scholarly journals Genetic diversity and thermal performance in invasive and native populations of African fig flies

2019 ◽  
Author(s):  
Aaron A. Comeault ◽  
Jeremy Wang ◽  
Silas Tittes ◽  
Kristin Isbell ◽  
Spencer Ingley ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Thermal Performance ◽  
Parameter Estimates ◽  
Congeneric Species ◽  
Genome Sequences ◽  
Recombination Rates ◽  
Non Invasive ◽  
Thermal Niche ◽  
Performance Curves ◽  
Native Populations

AbstractDuring biological invasions, alien populations can suffer losses of genetic diversity that are predicted to negatively impact their fitness/performance. Using genome sequences, we show that invasive populations of the African fig fly, Zaprionus indianus, have lower levels of genetic diversity compared to native populations, and that genetic diversity is lost more in regions of the genome with low recombination rates. However, genetic diversity remains as high or higher in invasive populations than in populations of non-invasive congeneric species. We then use parameter estimates from thermal performance curves measured for 13 species of Zaprionus to show that Z. indianus has the broadest thermal niche of measured species, and that performance does not differ between invasive and native populations. These results illustrate how aspects of genetic diversity in invasive species can be decoupled from measures of fitness, and that a broad thermal niche may have helped facilitate Z. indianus’s range expansion.

scholarly journals Genetic Diversity and Thermal Performance in Invasive and Native Populations of African Fig Flies

2020 ◽  
Vol 37 (7) ◽  
pp. 1893-1906 ◽  
Author(s):  
Aaron A Comeault ◽  
Jeremy Wang ◽  
Silas Tittes ◽  
Kristin Isbell ◽  
Spencer Ingley ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Thermal Performance ◽  
Orthologous Gene ◽  
Parameter Estimates ◽  
Native Range ◽  
Recombination Rates ◽  
Thermal Niche ◽  
Genome Wide ◽  
Native Populations ◽  
Interspecific Comparisons

Abstract During biological invasions, invasive populations can suffer losses of genetic diversity that are predicted to negatively impact their fitness/performance. Despite examples of invasive populations harboring lower diversity than conspecific populations in their native range, few studies have linked this lower diversity to a decrease in fitness. Using genome sequences, we show that invasive populations of the African fig fly, Zaprionus indianus, have less genetic diversity than conspecific populations in their native range and that diversity is proportionally lower in regions of the genome experiencing low recombination rates. This result suggests that selection may have played a role in lowering diversity in the invasive populations. We next use interspecific comparisons to show that genetic diversity remains relatively high in invasive populations of Z. indianus when compared with other closely related species. By comparing genetic diversity in orthologous gene regions, we also show that the genome-wide landscape of genetic diversity differs between invasive and native populations of Z. indianus indicating that invasion not only affects amounts of genetic diversity but also how that diversity is distributed across the genome. Finally, we use parameter estimates from thermal performance curves for 13 species of Zaprionus to show that Z. indianus has the broadest thermal niche of measured species, and that performance does not differ between invasive and native populations. These results illustrate how aspects of genetic diversity in invasive species can be decoupled from measures of fitness, and that a broad thermal niche may have helped facilitate Z. indianus’s range expansion.

scholarly journals Antagonistic effects of intraspecific cooperation and interspecific competition on thermal performance

eLife ◽  
2020 ◽  
Vol 9 ◽  
Author(s):  
Hsiang-Yu Tsai ◽  
Dustin R Rubenstein ◽  
Bo-Fei Chen ◽  
Mark Liu ◽  
Shih-Fan Chan ◽  
...  
Keyword(s):  
Thermal Performance ◽  
Abiotic Factors ◽  
Biotic Interactions ◽  
Niche Width ◽  
Burying Beetle ◽  
Thermal Niche ◽  
Thermal Performance Curve ◽  
Performance Curves ◽  
Species Specific ◽  
The Relationship

Understanding how climate-mediated biotic interactions shape thermal niche width is critical in an era of global change. Yet, most previous work on thermal niches has ignored detailed mechanistic information about the relationship between temperature and organismal performance, which can be described by a thermal performance curve. Here, we develop a model that predicts the width of thermal performance curves will be narrower in the presence of interspecific competitors, causing a species’ optimal breeding temperature to diverge from that of its competitor. We test this prediction in the Asian burying beetle Nicrophorus nepalensis, confirming that the divergence in actual and optimal breeding temperatures is the result of competition with their primary competitor, blowflies. However, we further show that intraspecific cooperation enables beetles to outcompete blowflies by recovering their optimal breeding temperature. Ultimately, linking abiotic factors and biotic interactions on niche width will be critical for understanding species-specific responses to climate change.

scholarly journals Antagonistic Effects of Intraspecific Cooperation and Interspecific Competition on Thermal Performance

