Analyses ◽  
Bottom Pressure ◽  
Tsunami Warning System ◽  
Earthquake Scenarios ◽  
The North ◽  
Western Mediterranean Basin

AbstractWestern Mediterranean Basin (WMB) is among tsunamigenic zones with numerous historical records of tsunami damage and deaths. Most recently, a moderate tsunami on 21 May 2003 offshore Algeria, North Africa, was a fresh call for strengthening tsunami warning capabilities in this enclosed water basin. Here, we propose to deploy offshore bottom pressure gauges (OBPGs) and to adopt the framework of a tsunami data assimilation (TDA) approach for providing timely tsunami forecasts. We demonstrate the potential enhancement of the tsunami warning system through the case study of the 2003 Algeria tsunami. Four scenarios of OBPG arrangements involving 10, 5, 3 and 2 gauges are considered. The offshore gauges are located at distances of 120–300 km from the North African coast. The warning lead times are 20, 30, 48 and 55 min for four points of interest considered in this study: Ibiza, Palma, Sant Antoni and Barcelona, respectively. The forecast accuracies are in the range of 69–85% for the four OBPG scenarios revealing acceptable accuracies for tsunami warnings. We conclude that installation of OBPGs in the WMB can be helpful for providing successful and timely tsunami forecasts. We note that the OBPG scenarios proposed in this study are applicable only for the case of the 2003 Algeria tsunami. Further studies including sensitivity analyses (e.g., number of OBPG stations; earthquake magnitude, strike, epicenter) are required in order to determine OBPG arrangements that could be useful for various earthquake scenarios in the WMB.

scholarly journals Dynamical Downscaling of ERA5 Data on the North-Western Mediterranean Sea: From Atmosphere to High-Resolution Coastal Wave Climate

2021 ◽  
Vol 9 (2) ◽  
pp. 208
Author(s):  
Valentina Vannucchi ◽  
Stefano Taddei ◽  
Valerio Capecchi ◽  
Michele Bendoni ◽  
Carlo Brandini
Keyword(s):  
Mediterranean Sea ◽  
Wind Wave ◽  
Dynamical Downscaling ◽  
Wave Climate ◽  
Western Mediterranean ◽  
Limited Area ◽  
Computational Domain ◽  
Wave Hindcast ◽  
The North ◽  
Western Mediterranean Sea

A 29-year wind/wave hindcast is produced over the Mediterranean Sea for the period 1990–2018. The dataset is obtained by downscaling the ERA5 global atmospheric reanalyses, which provide the initial and boundary conditions for a numerical chain based on limited-area weather and wave models: the BOLAM, MOLOCH and WaveWatch III (WW3) models. In the WW3 computational domain, an unstructured mesh is used. The variable resolutions reach up to 500 m along the coasts of the Ligurian and Tyrrhenian seas (Italy), the main objects of the study. The wind/wave hindcast is validated using observations from coastal weather stations and buoys. The wind validation provides velocity correlations between 0.45 and 0.76, while significant wave height correlations are much higher—between 0.89 and 0.96. The results are also compared to the original low-resolution ERA5 dataset, based on assimilated models. The comparison shows that the downscaling improves the hindcast reliability, particularly in the coastal regions, and especially with regard to wind and wave directions.

scholarly journals Foraging dives of sperm whales in the north-western Mediterranean Sea

2012 ◽  
Vol 92 (8) ◽  
pp. 1799-1808 ◽  
Author(s):  
Alexandre Gannier ◽  
Estelle Petiau ◽  
Violaine Dulau ◽  
Luke Rendell
Keyword(s):  
Prey Capture ◽  
Sperm Whale ◽  
Western Mediterranean ◽  
Sperm Whales ◽  
The North ◽  
Western Mediterranean Sea ◽  
Single Animal ◽  
Components Analysis ◽  
Passive Acoustic ◽  
North Western

Oceanic odontocetes rely on echolocation to forage on pelagic or benthic prey, but their feeding ecology is difficult to study. We studied sperm whale foraging dives during summer in the north-western Mediterranean, using visual and passive acoustic observations. Clicking and creaking activities were recorded during dives of focal whales, at distances <3000 m using a towed hydrophone and DAT recorder. A total of 52 sperm whales were recorded over at least one full dive cycle. Data were obtained for 156 complete dives in total, including sequences of up to nine consecutive dives. Various dive and environmental variables were entered in multiple linear regression and principal components analysis, as well as estimated mass of whales. Creak rate was 0.80 creak/minute on average, with moderate variance. Bigger whales tended to dive longer at greater depths (as suggested by ascent durations), and emitted more creaks during a dive: 20.2 creaks/dive on average for individuals <24 tons, compared to 25.6 creaks/dive for animals >24 tons of estimated mass. For individual whales, creak rates did not vary significantly with size (range 0.78–0.80 creak/minute), but decreased with time of the day, and increased for shorter foraging phases. For different dives, higher creak rates were also observed earlier in the day, and linked to shorter foraging phases and surface durations. Although the exact significance of creak emissions (i.e. foraging attempt or prey capture) is not precisely determined, creak rates may be reliably used to quantify sperm whale foraging when single animal dives can be followed acoustically.

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