scholarly journals An endophytic bacteria (Pseudomonas aeruginosa) strain translocated and protected tomato (Solanum lycopersicum L.) plants from its parasitic weed Phelipanche aegyptiaca

2019 ◽  
Author(s):  
Lilach Iasur Kruh ◽  
Jacline Abu-Nassar ◽  
Ofir Lidor ◽  
Radi Aly
Keyword(s):  
Pseudomonas Aeruginosa ◽  
Endophytic Bacteria ◽  
Vascular System ◽  
Fish Analysis ◽  
Plant Host ◽  
Parasitic Weed ◽  
Tomato Plants ◽  
Solanum Lycopersicum L ◽  
Wide Range ◽  
Yield Quality

AbstractPhelipanche aegyptiaca is an obligate holo-parasitic weed lacking a functional photosynthetic system, which subsists on roots of a wide range of host crops, causing severe losses in yield quality and quantity. The parasite and its host are connected through their vascular system, forming a unique ecological system that enables the exchange of various substances. In a previous study, it was suggested that endophytic bacteria, which naturally inhabit the internal tissues of plants, can also be transmitted from the parasitic weed to its host and vice versa.In the current study, we investigate the characteristics of a previously isolated Pseudomonas sp. PhelS10 strain, using both biochemical and molecular methods. Our results revealed that production of Pseudomonas aeruginosa quinolone signal (PQS) was 2.1 times higher than that of the standard Pseudomonas aeruginosa strain (PAO1), which contributed to a 22% higher biofilm formation capability. PhelS10 strain was detected in the xylem of tomato plants using FISH analysis. In addition, PhelS10 strain was found in the parasitic weed’s inner tissues, confirming the hypothesis that endophytic bacteria traffic between the plant host and its parasitic weed.

scholarly journals Secondary metabolites produced by endophytic bacteria against the Root-Knot Nematode (Meloidogyne sp.)

2020 ◽  
Vol 21 (11) ◽  
Author(s):  
Vina Maulidia ◽  
Loekas Soesanto ◽  
Syamsuddin Syamsuddin ◽  
Khairan Khairan ◽  
Takahiro Hamaguchi ◽  
...  
Keyword(s):  
Secondary Metabolites ◽  
Endophytic Bacteria ◽  
Psidium Guajava ◽  
Plant Tissues ◽  
Root Number ◽  
Root Knot Nematode ◽  
Plant Host ◽  
Tomato Plants ◽  
Theobroma Cacao L ◽  
Meloidogyne Sp

Abstract. Maulidia V, Soesanto L, Syamsuddin, Khairan K, Hamaguchi T, Hasegawa K, Sriwati R. 2020. Secondary metabolites produced by endophytic bacteria against the Root-Knot Nematode (Meloidogyne sp.). Biodiversitas 21: 5270-5275. Endophytic bacteria live and colonize in plant tissues without causing disease to their plant host. Among several processes, these bacteria can produce secondary metabolites that can help in the defense of plant host against pathogens. This study aimed to identify endophytic bacteria as biocontrol agents against Meloidogyne sp. in tomato plants. Six endophytic bacteria candidates from the genus Pseudomonas, Arthrobacter, Bacillus, and Serratia were isolated from Solanum Lycopersicum, Psidium guajava, Pinus merkusii, Dendrocalamus asper, Albizia chinensis, and Theobroma cacao L, respectively. The average mortality of Meloidogyne sp. by endophytic bacteria was 70,27% to 95,46%. From these, B. thuringiensis AK08 produced compounds of the secondary metabolites such as flavonoid, phenol, tannins, terpenoids, steroids, saponins, and alkaloids. The best result of the average incubation period, number of galls in the root, number of nematodes at the root, and the number of nematodes in the soil on tomato plant were shown by B. thuringiensis. The major compounds in GC-MS analysis of B. thuringiensis were cholest-5-en-3-ol (3.beta.)-carbonochloridate (25.35%). Bacillus thuringiensis not only has rules as bio-insecticide but also has nematicidal effect.

scholarly journals Sewage sludge enhances tomato growth and improves fruit-yield quality by restoring soil fertility

