scholarly journals Hybridizing salamanders experience accelerated diversification

2019 ◽  
Author(s):  
Austin H. Patton ◽  
Mark J. Margres ◽  
Brendan Epstein ◽  
Jon Eastman ◽  
Luke J. Harmon ◽  
...  
Keyword(s):  
Species Diversity ◽  
Strong Evidence ◽  
Diversification Rates ◽  
Extinction Rates ◽  
Speciation Rates ◽  
Evolutionary Role ◽  
Taxonomic Order

ABSTRACTWhether hybridization generates or erodes species diversity has long been debated, but to date most studies have been conducted at small taxonomic scales. Salamanders (order Caudata) represent a taxonomic order in which hybridization plays a prevalent ecological and evolutionary role. We employed a recently developed model of trait-dependent diversification to test the hypothesis that hybridization impacts the diversification dynamics of species that are currently hybridizing. We find strong evidence supporting this hypothesis, showing that hybridizing salamander lineages have significantly greater net-diversification rates than non-hybridizing lineages. This pattern is driven by concurrently increased speciation rates and decreased extinction rates in hybridizing lineages. Our results support the hypothesis that hybridization can act as a generative force in macroevolutionary diversification.

scholarly journals Reconciliation ecology and the future of species diversity

Oryx ◽  
2003 ◽  
Vol 37 (2) ◽  
pp. 194-205 ◽  
Author(s):  
Michael L. Rosenzweig
Keyword(s):  
Steady State ◽  
Species Diversity ◽  
Natural Area ◽  
Reconciliation Ecology ◽  
Anthropogenic Habitats ◽  
Extinction Rates ◽  
Broad Array ◽  
Speciation Rates ◽  
Species Area ◽  
Biogeographical Province

Species-area relationships (SPARs) dictate a sea change in the strategies of biodiversity conservation. SPARs exist at three ecological scales: Sample-area SPARs (a larger area within a biogeographical province will tend to include more habitat types, and thus more species, than a smaller one), Archipelagic SPARs (the islands of an archipelago show SPARs that combine the habitat-sampling process with the problem of dispersal to an island), and Interprovincial SPARs (other things being equal, the speciation rates of larger biogeographical provinces are higher and their extinction rates are lower, leading to diversities in proportion to provincial area). SPARs are the products of steady-state dynamics in diversity, and such dynamics appears to have characterized the earth for most of the last 500 million years. As people reduce the area available to wild species, they impose a linear reduction of the earth's species diversity that will follow the largest of these scales, i.e. each 1% reduction of natural area will cost about 1% of steady-state diversity. Reserving small tracts of wild habitat can only delay these reductions. But we can stop most of them by redesigning anthropogenic habitats so that their use is compatible with use by a broad array of other species. That is reconciliation ecology. Many pilot projects, whether intentionally or inadvertently espousing reconciliation ecology, are demonstrating that it can be done.

scholarly journals How humans drive speciation as well as extinction

2016 ◽  
Vol 283 (1833) ◽  
pp. 20160600 ◽  
Author(s):  
J. W. Bull ◽  
M. Maron
Keyword(s):  
Species Diversity ◽  
Human Activities ◽  
Rapid Evolution ◽  
Novel Ecosystem ◽  
No Net Loss ◽  
Extinction Rates ◽  
Trade Offs ◽  
Speciation Rates ◽  
Nuanced Understanding ◽  
Comparable Magnitude

A central topic for conservation science is evaluating how human activities influence global species diversity. Humanity exacerbates extinction rates. But by what mechanisms does humanity drive the emergence of new species? We review human-mediated speciation, compare speciation and known extinctions, and discuss the challenges of using net species diversity as a conservation objective. Humans drive rapid evolution through relocation, domestication, hunting and novel ecosystem creation—and emerging technologies could eventually provide additional mechanisms. The number of species relocated, domesticated and hunted during the Holocene is of comparable magnitude to the number of observed extinctions. While instances of human-mediated speciation are known, the overall effect these mechanisms have upon speciation rates has not yet been quantified. We also explore the importance of anthropogenic influence upon divergence in microorganisms. Even if human activities resulted in no net loss of species diversity by balancing speciation and extinction rates, this would probably be deemed unacceptable. We discuss why, based upon ‘no net loss’ conservation literature—considering phylogenetic diversity and other metrics, risk aversion, taboo trade-offs and spatial heterogeneity. We conclude that evaluating speciation alongside extinction could result in more nuanced understanding of biosphere trends, clarifying what it is we actually value about biodiversity.

scholarly journals Detecting hidden diversification shifts in models of trait-dependent speciation and extinction

