scholarly journals Ancestral hybridisation facilitated species diversification in the Lake Malawi cichlid fish adaptive radiation

2019 ◽  
Author(s):  
Hannes Svardal ◽  
Fu Xiang Quah ◽  
Milan Malinsky ◽  
Benjamin P Ngatunga ◽  
Eric A Miska ◽  
...  
Keyword(s):  
Adaptive Radiation ◽  
Large Scale ◽  
Lake Victoria ◽  
Cichlid Fish ◽  
Lake Malawi ◽  
Raw Material ◽  
Founder Population ◽  
Cichlid Species ◽  
Show Evidence ◽  
Adaptive Radiations

AbstractThe adaptive radiation of cichlid fishes in East Afrian Lake Malawi encompasses over 500 species that are believed to have evolved within the last 800 thousand years from a common founder population. It has been proposed that hybridisation between ancestral lineages can provide the genetic raw material to fuel such exceptionally high diversification rates, and evidence for this has recently been presented for the Lake Victoria Region cichlid superflock. Here we report that Lake Malawi cichlid genomes also show evidence of hybridisation between two lineages that split 3-4 million years ago, today represented by Lake Victoria cichlids and the riverine Astatotilapia sp. ‘ruaha blue’. The two ancestries in Malawi cichlid genomes are present in large blocks of several kilobases, but there is little variation in this pattern between Malawi cichlid species, suggesting that the large-scale mosaic structure of the genomes was largely established prior to the radiation. Nevertheless, tens of thousands of polymorphic variants apparently derived from the hybridisation are interspersed in the genomes. These loci show a striking excess of differentiation across ecological subgroups in the Lake Malawi cichlid assemblage, and parental alleles sort differentially into benthic and pelagic Malawi cichlid lineages, consistent with strong differential selection on these loci during species divergence. Furthermore, these loci are enriched for genes involved in immune response and vision, including opsin genes previously identified as important for speciation. Our results reinforce the role of ancestral hybridisation in explosive diversification by demonstrating its significance in one of the largest recent vertebrate adaptive radiations.

scholarly journals Ancestral Hybridization Facilitated Species Diversification in the Lake Malawi Cichlid Fish Adaptive Radiation

2019 ◽  
Vol 37 (4) ◽  
pp. 1100-1113 ◽  
Author(s):  
Hannes Svardal ◽  
Fu Xiang Quah ◽  
Milan Malinsky ◽  
Benjamin P Ngatunga ◽  
Eric A Miska ◽  
...  
Keyword(s):  
Adaptive Radiation ◽  
Large Scale ◽  
Lake Victoria ◽  
Cichlid Fish ◽  
Lake Malawi ◽  
Raw Material ◽  
Founder Population ◽  
East African ◽  
Cichlid Species ◽  
Show Evidence

Abstract The adaptive radiation of cichlid fishes in East African Lake Malawi encompasses over 500 species that are believed to have evolved within the last 800,000 years from a common founder population. It has been proposed that hybridization between ancestral lineages can provide the genetic raw material to fuel such exceptionally high diversification rates, and evidence for this has recently been presented for the Lake Victoria region cichlid superflock. Here, we report that Lake Malawi cichlid genomes also show evidence of hybridization between two lineages that split 3–4 Ma, today represented by Lake Victoria cichlids and the riverine Astatotilapia sp. “ruaha blue.” The two ancestries in Malawi cichlid genomes are present in large blocks of several kilobases, but there is little variation in this pattern between Malawi cichlid species, suggesting that the large-scale mosaic structure of the genomes was largely established prior to the radiation. Nevertheless, tens of thousands of polymorphic variants apparently derived from the hybridization are interspersed in the genomes. These loci show a striking excess of differentiation across ecological subgroups in the Lake Malawi cichlid assemblage, and parental alleles sort differentially into benthic and pelagic Malawi cichlid lineages, consistent with strong differential selection on these loci during species divergence. Furthermore, these loci are enriched for genes involved in immune response and vision, including opsin genes previously identified as important for speciation. Our results reinforce the role of ancestral hybridization in explosive diversification by demonstrating its significance in one of the largest recent vertebrate adaptive radiations.

scholarly journals The Adaptive Radiation of Cichlid Fish in Lake Tanganyika: A Morphological Perspective