2021 ◽  
Vol 67 (No. 9) ◽  
pp. 514-523
Author(s):  
Ebrahem Eid ◽  
Kamal Shaltout ◽  
Saad Alamri ◽  
Sulaiman Alrumman ◽  
Ahmed Hussain ◽  
...  
Keyword(s):  
Sewage Sludge ◽  
Soil Fertility ◽  
Agricultural Soils ◽  
Crop Productivity ◽  
Fruit Yield ◽  
Tomato Plants ◽  
Solanum Lycopersicum L ◽  
Yield Quality ◽  
Valid Solution ◽  
Plant Crop

Among the various disposal strategies for sewage sludge (SS), soil application is the most suitable. This study was conducted to evaluate soil amendment with SS (0, 10, 20, 30 and 40 g/kg) and its impact on soil fertility and tomato (Solanum lycopersicum L.) growth. The SS significantly improved the agromorphological attributes, the number of produced fruits, and the fruit biomass of tomato plants. The 30 g/kg application of SS led to the highest growth rate and fruit yield. Considering the fruits, the best safe enrichment of metal nutrients was recorded at 30 g/kg, with a significant increase in the micronutrient metals Mn, Zn, Ni, Cu, and Fe with 624, 193, 125, 70, and 32%, respectively, compared to the control. The SS amendment enhanced soil fertility, and heavy metals were within the permissible ranges for agricultural soils. Bioaccumulation factors (BFs) indicated that SS application induced the accumulation of most of the studied metals in the roots, and the BF values of Zn, Cu, Ni, and Pb were > 1. The current study concluded that recirculating SS nutrient components to agricultural soils could offer a valid solution for the sustainable management of this organic waste and enhance plant-crop productivity.  

Interaction of Tomatoes (Solanum lycopersicum L.) Transformed by rapA1 Gene with Pseudomonas sp. 102 Bacteria Resistant to High Cadmium Concentrations as a Basis for Effective Symbiotic Phytoremediation System

2019 ◽  
pp. 38-48
Author(s):  
L.R. Khakimova ◽  
A.M. Lavina ◽  
L.R. Karimova ◽  
V.V. Fedyaev ◽  
An.Kh. Baymiev ◽  
...  
Keyword(s):  
Growth Parameters ◽  
Basic Research ◽  
Toxic Effects ◽  
Research Centre ◽  
Pseudomonas Sp ◽  
Tomato Plants ◽  
Solanum Lycopersicum L ◽  
Plant Growth Promoting ◽  
High Concentrations ◽  
The Government

A Pseudomonas sp. 102 strain, which is highly resistant to toxic effects of cadmium and has plant growth-promoting activity, can significantly increase growth parameters and biomass of tomato plants, including those observed under toxic effects of cadmium. The greatest positive effect was observed in plants transformed with the bacterial adhesin gene rapA1, the product of which is important for colonization of plant roots by bacteria. It was also shown that shoots of transgenic tomato plants accumulated the greatest amount of cadmium during inoculation with Pseudomonas sp. 102. The ability to extract high concentrations of cadmium and accumulate a large biomass under stress opens up prospects for the further use of associative interactions between tomato and Pseudomonas for phytoremediation. phytoremediation, cadmium, tomato, Pseudomonas, inoculation, agglutinins, This study was carried out using the equipment of the Biomika Centre for Collective Use of the Institute of Biochemistry and Genetics (Ufa Federal Research Centre, Russian Academy of Sciences) as part of the government task (project no. AAAA-A16-1160203500284). This study was supported by the Russian Foundation for Basic Research (project nos. 18-34-20004 and 18-34-00033) and 18-344-0033 mol_a_ved and 34-00033 mol_a).

scholarly journals Pseudomonas aeruginosa PA80 is a cystic fibrosis isolate deficient in RhlRI quorum sensing