2015 ◽  
Author(s):  
Jeremy M Beaulieu ◽  
Brian C O'Meara
Keyword(s):  
Empirical Data ◽  
Diversification Rate ◽  
Transition Rates ◽  
Diversification Rates ◽  
Extinction Rates ◽  
State Dependent ◽  
Speciation Rates ◽  
Nuanced Understanding ◽  
Hidden States ◽  
Major Criticism

The distribution of diversity can vary considerably from clade to clade. Attempts to understand these patterns often employ state-dependent speciation and extinction models to determine whether the evolution of a particular novel trait has increased speciation rates and/or decreased their extinction rates. It is still unclear, however, whether these models are uncovering important drivers of diversification, or whether they are simply pointing to more complex patterns involving many unmeasured and co-distributed factors. Here we describe an extension to the popular state-dependent speciation and extinction models that specifically accounts for the presence of unmeasured factors that could impact diversification rates estimated for the states of any observed trait, addressing at least one major criticism of BiSSE methods. Specifically, our model, which we refer to as HiSSE (Hidden-State Speciation and Extinction), assumes that related to each observed state in the model are "hidden" states that exhibit potentially distinct diversification dynamics and transition rates than the observed states in isolation. We also demonstrate how our model can be used as character-independent diversification (CID) models that allow for a complex diversification process that is independent of the evolution of a character. Under rigorous simulation tests and when applied to empirical data, we find that HiSSE performs reasonably well, and can at least detect net diversification rate differences between observed and hidden states and detect when diversification rate differences do not correlate with the observed states. We discuss the remaining issues with state-dependent speciation and extinction models in general, and the important ways in which HiSSE provides a more nuanced understanding of trait-dependent diversification.

scholarly journals Geographic contingency, not species sorting, dominates macroevolutionary dynamics in an extinct clade of neogastropods (Volutospina; Volutidae)

Paleobiology ◽  
2021 ◽  
pp. 1-15
Author(s):  
Dana S. Friend ◽  
Brendan M. Anderson ◽  
Warren D. Allmon
Keyword(s):  
Middle Eocene ◽  
Ecological Factors ◽  
Geographic Range ◽  
Late Eocene ◽  
Range Size ◽  
Species Sorting ◽  
Extinction Rates ◽  
Geographic Range Size ◽  
Speciation Rates ◽  
Planktotrophic Larvae

Abstract Rates of speciation and extinction are often linked to many ecological factors, traits (emergent and nonemergent) such as environmental tolerance, body size, feeding type, and geographic range. Marine gastropods in particular have been used to examine the role of larval dispersal in speciation. However, relatively few studies have been conducted placing larval modes in species-level phylogenetic context. Those that have, have not incorporated fossil data, while landmark macroevolutionary studies on fossil clades have not considered both phylogenetic context and net speciation (speciation–extinction) rates. This study utilizes Eocene volutid Volutospina species from the U.S. Gulf Coastal Plain and the Hampshire Basin, U.K., to explore the relationships among larval mode, geographic range, and duration. Based on the phylogeny of these Volutospina, we calculated speciation and extinction rates in order to compare the macroevolutionary effects of larval mode. Species with planktotrophic larvae had a median duration of 9.7 Myr, which compared significantly to 4.7 Myr for those with non-planktotrophic larvae. Larval mode did not significantly factor into geographic-range size, but U.S. and U.K. species do differ, indicating a locality-specific component to maximum geographic-range size. Non-planktotrophs (NPTs)were absent among the Volutospina species during the Paleocene–early Eocene. The relative proportions of NPTs increased in the early middle Eocene, and the late Eocene was characterized by disappearance of planktotrophs (PTs). The pattern of observed lineage diversity shows an increasing preponderance of NPTs; however, this is clearly driven by a dramatic extinction of PTs, rather than higher NPT speciation rates during the late Eocene. This study adds nuance to paleontology's understanding of the macroevolutionary consequences of larval mode.

scholarly journals Exploring diversification drivers in golden orbweavers

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Eva Turk ◽  
Simona Kralj-Fišer ◽  
Matjaž Kuntner
Keyword(s):  
Environmental Factors ◽  
Sexual Size Dimorphism ◽  
Male Body ◽  
Diversification Rates ◽  
Size Dimorphism ◽  
Extinction Rates ◽  
Intermediate Phenotypes ◽  
Dispersal Propensity ◽  
The Tropics ◽  
Class Models