2011 ◽  
Vol 2011 ◽  
pp. 1-14 ◽  
Author(s):  
Tetsumi Takahashi ◽  
Stephan Koblmüller
Keyword(s):  
East Africa ◽  
Adaptive Radiation ◽  
Lake Tanganyika ◽  
Cichlid Fish ◽  
Ancient Lakes ◽  
Species Assemblage ◽  
Cichlid Species ◽  
Morphological Studies ◽  
Rapid Speciation ◽  
Explosive Speciation

Lake Tanganyika is the oldest of the Great Ancient Lakes in the East Africa. This lake harbours about 250 species of cichlid fish, which are highly diverse in terms of morphology, behaviour, and ecology. Lake Tanganyika's cichlid diversity has evolved through explosive speciation and is treated as a textbook example of adaptive radiation, the rapid differentiation of a single ancestor into an array of species that differ in traits used to exploit their environments and resources. To elucidate the processes and mechanisms underlying the rapid speciation and adaptive radiation of Lake Tanganyika's cichlid species assemblage it is important to integrate evidence from several lines of research. Great efforts have been, are, and certainly will be taken to solve the mystery of how so many cichlid species evolved in so little time. In the present review, we summarize morphological studies that relate to the adaptive radiation of Lake Tanganyika's cichlids and highlight their importance for understanding the process of adaptive radiation.

scholarly journals Visual adaptation and microhabitat choice in Lake Victoria cichlid fish

2019 ◽  
Vol 6 (3) ◽  
pp. 181876
Author(s):  
Daniel Mameri ◽  
Corina van Kammen ◽  
Ton G. G. Groothuis ◽  
Ole Seehausen ◽  
Martine E. Maan
Keyword(s):  
Broad Spectrum ◽  
Lake Victoria ◽  
Natural Habitat ◽  
Habitat Preferences ◽  
Cichlid Fish ◽  
Visual Sensitivity ◽  
Visual Adaptation ◽  
Repeated Testing ◽  
Cichlid Species ◽  
Habitat Matching

When different genotypes choose different habitats to better match their phenotypes, genetic differentiation within a population may be promoted. Mating within those habitats may subsequently contribute to reproductive isolation. In cichlid fish, visual adaptation to alternative visual environments is hypothesized to contribute to speciation. Here, we investigated whether variation in visual sensitivity causes different visual habitat preferences, using two closely related cichlid species that occur at different but overlapping water depths in Lake Victoria and that differ in visual perception ( Pundamilia spp.). In addition to species differences, we explored potential effects of visual plasticity, by rearing fish in two different light conditions: broad-spectrum (mimicking shallow water) and red-shifted (mimicking deeper waters). Contrary to expectations, fish did not prefer the light environment that mimicked their typical natural habitat. Instead, we found an overall preference for the broad-spectrum environment. We also found a transient influence of the rearing condition, indicating that the assessment of microhabitat preference requires repeated testing to control for familiarity effects. Together, our results show that cichlid fish exert visual habitat preference but do not support straightforward visual habitat matching.

scholarly journals Continuous 1.3-million-year record of East African hydroclimate, and implications for patterns of evolution and biodiversity

2015 ◽  
Vol 112 (51) ◽  
pp. 15568-15573 ◽  
Author(s):  
Robert P. Lyons ◽  
Christopher A. Scholz ◽  
Andrew S. Cohen ◽  
John W. King ◽  
Erik T. Brown ◽  
...  
Keyword(s):  
Lake Level ◽  
Large Scale ◽  
Late Quaternary ◽  
Cichlid Fish ◽  
Biological Evolution ◽  
Distinct Species ◽  
Lake Malawi ◽  
Freshwater Ecosystems ◽  
Water Levels ◽  
Species Flock

The transport of moisture in the tropics is a critical process for the global energy budget and on geologic timescales, has markedly influenced continental landscapes, migratory pathways, and biological evolution. Here we present a continuous, first-of-its-kind 1.3-My record of continental hydroclimate and lake-level variability derived from drill core data from Lake Malawi, East Africa (9–15° S). Over the Quaternary, we observe dramatic shifts in effective moisture, resulting in large-scale changes in one of the world’s largest lakes and most diverse freshwater ecosystems. Results show evidence for 24 lake level drops of more than 200 m during the Late Quaternary, including 15 lowstands when water levels were more than 400 m lower than modern. A dramatic shift is observed at the Mid-Pleistocene Transition (MPT), consistent with far-field climate forcing, which separates vastly different hydroclimate regimes before and after ∼800,000 years ago. Before 800 ka, lake levels were lower, indicating a climate drier than today, and water levels changed frequently. Following the MPT high-amplitude lake level variations dominate the record. From 800 to 100 ka, a deep, often overfilled lake occupied the basin, indicating a wetter climate, but these highstands were interrupted by prolonged intervals of extreme drought. Periods of high lake level are observed during times of high eccentricity. The extreme hydroclimate variability exerted a profound influence on the Lake Malawi endemic cichlid fish species flock; the geographically extensive habitat reconfiguration provided novel ecological opportunities, enabling new populations to differentiate rapidly to distinct species.

