scholarly journals Eukaryotic virus composition can predict the efficiency of carbon export in the global ocean

2019 ◽  
Author(s):  
Hiroto Kaneko ◽  
Romain Blanc-Mathieu ◽  
Hisashi Endo ◽  
Samuel Chaffron ◽  
Tom O. Delmont ◽  
...  
Keyword(s):  
Large Scale ◽  
Regional Scale ◽  
Deep Ocean ◽  
Global Scale ◽  
Ecosystem Dynamics ◽  
Global Ocean ◽  
Marker Genes ◽  
Carbon Export ◽  
Viral Marker ◽  
Carbon Pump

SummaryThe biological carbon pump, in which carbon fixed by photosynthesis is exported to the deep ocean through sinking, is a major process in Earth’s carbon cycle. The proportion of primary production that is exported is termed the carbon export efficiency (CEE). Based on in-lab or regional scale observations, viruses were previously suggested to affect the CEE (i.e., viral “shunt” and “shuttle”). In this study, we tested associations between viral community composition and CEE measured at a global scale. A regression model based on relative abundance of viral marker genes explained 67% of the variation in CEE. Viruses with high importance in the model were predicted to infect ecologically important hosts. These results are consistent with the view that the viral shunt and shuttle functions at a large scale and further imply that viruses likely act in this process in a way dependent on their hosts and ecosystem dynamics.

Using new observations and Machine Learning to improve organic sinking processes in the PlankTOM global ocean biogeochemical model 

2021 ◽  
Author(s):  
Anna Denvil-Sommer ◽  
Corinne Le Quéré ◽  
Erik Buitenhuis ◽  
Lionel Guidi ◽  
Jean-Olivier Irisson
Keyword(s):  
Organic Carbon ◽  
Carbon Cycle ◽  
Deep Ocean ◽  
Ecosystem Dynamics ◽  
Global Ocean ◽  
Biogeochemical Model ◽  
Carbon Export ◽  
Mixing Depth ◽  
Chl A ◽  
Biogeochemical Models

<p>A lot of effort has been put in the representation of surface ecosystem processes in global carbon cycle models, in particular through the grouping of organisms into Plankton Functional Types (PFTs) which have specific influences on the carbon cycle. In contrast, the transfer of ecosystem dynamics into carbon export to the deep ocean has received much less attention, so that changes in the representation of the PFTs do not necessarily translate into changes in sinking of particulate matter. Models constrain the air-sea CO<sub>2</sub> flux by drawing down carbon into the ocean interior. This export flux is five times as large as the CO<sub>2</sub> emitted to the atmosphere by human activities. When carbon is transported from the surface to intermediate and deep ocean, more CO<sub>2 </sub>can be absorbed at the surface. Therefore, even small variability in sinking organic carbon fluxes can have a large impact on air-sea CO<sub>2</sub> fluxes, and on the amount of CO<sub>2</sub> emissions that remain in the atmosphere.</p><p>In this work we focus on the representation of organic matter sinking in global biogeochemical models, using the PlankTOM model in its latest version representing 12 PFTs. We develop and test a methodology that will enable the systematic use of new observations to constrain sinking processes in the model. The approach is based on a Neural Network (NN) and is applied to the PlankTOM model output to test its ability to reconstruction small and large particulate organic carbon with a limited number of observations. We test the information content of geographical variables (location, depth, time of year), physical conditions (temperature, mixing depth, nutrients), and ecosystem information (CHL a, PFTs). These predictors are used in the NN to test their influence on the model-generation of organic particles and the robustness of the results. We show preliminary results using the NN approach with real plankton and particle size distribution observations from the Underwater Vision Profiler (UVP) and plankton diversity data from Tara Oceans expeditions and discuss limitations.</p>

scholarly journals <i>MEDUSA</i>: a new intermediate complexity plankton ecosystem model for the global domain

2010 ◽  
Vol 3 (4) ◽  
pp. 1939-2019 ◽  
Author(s):  
A. Yool ◽  
E. E. Popova ◽  
T. R. Anderson
Keyword(s):  
Deep Ocean ◽  
Ecosystem Model ◽  
Global Scale ◽  
Ecosystem Dynamics ◽  
Global Ocean ◽  
Full Description ◽  
State Variables ◽  
Intermediate Complexity ◽  
Nutrient Utilisation ◽  
Parameter Values