AbstractHeterogeneity in species diversity is driven by the dynamics of speciation and extinction, potentially influenced by organismal and environmental factors. Here, we explore macroevolutionary trends on a phylogeny of golden orbweavers (spider family Nephilidae). Our initial inference detects heterogeneity in speciation and extinction, with accelerated extinction rates in the extremely sexually size dimorphic Nephila and accelerated speciation in Herennia, a lineage defined by highly derived, arboricolous webs, and pronounced island endemism. We evaluate potential drivers of this heterogeneity that relate to organisms and their environment. Primarily, we test two continuous organismal factors for correlation with diversification in nephilids: phenotypic extremeness (female and male body length, and sexual size dimorphism as their ratio) and dispersal propensity (through range sizes as a proxy). We predict a bell-shaped relationship between factor values and speciation, with intermediate phenotypes exhibiting highest diversification rates. Analyses using SSE-class models fail to support our two predictions, suggesting that phenotypic extremeness and dispersal propensity cannot explain patterns of nephilid diversification. Furthermore, two environmental factors (tropical versus subtropical and island versus continental species distribution) indicate only marginal support for higher speciation in the tropics. Although our results may be affected by methodological limitations imposed by a relatively small phylogeny, it seems that the tested organismal and environmental factors play little to no role in nephilid diversification. In the phylogeny of golden orbweavers, the recent hypothesis of universal diversification dynamics may be the simplest explanation of macroevolutionary patterns.

scholarly journals Interaction Between Ploidy, Breeding System, and Lineage Diversification

2019 ◽  
Author(s):  
Rosana Zenil-Ferguson ◽  
J. Gordon Burleigh ◽  
William A. Freyman ◽  
Boris Igić ◽  
Itay Mayrose ◽  
...  
Keyword(s):  
Breeding System ◽  
Whole Genome Duplication ◽  
Genome Duplication ◽  
Whole Genome ◽  
Self Incompatibility ◽  
Evolutionary Pathway ◽  
Diversification Rates ◽  
Extinction Rates ◽  
Biological Hierarchy ◽  
Lineage Diversification

AbstractIf particular traits consistently affect rates of speciation and extinction, broad macroevolutionary patterns can be understood as consequences of selection at high levels of the biological hierarchy. Identifying traits associated with diversification rate differences is complicated by the wide variety of characters under consideration and the statistical challenges of testing for associations from comparative phylogenetic data. Ploidy (diploid vs. polyploid states) and breeding system (self-incompatible vs. self-compatible states) have been repeatedly suggested as possible drivers of differential diversification. We investigate the connections of these traits, including their interaction, to speciation and extinction rates in Solanaceae. We show that the effect of ploidy on diversification can be largely explained by its correlation with breeding system and that additional unknown factors, alongside breeding system, influence diversification rates. These results are largely robust to allowing for diploidization. Finally, we find that the most common evolutionary pathway to polyploidy in Solanaceae occurs via direct breakdown of self-incompatibility by whole genome duplication, rather than indirectly via breakdown followed by polyploidization.

The improbability of animal phyla with few species

Paleobiology ◽  
1983 ◽  
Vol 9 (2) ◽  
pp. 97-106 ◽  
Author(s):  
Richard R. Strathmann ◽  
Montgomery Slatkin
Keyword(s):  
Short Duration ◽  
Alternative Model ◽  
Death Process ◽  
Birth And Death Process ◽  
Monophyletic Clade ◽  
Number Of Species ◽  
Extinction Rates ◽  
Animal Phyla ◽  
Speciation Rates ◽  
Initial Radiation

At present there are many animal phyla that contain only a few species. The existence of these small phyla can be used to test assumptions about speciation and extinction in multicellular animals.We first model the number of species in a monophyletic clade with a birth and death process that assumes rates of speciation and extinction are constant. If no new phyla have evolved since the Cambrian and speciation and extinction rates for minor phyla are similar to or greater than those estimated from fossils, then our model shows that the probabilities of minor phyla surviving to the present are small. Random variation in extinction and speciation rates does not improve the chances for persistence. If speciation rates exceed extinction rates at the initial radiation of the clade, but before the clade becomes large, speciation rates come to equal extinction rates and both are low, persistence from before the Ordovician up to the present becomes likely. These models show that if speciation and extinction rates are independent of the number of species in a clade, then conditions before the Ordovician strongly influence today's distribution of species among taxa.We also discuss a model in which speciation and extinction rates depend on the number of species in a clade. This alternative model can account for the persistence of phyla with few species to the present and predicts a short duration for phyla that did not exceed a threshold number of species.

On the role of enemies in divergence and diversification of prey: a review and synthesis

2005 ◽  
Vol 83 (7) ◽  
pp. 894-910 ◽  
Author(s):  
Steven M Vamosi
Keyword(s):  
Visual Cues ◽  
Phenotypic Diversity ◽  
Theoretical Models ◽  
Ecological Interactions ◽  
Closely Related Species ◽  
Diversification Rates ◽  
Extinction Rates ◽  
Phenotypic Divergence ◽  
Experimental Approaches