scholarly journals Four new species of Cichlidogyrus (Platyhelminthes, Monogenea, Dactylogyridae) from Lake Victoria haplochromine cichlid fishes, with the redescription of C. bifurcatus and C. longipenis

2021 ◽  
Author(s):  
Tiziana P Gobbin ◽  
Maarten PM Vanhove ◽  
Ole Seehausen ◽  
Martine E Maan ◽  
Antoine Pariselle
Keyword(s):  
Nous Avons ◽  
Host Specificity ◽  
Lake Victoria ◽  
Model Systems ◽  
Zoological Nomenclature ◽  
Cichlid Species ◽  
African Great Lakes ◽  
Adaptive Radiations ◽  
African Cichlids ◽  
Host Parasite

AbstractAfrican cichlids are model systems for evolutionary studies and for host-parasite interactions, because of their adaptive radiations and because they harbour many species of monogenean parasites with high host-specificity. Here, we sampled five locations in southern Lake Victoria, the youngest of the African Great Lakes. We surveyed gillinfecting monogeneans from 18 cichlid species belonging to the Lake Victoria radiation superflock and two cichlid species representing two older and distantly related lineages. We found one species of Gyrodactylus (Gyrodactylidae, Monogenea), Gyrodactylus sturmbaueri Vanhove, Snoeks, Volckaert & Huyse, 2011, and seven species of Cichlidogyrus (Dactylogyridae, Monogenea). Four species are herein described: Cichlidogyrus pseudodossoui n. sp., C. nyanza n. sp., C. furu n. sp., C. vetusmolendarius n. sp.. Another species is reported but not formally described (because of few specimens and morphological similarity with C. furu n. sp.). Two other species are redescribed: Cichlidogyrus bifurcatus Paperna, 1960 and C. longipenis Paperna & Thurston, 1969. Our results confirm that the monogenean fauna of Victorian littoral cichlids displays lower species richness and lower host-specificity than that of Lake Tanganyika littoral cichlids. In C. furu n. sp., hooks V are clearly longer than the other hooks, highlighting the need to re-evaluate the current classification system of haptoral configurations that considers hook pairs III-VII as rather uniform. Some morphological features of C. bifurcatus, C. longipenis and C. nyanza n. sp. suggest that these are closely related to other congeners that infect haplochromines. We also found morphological indications that representatives of Cichlidogyrus colonised Lake Victoria haplochromines or their ancestors at least twice, which is in line with the Lake Victoria superflock being colonized by two cichlid tribes (Haplochromini and Oreochromini).DisclaimerThis preprint is disclaimed for purposes of Zoological Nomenclature in accordance with the International Code of Zoological Nomenclature, Fourth Edition Articles 8.2 and 8.3 (ICZN 1999). No new names or nomenclatural changes are available from statements in this preprint.Résumé - Quatre espèces nouvelles de Cichlidogyrus (Platyhelminthes, Monogenea, Dactylogyridae) parasites d’haplochrominé (Cichlidae) du lac Victoria, avec la redescription de C. bifurcatus and C. longipenisA cause des radiations adaptatives qu’ils ont subies, les cichlidés africain sont des systèmes modèles pour étudier l’évolution, mais aussi les relations hôtes/parasites, car ils hébergent de nombreuses espèces de Monogènes parasites qui présentent une spécificité étroite vis-à-vis de leurs hôtes. Dans ce travail, nous avons échantillonné cinq localités dans le Sud du lac Victoria, le plus jeune des grands lacs d’Afrique de l’Est. Nous avons examiné les Monogènes présents sur les branchies de 18 espèces de Cichlidés appartenant à la radiation adaptative « superflock » du lac Victoria et de deux espèces représentant deux lignées anciennes et non étroitement apparentées. Nous avons trouvé une espèce de Gyrodactylus (Gyrodactylidae, Monogenea), Gyrodactylus sturmbaueri Vanhove, Snoeks, Volckaert & Huyse, 2011 et sept espèces de Cichlidogyrus (Dactylogyridae, Monogenea). Quatre espèces nouvelles sont décrites dans le présent travail : Cichlidogyrus pseudodossoui n. sp., C. nyanza n. sp., C. furu n. sp., C. vetusmolendarius n. sp.. Une est signalée mais non décrite formellement (trop peux d’individus recueillis, morphologiquement proche de C. furu n. sp.). Deux autres sont redécrites : Cichlidogyrus bifurcatus Paperna, 1960 and C. longipenis Paperna & Thurston, 1969. Nos résultats confirment que la faune des Monogènes des Cichlidés du lac Victoria fait preuve d’une richesse spécifique et d’une spécificité moins importante que celle du lac Tanganyika. Chez C. furu n. sp. la paire de crochet V étant nettement plus longue que les autres, il faudra reconsidérer le système de classification actuel des types de hapteurs chez les Cichlidogyrus, qui considère que tous les crochets (III à VII) ont la même taille. Quelques caractéristiques morphologiques de C. bifurcatus, C. longipenis et C. nyanza n. sp. pourraient être la preuve d’une ascendance commune avec des congénères présents chez d’autres Haplochrominés. De même, certains caractères indiqueraient que des représentants des Cichlidogyrus ont colonisé les Haplochrominés du lac Victoria, ou leurs ancêtres, au moins à deux reprises, ce qui est cohérent avec une colonisation du lac par deux lignées de cichlidés distinctes (Haplochromini and Oreochromini).