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Syed A. K. Shifat Ahmed ◽  
Michelle Rudden ◽  
Sabrina M. Elias ◽  
Thomas J. Smyth ◽  
Roger Marchant ◽  
...  
Keyword(s):  
Cystic Fibrosis ◽  
Pseudomonas Aeruginosa ◽  
Quorum Sensing ◽  
Virulence Factors ◽  
Genomic Islands ◽  
Clinical Strain ◽  
Whole Genome ◽  
Synonymous Mutations ◽  
Wide Range

AbstractPseudomonas aeruginosa uses quorum sensing (QS) to modulate the expression of several virulence factors that enable it to establish severe infections. The QS system in P. aeruginosa is complex, intricate and is dominated by two main N-acyl-homoserine lactone circuits, LasRI and RhlRI. These two QS systems work in a hierarchical fashion with LasRI at the top, directly regulating RhlRI. Together these QS circuits regulate several virulence associated genes, metabolites, and enzymes in P. aeruginosa. Paradoxically, LasR mutants are frequently isolated from chronic P. aeruginosa infections, typically among cystic fibrosis (CF) patients. This suggests P. aeruginosa can undergo significant evolutionary pathoadaptation to persist in long term chronic infections. In contrast, mutations in the RhlRI system are less common. Here, we have isolated a clinical strain of P. aeruginosa from a CF patient that has deleted the transcriptional regulator RhlR entirely. Whole genome sequencing shows the rhlR locus is deleted in PA80 alongside a few non-synonymous mutations in virulence factors including protease lasA and rhamnolipid rhlA, rhlB, rhlC. Importantly we did not observe any mutations in the LasRI QS system. PA80 does not appear to have an accumulation of mutations typically associated with several hallmark pathoadaptive genes (i.e., mexT, mucA, algR, rpoN, exsS, ampR). Whole genome comparisons show that P. aeruginosa strain PA80 is closely related to the hypervirulent Liverpool epidemic strain (LES) LESB58. PA80 also contains several genomic islands (GI’s) encoding virulence and/or resistance determinants homologous to LESB58. To further understand the effect of these mutations in PA80 QS regulatory and virulence associated genes, we compared transcriptional expression of genes and phenotypic effects with isogenic mutants in the genetic reference strain PAO1. In PAO1, we show that deletion of rhlR has a much more significant impact on the expression of a wide range of virulence associated factors rather than deletion of lasR. In PA80, no QS regulatory genes were expressed, which we attribute to the inactivation of the RhlRI QS system by deletion of rhlR and mutation of rhlI. This study demonstrates that inactivation of the LasRI system does not impact RhlRI regulated virulence factors. PA80 has bypassed the common pathoadaptive mutations observed in LasR by targeting the RhlRI system. This suggests that RhlRI is a significant target for the long-term persistence of P. aeruginosa in chronic CF patients. This raises important questions in targeting QS systems for therapeutic interventions.

scholarly journals The Coevolution of Plants and Microbes Underpins Sustainable Agriculture

2021 ◽  
Vol 9 (5) ◽  
pp. 1036
Author(s):  
Dongmei Lyu ◽  
Levini A. Msimbira ◽  
Mahtab Nazari ◽  
Mohammed Antar ◽  
Antoine Pagé ◽  
...  
Keyword(s):  
Microbial Community ◽  
Plant Growth ◽  
Stress Resistance ◽  
Mycorrhizal Fungi ◽  
Plant Tissues ◽  
Terrestrial Plants ◽  
Plant Host ◽  
Symbiotic Relationships ◽  
Wide Range ◽  
Terrestrial Environments