Abstract. The ongoing, anthropogenically-driven changes to the global ocean are expected to have significant consequences for plankton ecosystems in the future. Because of the role that plankton play in the ocean's "biological pump", changes in abundance, distribution and productivity will likely have additional consequences for the wider carbon cycle. Just as in the terrestrial biosphere, marine ecosystems exhibit marked diversity in species and functional types of organisms. Predicting potential change in plankton ecosystems therefore requires the use of models that are suited to this diversity, but whose parameterisation also permits robust and realistic functional behaviour. In the past decade, advances in model sophistication have attempted to address diversity, but have been criticised for doing so inaccurately or ahead of a requisite understanding of underlying processes. Here we introduce MEDUSA (Model of Ecosystem Dynamics, nutrient Utilisation, Sequestration and Acidification), a new "intermediate complexity" plankton ecosystem model that expands on traditional nutrient-phytoplankton-zooplankton-detritus (NPZD) models, and remains amenable to global-scale evaluation. MEDUSA includes the biogeochemical cycles of nitrogen, silicon and iron, broadly structured into "small" and "large" plankton size classes, of which the "large" phytoplankton class is representative of a key phytoplankton group, the diatoms. A full description of MEDUSA's state variables, differential equations, functional forms and parameter values is included, with particular attention focused on the submodel describing the export of organic carbon from the surface to the deep ocean. MEDUSA is used here in a multi-decadal hindcast simulation, and its biogeochemical performance evaluated at the global scale.

scholarly journals Medusa-1.0: a new intermediate complexity plankton ecosystem model for the global domain

2011 ◽  
Vol 4 (2) ◽  
pp. 381-417 ◽  
Author(s):  
A. Yool ◽  
E. E. Popova ◽  
T. R. Anderson
Keyword(s):  
Deep Ocean ◽  
Ecosystem Model ◽  
Global Scale ◽  
Ecosystem Dynamics ◽  
Global Ocean ◽  
Full Description ◽  
State Variables ◽  
Intermediate Complexity ◽  
Nutrient Utilisation ◽  
Parameter Values

Abstract. The ongoing, anthropogenically-driven changes to the global ocean are expected to have significant consequences for plankton ecosystems in the future. Because of the role that plankton play in the ocean's "biological pump", changes in abundance, distribution and productivity will likely have additional consequences for the wider carbon cycle. Just as in the terrestrial biosphere, marine ecosystems exhibit marked diversity in species and functional types of organisms. Predicting potential change in plankton ecosystems therefore requires the use of models that are suited to this diversity, but whose parameterisation also permits robust and realistic functional behaviour. In the past decade, advances in model sophistication have attempted to address diversity, but have been criticised for doing so inaccurately or ahead of a requisite understanding of underlying processes. Here we introduce MEDUSA-1.0 (Model of Ecosystem Dynamics, nutrient Utilisation, Sequestration and Acidification), a new "intermediate complexity" plankton ecosystem model that expands on traditional nutrient-phytoplankton-zooplankton-detritus (NPZD) models, and remains amenable to global-scale evaluation. MEDUSA-1.0 includes the biogeochemical cycles of nitrogen, silicon and iron, broadly structured into "small" and "large" plankton size classes, of which the "large" phytoplankton class is representative of a key phytoplankton group, the diatoms. A full description of MEDUSA-1.0's state variables, differential equations, functional forms and parameter values is included, with particular attention focused on the submodel describing the export of organic carbon from the surface to the deep ocean. MEDUSA-1.0 is used here in a multi-decadal hindcast simulation, and its biogeochemical performance evaluated at the global scale.

scholarly journals Application of global models and satellite data for smaller-scale groundwater recharge studies

2016 ◽  
Author(s):  
Rogier Westerhoff ◽  
Paul White ◽  
Zara Rawlinson
Keyword(s):  
New Zealand ◽  
Satellite Data ◽  
Input Data ◽  
Large Scale ◽  
Regional Scale ◽  
Global Scale ◽  
Global Models ◽  
Scale Models ◽  
Boundary Issues ◽  
Rainfall Recharge

