scholarly journals CPlantBox, a whole plant modelling framework for the simulation of water and carbon related processes

2019 ◽  
Author(s):  
Xiao-Ran Zhou ◽  
Andrea Schnepf ◽  
Jan Vanderborght ◽  
Daniel Leitner ◽  
André Lacointe ◽  
...  
Keyword(s):  
Experimental Data ◽  
Mechanistic Model ◽  
Flow Speed ◽  
Environment Interaction ◽  
Modeling Tools ◽  
Water Flows ◽  
Modelling Framework ◽  
Plant Environment ◽  
Whole Plant ◽  
Plant Modelling

AbstractThe interaction between carbon and flows within the plant is at the center of most growth and developmental processes. Understanding how these fluxes influence each other, and how they respond to heterogeneous environmental conditions, is important to answer diverse questions in forest, agriculture and environmental sciences. However, due to the high complexity of the plant-environment system, specific tools are needed to perform such quantitative analyses.Here we present CPlantBox, full plant modelling framework based on the root system model CRootBox. CPlantbox is capable of simulating the growth and development of a variety of plant architectures (root and shoot). In addition, the flexibility of CPlantBox enables its coupling with external modeling tools. Here, we connected it to an existing mechanistic model of water and carbon flows in the plant, PiafMunch.The usefulness of the CPlantBox modelling framework is exemplified in four case studies. Firstly, we illustrate the range of plant structures that can be simulated using CPlantBox. In the second example, we simulated diurnal carbon and water flows, which corroborates published experimental data. In the third case study, we simulated impacts of heterogeneous environment on carbon and water flows. Finally, we showed that our modelling framework can be used to fit phloem pressure and flow speed to (published) experimental data.The CPlantBox modelling framework is open-source, highly accessible and flexible. Its aim is to provide a quantitative framework for the understanding of plant-environment interaction.

scholarly journals CPlantBox, a whole-plant modelling framework for the simulation of water- and carbon-related processes

2020 ◽  
Vol 2 (1) ◽  
Author(s):  
Xiao-Ran Zhou ◽  
Andrea Schnepf ◽  
Jan Vanderborght ◽  
Daniel Leitner ◽  
André Lacointe ◽  
...  
Keyword(s):  
Experimental Data ◽  
Mechanistic Model ◽  
Flow Speed ◽  
Environment Interaction ◽  
Natural Ecosystem ◽  
Water Flows ◽  
Modelling Framework ◽  
Plant Environment ◽  
Whole Plant ◽  
Plant Modelling

Abstract The interaction between carbon and flows within the vasculature is at the centre of most growth and developmental processes. Understanding how these fluxes influence each other, and how they respond to heterogeneous environmental conditions, is important to answer diverse questions in agricultural and natural ecosystem sciences. However, due to the high complexity of the plant–environment system, specific tools are needed to perform such quantitative analyses. Here, we present CPlantBox, a whole-plant modelling framework based on the root system model CRootBox. CPlantBox is capable of simulating the growth and development of a variety of plant architectures (root and shoot). In addition, the flexibility of CPlantBox enables its coupling with external modelling tools. Here, we connected the model to an existing mechanistic model of water and carbon flows in the plant, PiafMunch. The usefulness of the CPlantBox modelling framework is exemplified in five case studies. Firstly, we illustrate the range of plant structures that can be simulated using CPlantBox. In the second example, we simulated diurnal carbon and water flows, which corroborates published experimental data. In the third case study, we simulated impacts of heterogeneous environment on carbon and water flows. Finally, we showed that our modelling framework can be used to fit phloem pressure and flow speed to (published) experimental data. The CPlantBox modelling framework is open source, highly accessible and flexible. Its aim is to provide a quantitative framework for the understanding of plant–environment interaction.