scholarly journals Back to Tanganyika: a case of recent trans-species-flock dispersal in East African haplochromine cichlid fishes

2015 ◽  
Vol 2 (3) ◽  
pp. 140498 ◽  
Author(s):  
Britta S. Meyer ◽  
Adrian Indermaur ◽  
Xenia Ehrensperger ◽  
Bernd Egger ◽  
Gaspard Banyankimbona ◽  
...  
Keyword(s):  
Lake Tanganyika ◽  
Lake Victoria ◽  
Species Flock ◽  
East African ◽  
Cichlid Species ◽  
African Great Lakes ◽  
Cichlid Fishes ◽  
Haplochromine Cichlid ◽  
Lake Victoria Region ◽  
Adaptive Radiations

The species flocks of cichlid fishes in the East African Great Lakes are the largest vertebrate adaptive radiations in the world and illustrious textbook examples of convergent evolution between independent species assemblages. Although recent studies suggest some degrees of genetic exchange between riverine taxa and the lake faunas, not a single cichlid species is known from Lakes Tanganyika, Malawi and Victoria that is derived from the radiation associated with another of these lakes. Here, we report the discovery of a haplochromine cichlid species in Lake Tanganyika, which belongs genetically to the species flock of haplochromines of the Lake Victoria region. The new species colonized Lake Tanganyika only recently, suggesting that faunal exchange across watersheds and, hence, between isolated ichthyofaunas, is more common than previously thought.

scholarly journals POPULATION GENOMIC TESTS OF MODELS OF ADAPTIVE RADIATION IN LAKE VICTORIA REGION CICHLID FISH

Evolution ◽  
2011 ◽  
Vol 65 (12) ◽  
pp. 3381-3397 ◽  
Author(s):  
Etienne Bezault ◽  
Salome Mwaiko ◽  
Ole Seehausen
Keyword(s):  
Adaptive Radiation ◽  
Lake Victoria ◽  
Cichlid Fish ◽  
Population Genomic ◽  
Lake Victoria Region

scholarly journals Depth and substratum differentiations among coexisting herbivorous cichlids in Lake Tanganyika

2016 ◽  
Vol 3 (11) ◽  
pp. 160229 ◽  
Author(s):  
Hiroki Hata ◽  
Haruki Ochi
Keyword(s):  
Adaptive Radiation ◽  
Rocky Shore ◽  
Lake Level ◽  
Lake Tanganyika ◽  
Cichlid Fish ◽  
Species Number ◽  
Niche Segregation ◽  
Cichlid Species ◽  
Feeding Territory ◽  
Shed Light