2020 ◽  
Author(s):  
Hsiang-Yu Tsai ◽  
Dustin R. Rubenstein ◽  
Bo-Fei Chen ◽  
Mark Liu ◽  
Shih-Fan Chan ◽  
...  
Keyword(s):  
Thermal Performance ◽  
Abiotic Factors ◽  
Biotic Interactions ◽  
Niche Width ◽  
Burying Beetle ◽  
Thermal Niche ◽  
Thermal Performance Curve ◽  
Performance Curves ◽  
Species Specific ◽  
The Relationship

AbstractUnderstanding how climate-mediated biotic interactions shape thermal niche width is critical in an era of global change. Yet, most previous work on thermal niches has ignored detailed mechanistic information about the relationship between temperature and organismal performance, which can be described by a thermal performance curve. Here, we develop a model that predicts the width of thermal performance curves will be narrower in the presence of interspecific competitors, causing a species’ optimal breeding temperature to diverge from that of a competitor. We test this prediction in the Asian burying beetle Nicrophorus nepalensis, confirming that the divergence in actual and optimal breeding temperatures is the result of competition with blowflies. However, we further show that intraspecific cooperation enables beetles to outcompete blowflies by recovering their optimal breeding temperature. Ultimately, linking direct (abiotic factors) and indirect effects (biotic interactions) on niche width will be critical for understanding species-specific responses to climate change.

scholarly journals Whole genome sequencing reveals high differentiation, low levels of genetic diversity and short runs of homozygosity among Swedish wels catfish

Heredity ◽  
2021 ◽  
Author(s):  
Axel Jensen ◽  
Mette Lillie ◽  
Kristofer Bergström ◽  
Per Larsson ◽  
Jacob Höglund
Keyword(s):  
Genetic Diversity ◽  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Whole Genome Sequencing Data ◽  
Peripheral Populations ◽  
Whole Genome ◽  
Runs Of Homozygosity ◽  
Sequencing Data ◽  
Isolated Populations ◽  
Native Populations

AbstractThe use of genetic markers in the context of conservation is largely being outcompeted by whole-genome data. Comparative studies between the two are sparse, and the knowledge about potential effects of this methodology shift is limited. Here, we used whole-genome sequencing data to assess the genetic status of peripheral populations of the wels catfish (Silurus glanis), and discuss the results in light of a recent microsatellite study of the same populations. The Swedish populations of the wels catfish have suffered from severe declines during the last centuries and persists in only a few isolated water systems. Fragmented populations generally are at greater risk of extinction, for example due to loss of genetic diversity, and may thus require conservation actions. We sequenced individuals from the three remaining native populations (Båven, Emån, and Möckeln) and one reintroduced population of admixed origin (Helge å), and found that genetic diversity was highest in Emån but low overall, with strong differentiation among the populations. No signature of recent inbreeding was found, but a considerable number of short runs of homozygosity were present in all populations, likely linked to historically small population sizes and bottleneck events. Genetic substructure within any of the native populations was at best weak. Individuals from the admixed population Helge å shared most genetic ancestry with the Båven population (72%). Our results are largely in agreement with the microsatellite study, and stresses the need to protect these isolated populations at the northern edge of the distribution of the species.

scholarly journals Limited Genetic Diversity Detected in Middle East Respiratory Syndrome-Related Coronavirus Variants Circulating in Dromedary Camels in Jordan

Viruses ◽  
2021 ◽  
Vol 13 (4) ◽  
pp. 592
Author(s):  
Stephanie N. Seifert ◽  
Jonathan E. Schulz ◽  
Stacy Ricklefs ◽  
Michael Letko ◽  
Elangeni Yabba ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Middle East ◽  
United Arab Emirates ◽  
Sequence Data ◽  
Case Fatality ◽  
High Sensitivity ◽  
Middle East Respiratory Syndrome ◽  
Full Genome Sequence ◽  
Genome Sequences ◽  
Dromedary Camels

Middle East respiratory syndrome-related coronavirus (MERS-CoV) is a persistent zoonotic pathogen with frequent spillover from dromedary camels to humans in the Arabian Peninsula, resulting in limited outbreaks of MERS with a high case-fatality rate. Full genome sequence data from camel-derived MERS-CoV variants show diverse lineages circulating in domestic camels with frequent recombination. More than 90% of the available full MERS-CoV genome sequences derived from camels are from just two countries, the Kingdom of Saudi Arabia (KSA) and United Arab Emirates (UAE). In this study, we employ a novel method to amplify and sequence the partial MERS-CoV genome with high sensitivity from nasal swabs of infected camels. We recovered more than 99% of the MERS-CoV genome from field-collected samples with greater than 500 TCID50 equivalent per nasal swab from camel herds sampled in Jordan in May 2016. Our subsequent analyses of 14 camel-derived MERS-CoV genomes show a striking lack of genetic diversity circulating in Jordan camels relative to MERS-CoV genome sequences derived from large camel markets in KSA and UAE. The low genetic diversity detected in Jordan camels during our study is consistent with a lack of endemic circulation in these camel herds and reflective of data from MERS outbreaks in humans dominated by nosocomial transmission following a single introduction as reported during the 2015 MERS outbreak in South Korea. Our data suggest transmission of MERS-CoV among two camel herds in Jordan in 2016 following a single introduction event.