Terrestrial plants evolution occurred in the presence of microbes, the phytomicrobiome. The rhizosphere microbial community is the most abundant and diverse subset of the phytomicrobiome and can include both beneficial and parasitic/pathogenic microbes. Prokaryotes of the phytomicrobiome have evolved relationships with plants that range from non-dependent interactions to dependent endosymbionts. The most extreme endosymbiotic examples are the chloroplasts and mitochondria, which have become organelles and integral parts of the plant, leading to some similarity in DNA sequence between plant tissues and cyanobacteria, the prokaryotic symbiont of ancestral plants. Microbes were associated with the precursors of land plants, green algae, and helped algae transition from aquatic to terrestrial environments. In the terrestrial setting the phytomicrobiome contributes to plant growth and development by (1) establishing symbiotic relationships between plant growth-promoting microbes, including rhizobacteria and mycorrhizal fungi, (2) conferring biotic stress resistance by producing antibiotic compounds, and (3) secreting microbe-to-plant signal compounds, such as phytohormones or their analogues, that regulate aspects of plant physiology, including stress resistance. As plants have evolved, they recruited microbes to assist in the adaptation to available growing environments. Microbes serve themselves by promoting plant growth, which in turn provides microbes with nutrition (root exudates, a source of reduced carbon) and a desirable habitat (the rhizosphere or within plant tissues). The outcome of this coevolution is the diverse and metabolically rich microbial community that now exists in the rhizosphere of terrestrial plants. The holobiont, the unit made up of the phytomicrobiome and the plant host, results from this wide range of coevolved relationships. We are just beginning to appreciate the many ways in which this complex and subtle coevolution acts in agricultural systems.

scholarly journals Breeding Strategies to Improve Miscanthus as a Sustainable Source of Biomass for Bioenergy and Biorenewable Products

Agronomy ◽  
2019 ◽  
Vol 9 (11) ◽  
pp. 673 ◽  
Author(s):  
John Clifton-Brown ◽  
Kai-Uwe Schwarz ◽  
Danny Awty-Carroll ◽  
Antonella Iurato ◽  
Heike Meyer ◽  
...  
Keyword(s):  
Significant Contribution ◽  
Perennial Grass ◽  
Time Frame ◽  
Eastern Asia ◽  
Germplasm Collections ◽  
Naturally Occurring ◽  
Wide Range ◽  
Yield Quality ◽  
Short Time ◽  
Commercial Expansion

Miscanthus, a C4 perennial grass native to Eastern Asia, is being bred to provide biomass for bioenergy and biorenewable products. Commercial expansion with the clonal hybrid M. × giganteus is limited by low multiplication rates, high establishment costs and drought sensitivity. These limitations can be overcome by breeding more resilient Miscanthus hybrids propagated by seed. Naturally occurring fast growing indigenous Miscanthus species are found in diverse environments across Eastern Asia. The natural diversity provides for plant breeders, the genetic resources to improve yield, quality, and resilience for a wide range of climates and adverse abiotic stresses. The challenge for Miscanthus breeding is to harness the diversity through selections of outstanding wild types, parents, and progenies over a short time frame to deploy hybrids that make a significant contribution to a world less dependent on fossil resources. Here are described the strategies taken by the Miscanthus breeding programme at Aberystwyth, UK and its partners. The programme built up one of the largest Miscanthus germplasm collections outside Asia. We describe the initial strategies to exploit the available genetic diversity to develop varieties. We illustrate the success of combining diverse Miscanthus germplasm and the selection criteria applied across different environments to identify promising hybrids and to develop these into commercial varieties. We discuss the potential for molecular selections to streamline the breeding process.

scholarly journals Effects of different methods to control the parasitic weed Phelipanche ramosa (L.) Pomel in processing tomato crops

2016 ◽  
Vol 10 (1s) ◽  
pp. 39 ◽  
Author(s):  
Grazia Disciglio ◽  
Francesco Lops ◽  
Antonia Carlucci ◽  
Giuseppe Gatta ◽  
Annalisa Tarantino ◽  
...  
Keyword(s):  
Control Strategies ◽  
Block Design ◽  
Soluble Solids ◽  
Marketable Yield ◽  
Department Of Agriculture ◽  
Parasitic Weed ◽  
Complete Control ◽  
Tomato Plants ◽  
Processing Tomato ◽  
Phelipanche Ramosa