Understanding the contribution of ecological interactions to the origin and maintenance of diversity is a fundamental challenge for ecologists and evolutionary biologists, and one that is currently receiving a great deal of attention. Natural enemies (e.g., predators, parasites, and herbivores) are ubiquitous in food webs and are predicted to have significant impacts on phenotypic diversity and on speciation, and extinction rates of their prey. Spurred by the development of a theoretical framework beginning in the late 1970s, there is now a growing body of literature that addresses the effects of enemy–prey interactions on the evolution of prey. A number of theoretical models predict that enemies can produce phenotypic divergence between closely related species, even in the absence of interspecific competition for resources. Effects on diversification of prey are more variable, and enemies may either enhance or depress speciation and extinction rates of their prey. Empirical evidences from a number of study systems, notably those involving predators and prey in aquatic environments and interactions between insects and flowering plants, confirm both predictions. There is now considerable evidence for the role of enemies, especially those that are size-selective or use visual cues when identifying suitable prey, on phenotypic divergence of sympatric and allopatric taxa. Enemies may spur diversification rates in certain groups under some circumstances, and hinder diversification rates in other cases. I suggest that further research should focus on the role of enemies in diversification of prey, with significant insights likely to be the product of applying traditional experimental approaches and emerging comparative phylogenetic methods.

scholarly journals Evolutionary rates of mitochondrial genomes correspond to diversification rates and to contemporary species richness in birds and reptiles

2010 ◽  
Vol 277 (1700) ◽  
pp. 3587-3592 ◽  
Author(s):  
Soo Hyung Eo ◽  
J. Andrew DeWoody
Keyword(s):  
Species Richness ◽  
Nuclear Data ◽  
Synonymous Substitution ◽  
Evolutionary Rates ◽  
Rate Variation ◽  
Substitution Rates ◽  
Diversification Rates ◽  
Extinction Process ◽  
Molecular Evolutionary Rates ◽  
Speciation Rates

Rates of biological diversification should ultimately correspond to rates of genome evolution. Recent studies have compared diversification rates with phylogenetic branch lengths, but incomplete phylogenies hamper such analyses for many taxa. Herein, we use pairwise comparisons of confamilial sauropsid (bird and reptile) mitochondrial DNA (mtDNA) genome sequences to estimate substitution rates. These molecular evolutionary rates are considered in light of the age and species richness of each taxonomic family, using a random-walk speciation–extinction process to estimate rates of diversification. We find the molecular clock ticks at disparate rates in different families and at different genes. For example, evolutionary rates are relatively fast in snakes and lizards, intermediate in crocodilians and slow in turtles and birds. There was also rate variation across genes, where non-synonymous substitution rates were fastest at ATP8 and slowest at CO 3. Family-by-gene interactions were significant, indicating that local clocks vary substantially among sauropsids. Most importantly, we find evidence that mitochondrial genome evolutionary rates are positively correlated with speciation rates and with contemporary species richness. Nuclear sequences are poorly represented among reptiles, but the correlation between rates of molecular evolution and species diversification also extends to 18 avian nuclear genes we tested. Thus, the nuclear data buttress our mtDNA findings.

scholarly journals Hummingbird pollination and the diversification of angiosperms: an old and successful association in Gesneriaceae

2017 ◽  
Vol 284 (1852) ◽  
pp. 20162816 ◽  
Author(s):  
Martha Liliana Serrano-Serrano ◽  
Jonathan Rolland ◽  
John L. Clark ◽  
Nicolas Salamin ◽  
Mathieu Perret
Keyword(s):  
South America ◽  
Functional Groups ◽  
High Frequency ◽  
Insect Pollination ◽  
Diversification Rates ◽  
Extinction Rates ◽  
Hummingbird Pollination ◽  
Rapid Diversification ◽  
Specific Association ◽  
Floral Specialization

The effects of specific functional groups of pollinators in the diversification of angiosperms are still to be elucidated. We investigated whether the pollination shifts or the specific association with hummingbirds affected the diversification of a highly diverse angiosperm lineage in the Neotropics. We reconstructed a phylogeny of 583 species from the Gesneriaceae family and detected diversification shifts through time, inferred the timing and amount of transitions among pollinator functional groups, and tested the association between hummingbird pollination and speciation and extinction rates. We identified a high frequency of pollinator transitions, including reversals to insect pollination. Diversification rates of the group increased through time since 25 Ma, coinciding with the evolution of hummingbird-adapted flowers and the arrival of hummingbirds in South America. We showed that plants pollinated by hummingbirds have a twofold higher speciation rate compared with plants pollinated by insects, and that transitions among functional groups of pollinators had little impact on the diversification process. We demonstrated that floral specialization on hummingbirds for pollination has triggered rapid diversification in the Gesneriaceae family since the Early Miocene, and that it represents one of the oldest identified plant–hummingbird associations. Biotic drivers of plant diversification in the Neotropics could be more related to this specific type of pollinator (hummingbirds) than to shifts among different functional groups of pollinators.

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