Application of a dynamic mechanistic model of small intestinal starch digestion in the dairy cow

2002 ◽  
Vol 2002 ◽  
pp. 104-104
Author(s):  
J. A. N. Mills ◽  
E. Kebreab ◽  
L. A. Crompton ◽  
J. Dijkstra ◽  
J. France
Keyword(s):  
Experimental Data ◽  
Small Intestine ◽  
Dairy Cow ◽  
Energy Recovery ◽  
Mechanistic Model ◽  
Biological Knowledge ◽  
Dietary Energy ◽  
Starch Digestion ◽  
High Contribution ◽  
Small Intestinal

The high contribution of postruminal starch digestion (>50%) to total tract starch digestion on certain energy dense diets (Mills et al. 1999) demands that limitations to small intestinal starch digestion are identified. Therefore, a dynamic mechanistic model of the small intestine was constructed and evaluated against published experimental data for abomasal carbohydrate infusions in the dairy cow. The mechanistic structure of the model allowed the current biological knowledge to be integrated into a system capable of identifying restrictions to dietary energy recovery from postruminal starch delivery.

A New Dynamic Wettability-Alteration Model for Oil-Wet Cores During Surfactant-Solution Imbibition

SPE Journal ◽  
2013 ◽  
Vol 18 (05) ◽  
pp. 818-828 ◽  
Author(s):  
M. Hosein Kalaei ◽  
Don W. Green ◽  
G. Paul Willhite
Keyword(s):  
Experimental Data ◽  
Oil Recovery ◽  
History Matching ◽  
Mechanistic Model ◽  
Surfactant Solution ◽  
Experimental Tests ◽  
Quantitative Agreement ◽  
Wettability Alteration ◽  
Porous Rock ◽  
Surfactant Solutions

Summary Wettability modification of solid rocks with surfactants is an important process and has the potential to recover oil from reservoirs. When wettability is altered by use of surfactant solutions, capillary pressure, relative permeabilities, and residual oil saturations change wherever the porous rock is contacted by the surfactant. In this study, a mechanistic model is described in which wettability alteration is simulated by a new empirical correlation of the contact angle with surfactant concentration developed from experimental data. This model was tested against results from experimental tests in which oil was displaced from oil-wet cores by imbibition of surfactant solutions. Quantitative agreement between the simulation results of oil displacement and experimental data from the literature was obtained. Simulation of the imbibition of surfactant solution in laboratory-scale cores with the new model demonstrated that wettability alteration is a dynamic process, which plays a significant role in history matching and prediction of oil recovery from oil-wet porous media. In these simulations, the gravity force was the primary cause of the surfactant-solution invasion of the core that changed the rock wettability toward a less oil-wet state.

Material Properties of Abdominal Aortic Aneurysm Wall From Uniaxial Tests

2000 ◽  
Author(s):  
Mano J. Thubrikar ◽  
Michel Labrosse ◽  
Jihad Al-Soudi ◽  
Brett Fowler ◽  
Francis Robicsek
Keyword(s):  
Experimental Data ◽  
Material Properties ◽  
Aortic Wall ◽  
Abdominal Aortic Aneurysms ◽  
Aortic Aneurysms ◽  
Modeling Tools ◽  
Aneurysm Wall ◽  
Abdominal Aortic ◽  
Abdominal Aortic Aneurysm Wall ◽  
Mechanical Models

Abstract Abdominal aortic aneurysms (AAA) rupture when the aortic wall cannot withstand the stresses and strains induced by the pulsatile blood pressure. In recent years, different mechanical models of aneurysms have been presented (Vorp et al., 1998, Di Martino et al., 1998, Thubrikar et al., 1999). Although powerful modeling tools such as finite elements are available, there is still a need for experimental data concerning the mechanical properties of the aneurysm wall.