scholarly journals Phytoplankton thermal responses adapt in the absence of hard thermodynamic constraints

2018 ◽  
Author(s):  
Dimitrios - Georgios Kontopoulos ◽  
Erik van Sebille ◽  
Michael Lange ◽  
Gabriel Yvon-Durocher ◽  
Timothy G. Barraclough ◽  
...  
Keyword(s):  
Thermal Performance ◽  
Thermal Sensitivity ◽  
Meta Analysis ◽  
Habitat Type ◽  
Performance Curve ◽  
Thermal Environments ◽  
Thermal Performance Curve ◽  
Performance Curves ◽  
Minor Influence ◽  
A Minor

AbstractTo better predict how populations and communities respond to climatic temperature variation, it is necessary to understand how the shape of the response of fitness-related traits to temperature evolves (the thermal performance curve). Currently, there is disagreement about the extent to which the evolution of thermal performance curves is constrained. One school of thought has argued for the prevalence of thermodynamic constraints through enzyme kinetics, whereas another argues that adaptation can—at least partly—overcome such constraints. To shed further light on this debate, we perform a phylogenetic meta-analysis of the thermal performance curves of growth rate of phytoplankton—a globally important functional group—, controlling for environmental effects (habitat type and thermal regime). We find that thermodynamic constraints have a minor influence on the shape of the curve. In particular, we detect a very weak increase of maximum performance with the temperature at which the curve peaks, suggesting a weak “hotter-is-better” constraint. Also, instead of a constant thermal sensitivity of growth across species, as might be expected from strong constraints, we find that all aspects of the thermal performance curve evolve along the phylogeny. Our results suggest that phytoplankton thermal performance curves adapt to thermal environments largely in the absence of hard thermodynamic constraints.

scholarly journals Genetic diversity and structure of Dorstenia elata (Moraceae) in an Atlantic Forest remnant

Rodriguésia ◽  
2021 ◽  
Vol 72 ◽  
Author(s):  
Liliana Aparecida Ribeiro Martins ◽  
Rodrigo Monte Lorenzoni ◽  
Ronald Martins Pereira Júnior ◽  
Fábio Demolinari de Miranda ◽  
Milene Miranda Praça Fontes ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Atlantic Forest ◽  
Shannon Index ◽  
The Road ◽  
Expected Heterozygosity ◽  
Forest Remnant ◽  
Genetic Diversity And Structure ◽  
Native Populations ◽  
The Matrix ◽  
Issr Primers

Abstract Plant species that show gregarious spatial distribution and endemism to the Atlantic Forest, such as Dorstenia elata, are particularly sensitive to the effects of genetic diversity loss. In the present study, we aimed to quantify the genetic diversity in native populations of this species in an Atlantic Forest remnant. The sample included three aggregates of individuals, and molecular characterization was performed with twelve ISSR primers. Intrapopulation analyses were based on the calculation of the Shannon index; total expected heterozygosity and the matrix of distances between pairs of individuals were also calculated. The obtained grouping dendrogram evinced the formation of two groups. Interpopulation investigations were based on the analysis of molecular variance and the estimate of historical gene flow. The results demonstrate that one group comprised the genotypes from two subpopulations, and the other contained exclusively the genotypes of a third subpopulation. The greatest genetic variability was observed within rather than among populations, indicating that the geographical distance and the road that divides the studied populations are not causing loss of genetic diversity.

scholarly journals Evolution of recombination in eutherian mammals: insights into mechanisms that affect recombination rates and crossover interference

2013 ◽  
Vol 280 (1771) ◽  
pp. 20131945 ◽  
Author(s):  
Joana Segura ◽  
Luca Ferretti ◽  
Sebastián Ramos-Onsins ◽  
Laia Capilla ◽  
Marta Farré ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Mammalian Species ◽  
Evolutionary Change ◽  
Critical Importance ◽  
Recombination Rates ◽  
Allelic Variants ◽  
Crossover Interference ◽  
Chromosomal Segregation ◽  
Low Levels ◽  
Taxonomic Groups

Recombination allows faithful chromosomal segregation during meiosis and contributes to the production of new heritable allelic variants that are essential for the maintenance of genetic diversity. Therefore, an appreciation of how this variation is created and maintained is of critical importance to our understanding of biodiversity and evolutionary change. Here, we analysed the recombination features from species representing the major eutherian taxonomic groups Afrotheria, Rodentia, Primates and Carnivora to better understand the dynamics of mammalian recombination. Our results suggest a phylogenetic component in recombination rates (RRs), which appears to be directional, strongly punctuated and subject to selection. Species that diversified earlier in the evolutionary tree have lower RRs than those from more derived phylogenetic branches. Furthermore, chromosome-specific recombination maps in distantly related taxa show that crossover interference is especially weak in the species with highest RRs detected thus far, the tiger. This is the first example of a mammalian species exhibiting such low levels of crossover interference, highlighting the uniqueness of this species and its relevance for the study of the mechanisms controlling crossover formation, distribution and resolution.

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