Cichlid fish in Lake Tanganyika represent a system of adaptive radiation in which eight ancestral lineages have diversified into hundreds of species through adaptation to various niches. However, Tanganyikan cichlids have been thought to be oversaturated, that is, the species number exceeds the number of niches and ecologically equivalent and competitively even species coexist. However, recent studies have shed light on niche segregation on a finer scale among apparently equivalent species. We observed depth and substratum preferences of 15 herbivorous cichlids from four ecomorphs (i.e. grazer, browser, scraper and scooper) on a rocky littoral slope for 14 years. Depth differentiation was detected among grazers that defended feeding territories and among browsers with feeding territories. Cichlid species having no feeding territory also showed specificity on depth and substratum, resulting in habitat segregation among species that belong to the same ecomorph. Phylogenetically close species did not occupy adjacent depths, nor the opposite depth zones. Our findings suggest that apparently equivalent species of the same ecomorph coexist parapatrically along depth on a few-metre scale, or coexist with different substratum preferences on the rocky shore, and this niche segregation may have been acquired by competition between encountering equivalent species through repetitive lake-level fluctuations.

scholarly journals Visual adaptation and microhabitat choice in Lake Victoria cichlid fish

2018 ◽  
Author(s):  
Daniel Mameri ◽  
Corina van Kammen ◽  
Ton G.G. Groothuis ◽  
Ole Seehausen ◽  
Martine E. Maan
Keyword(s):  
Broad Spectrum ◽  
Lake Victoria ◽  
Natural Habitat ◽  
Habitat Preferences ◽  
Cichlid Fish ◽  
Visual Sensitivity ◽  
Visual Adaptation ◽  
Repeated Testing ◽  
Cichlid Species ◽  
Habitat Matching

AbstractWhen different genotypes choose different habitats to better match their phenotypes, adaptive differentiation within a population may be promoted. Mating within those habitats may subsequently contribute to reproductive isolation. In cichlid fish, visual adaptation to alternative visual environments is hypothesised to contribute to speciation. Here, we investigated whether variation in visual sensitivity causes different visual habitat preferences, using two closely related cichlid species that occur at different but overlapping water depths in Lake Victoria and that differ in visual perception (Pundamilia sp.). In addition to species differences, we explored potential effects of visual plasticity, by rearing fish in two different light conditions: broad-spectrum (mimicking shallow water) or red-shifted (mimicking deeper waters). Contrary to expectations, fish did not prefer the light environment that mimicked their typical natural habitat. Instead, we found an overall preference for the broad-spectrum environment. We also found a transient influence of the rearing condition, indicating that assessment of microhabitat preference requires repeated testing to control for familiarity effects. Together, our results show that cichlid fish exert visual habitat preference, but do not support straightforward visual habitat matching.

scholarly journals The genetics of mate preferences in hybrids between two young and sympatric Lake Victoria cichlid species

2017 ◽  
Vol 284 (1849) ◽  
pp. 20162332 ◽  
Author(s):  
Ola Svensson ◽  
Katie Woodhouse ◽  
Cock van Oosterhout ◽  
Alan Smith ◽  
George F. Turner ◽  
...  
Keyword(s):  
Lake Victoria ◽  
Large Fraction ◽  
Cichlid Fish ◽  
Mendelian Inheritance ◽  
Mate Preferences ◽  
Hybrid Population ◽  
Single Male ◽  
F1 Hybrid ◽  
Cichlid Species ◽  
Female Mate

The genetic architecture of mate preferences is likely to affect significant evolutionary processes, including speciation and hybridization. Here, we investigate laboratory hybrids between a pair of sympatric Lake Victoria cichlid fish species that appear to have recently evolved from a hybrid population between similar predecessor species. The species demonstrate strong assortative mating in the laboratory, associated with divergent male breeding coloration (red dorsum versus blue). We show in a common garden experiment, using DNA-based paternity testing, that the strong female mate preferences among males of the two species are fully recovered in a large fraction of their F2 hybrid generation. Individual hybrid females often demonstrated consistent preferences in multiple mate choice trials (more than or equal to five) across a year or more. This result suggests that female mate preference is influenced by relatively few major genes or genomic regions. These preferences were not changed by experience of a successful spawning event with a male of the non-preferred species in a no-choice single-male trial. We found no evidence for imprinting in the F2 hybrids, although the F1 hybrid females may have been imprinted on their mothers. We discuss this nearly Mendelian inheritance of consistent innate mate preferences in the context of speciation theory.

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