Viscous Dissipation in Laminar Water Flows in Micro-Tubes

2007 ◽  
Author(s):  
In-Hwan Yang ◽  
Mohamed S. El-Genk
Keyword(s):  
Experimental Data ◽  
Viscous Dissipation ◽  
Temperature Rise ◽  
Experimental Results ◽  
Numerical Calculations ◽  
Analytical Expression ◽  
Water Flows ◽  
Good Agreement

Numerical calculations are performed to investigate the effect of viscous dissipation on the temperature rise and friction numbers for laminar water flows in micro-tubes. The calculated values are compared with those determined from reported experimental data for glass and diffused silica micro-tubes (D = 16 – 101 μm and L/D = 625 – 1479). The results confirm a definite slip at the wall with slip lengths of ∼ 0.7 μm and 1.0 μm, which decrease the friction number and the temperature rise in the micro-tubes, but their effect gradually diminishes as either D or L/D increases. The friction number decreases exponentially as D decreases and, to a lesser extent, as L/D increases. The effect of L/D on the friction number is insignificant for micro-tube diameters ≤ 20 μm. For D > 400 μm, the friction number approaches that of Hagen-Posieuille of 64 for macro-tubes when L/D > 1500, but approaches higher values at smaller L/D. The dimensionless analytical expression developed for calculating the friction number and the temperature rise for water flows in micro-tubes is in good agreement with both the numerical and experimental results.

Effect of PTFE on Thermal Conductivity of Gas Diffusion Layers of PEM Fuel Cells

2013 ◽  
Author(s):  
Hamidreza Sadeghifar ◽  
Ned Djilali ◽  
Majid Bahrami
Keyword(s):  
Experimental Data ◽  
Thermal Conductivity ◽  
Contact Resistance ◽  
Performance Modeling ◽  
Mechanistic Model ◽  
Pem Fuel Cells ◽  
Gas Diffusion ◽  
Gas Diffusion Layers ◽  
Diffusion Layers ◽  
First Time

Through-plane thermal conductivity of 14 SIGRACET gas diffusion layers (GDLs), including series 24 & 34, as well as 25 & 35, are measured under different compressive pressures, ranging from 2 to 14 bar, at the temperature of around 60 °C. The effect of compression, PTFE loadings, and micro porous layer (MPL) on thermal conductivity of the GDLs and their contact resistance with an iron clamping surface is experimentally investigated. The contact resistance of MPL coated on GDL with the substrate of that GDL is measured for the first time in this paper. A new robust mechanistic model is presented for predicting the through-plane thermal conductivity of GDLs treated with PTFE and is successfully verified with the present experimental data. The model can predict the experimentally-observed reduction in thermal conductivity as a result of PTFE treatment and provides detailed insights on performance modeling of PEMFCs.

Utilization of Gas-Liquid Cylindrical Cyclone (GLCC©) Compact Separator for Solids Removal—Part I: Minimum Required Liquid Injection Rate

2009 ◽  
Author(s):  
R. Arismendi ◽  
L. Gomez ◽  
S. Wang ◽  
R. Mohan ◽  
O. Shoham ◽  
...  
Keyword(s):  
Experimental Data ◽  
Mechanistic Model ◽  
Injection Rate ◽  
Gas Velocity ◽  
Horizontal Section ◽  
Injection Point ◽  
Solids Transport ◽  
Liquid Injection ◽  
Injection Line ◽  
Solid Liquid

The hydrodynamic behavior of gas-liquid-solids in a modified GLCC© has been studied for the first time experimentally and theoretically. A GLCC© experimental facility has been designed, constructed and utilized to acquire data on gas-solid-liquid flow in both upstream 2-inch injection line horizontal section and in the 3-inch GLCC©. Experimental data have been acquired for the minimum gas velocity required to transport the solids up to the liquid injection point, and for the minimum liquid injection rate necessary to wet the solids and capture them in the liquid phase. The data have been acquired for 4 solid particle sizes of 5 μm, 25 μm, 50 μm and 150 μm. A mechanistic model has been developed or modified for solids transport/ separation, for the prediction of the minimum transport gas velocity, and the required minimum liquid injection rate. A comparison between the model prediction and the acquired experimental data shows good agreement. The average relative error for minimum transport gas and liquid velocities are, 4.3% and 9.55%, respectively.

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