The root-parasitic weed <em>Phelipanche ramosa</em> (L.) Pomel represents a major problem for processing tomato crops. The control of this holoparasitic plant is difficult, and better understanding of treatment methods is needed to develop new and specific control strategies. This study investigated 12 agronomic, chemical, biological and biotechnological strategies for the control of this parasitic weed, in comparison with the untreated situation. The trial was carried out in 2014 at the Department of Agriculture, Food and the Environment of the University of Foggia (southern Italy), using processing tomato plants grown in pots filled with soil from a field that was heavily infested with <em>P. ramosa</em>. After transplantation, top dressing was performed with 70 kg ha<sup>–1</sup> nitrogen. A randomised block design with 3 replicates (pots) was adopted. During the growing cycle of the tomato, at 70, 75, 81 and 88 days after transplantation, the number of parasitic shoots (branched plants) that had emerged in each pot was determined, and the leaf chlorophyll of the plants was measured using a soil-plantanalysis- development meter. At harvesting on 8 August 2014, the major quanti-qualitative yield parameters were determined, including marketable yield, mean weight, dry matter, soluble solids, and fruit colour. The results show lower chlorophyll levels in the parasitised tomato plants, compared to healthy plants. None of the treatments provided complete control against P. ramosa. However, among the methods tested, Radicon® biostimulant (Radicon, Inc., Elk Grove Village, IL, USA), compost activated with <em>Fusarium oxysporum</em>, nitrogen and sulphur mineral fertilisers, Enzone<sup>TM</sup> soil fumigant (Elliott Chemicals Ltd., Auckland, New Zealand), and a resistant tomato genotype mitigated the virulence of the attacks of this parasite. These effects should be improved by combining some of these treatments, especially for gradual and continued reduction in the <em>seed bank</em> of the parasite in the soil. For the tomato yields across the different treatments, there were no significant differences seen; however, the yields showed an improving trend for treatments with lower presence of the <em>P. ramosa</em> weed.

scholarly journals Specific Control of Pseudomonas aeruginosa Surface-Associated Behaviors by Two c-di-GMP Diguanylate Cyclases

mBio ◽  
2010 ◽  
Vol 1 (4) ◽  
Author(s):  
Judith H. Merritt ◽  
Dae-Gon Ha ◽  
Kimberly N. Cowles ◽  
Wenyun Lu ◽  
Diana K. Morales ◽  
...  
Keyword(s):  
Pseudomonas Aeruginosa ◽  
Biofilm Formation ◽  
Extracellular Polysaccharide ◽  
Diguanylate Cyclase ◽  
Flagellar Motility ◽  
Critical Question ◽  
Cyclic Diguanylate ◽  
Critical Signal ◽  
Content Type ◽  
Wide Range

ABSTRACT The signaling nucleotide cyclic diguanylate (c-di-GMP) regulates the transition between motile and sessile growth in a wide range of bacteria. Understanding how microbes control c-di-GMP metabolism to activate specific pathways is complicated by the apparent multifold redundancy of enzymes that synthesize and degrade this dinucleotide, and several models have been proposed to explain how bacteria coordinate the actions of these many enzymes. Here we report the identification of a diguanylate cyclase (DGC), RoeA, of Pseudomonas aeruginosa that promotes the production of extracellular polysaccharide (EPS) and contributes to biofilm formation, that is, the transition from planktonic to surface-dwelling cells. Our studies reveal that RoeA and the previously described DGC SadC make distinct contributions to biofilm formation, controlling polysaccharide production and flagellar motility, respectively. Measurement of total cellular levels of c-di-GMP in ∆roeA and ∆sadC mutants in two different genetic backgrounds revealed no correlation between levels of c-di-GMP and the observed phenotypic output with regard to swarming motility and EPS production. Our data strongly argue against a model wherein changes in total levels of c-di-GMP can account for the specific surface-related phenotypes of P. aeruginosa. IMPORTANCE A critical question in the study of cyclic diguanylate (c-di-GMP) signaling is how the bacterial cell integrates contributions of multiple c-di-GMP-metabolizing enzymes to mediate its cognate functional outputs. One leading model suggests that the effects of c-di-GMP must, in part, be localized subcellularly. The data presented here show that the phenotypes controlled by two different diguanylate cyclase (DGC) enzymes have discrete outputs despite the same total level of c-di-GMP. These data support and extend the model in which localized c-di-GMP signaling likely contributes to coordination of the action of the multiple proteins involved in the synthesis, degradation, and/or binding of this critical signal.

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