Abstract. Large-scale models and satellite data are increasingly used to characterise groundwater and its recharge at the global scale. Although these models have the potential to fill in data gaps and solve trans-boundary issues, they are often neglected in smaller-scale studies, since data are often coarse or uncertain. Large-scale models and satellite data could play a more important role in smaller-scale (i.e., national or regional) studies, if they could be adjusted to fit that scale. In New Zealand, large-scale models and satellite data are not used for groundwater recharge estimation at the national scale, since regional councils (i.e., the water managers) have varying water policy and models are calibrated at the local scale. Also, some regions have many localised ground observations (but poor record coverage), whereas others are data-sparse. Therefore, estimation of recharge is inconsistent at the national scale. This paper presents an approach to apply large-scale, global, models and satellite data to estimate rainfall recharge at the national to regional scale across New Zealand. We present a model, NGRM, that is largely inspired by the global-scale WaterGAP recharge model, but is improved and adjusted using national data. The NGRM model uses MODIS-derived ET and vegetation satellite data, and the available nation-wide datasets on rainfall, elevation, soil and geology. A valuable addition to the recharge estimation is the model uncertainty estimate, based on variance, covariance and sensitivity of all input data components in the model environment. This research shows that, with minor model adjustments and use of improved input data, large-scale models and satellite data can be used to derive rainfall recharge estimates, including their uncertainty, at the smaller scale, i.e., national and regional scale of New Zealand. The estimated New Zealand recharge of the NGRM model compare well to most local and regional lysimeter data and recharge models. The NGRM is therefore assumed to be capable to fill in gaps in data-sparse areas and to create more consistency between datasets from different regions, i.e., to solve trans-boundary issues. This research also shows that smaller-scale recharge studies in New Zealand should include larger boundaries than only a (sub-)aquifer, and preferably the whole catchment. This research points out the need for improved collaboration on the international to national to regional levels to further merge large-scale (global) models to smaller (i.e., national or regional) scales. Future research topics should, collaboratively, focus on: improvement of rainfall-runoff and snowmelt methods; inclusion of river recharge; further improvement of input data (rainfall, evapotranspiration, soil and geology); and the impact of recharge uncertainty in mountainous and irrigated areas.

scholarly journals Impacts of spatial resolution and representation of flow connectivity on large-scale simulation of floods

2017 ◽  
Author(s):  
Cherry May R. Mateo ◽  
Dai Yamazaki ◽  
Hyungjun Kim ◽  
Adisorn Champathong ◽  
Jai Vaze ◽  
...  
Keyword(s):  
Spatial Resolution ◽  
Large Scale ◽  
Flood Hazard ◽  
Regional Scale ◽  
Global Scale ◽  
Test Case ◽  
Efficiency Coefficient ◽  
Computational Power ◽  
Extreme Flood ◽  
Simulation Results

Abstract. Global-scale River Models (GRMs) are core tools for providing consistent estimates of global flood hazard, especially in data-scarce regions. Due to former limitations in computational power and input datasets, most GRMs have been developed to use simplified representation of flow physics and run at coarse spatial resolutions. With increasing computational power and improved datasets, the application of GRMs to finer resolutions is becoming a reality. To support development in this direction, the suitability of GRMs for application to finer resolutions needs to be assessed. This study investigates the impacts of spatial resolution and flow connectivity representation on the predictive capability of a GRM, CaMa-Flood, in simulating the 2011 extreme flood in Thailand. Analyses show that when single downstream connectivity (SDC) is assumed, simulation results deteriorate with finer spatial resolution; Nash–Sutcliffe Efficiency coefficient decreased by more than 35 % between simulation results at 10 km resolution and 1 km resolution. When multiple downstream connectivity (MDC) is represented, simulation results slightly improve with finer spatial resolution. The SDC simulations result in excessive backflows on very flat floodplains due to the restrictive flow directions in finer resolutions. MDC channels attenuated these effects by maintaining flow connectivity and flow capacity between floodplains in varying spatial resolutions. While a regional-scale flood was chosen as a test case, these findings are universal and can be extended to global-scale simulations. These results demonstrate that a GRM can be used for higher resolution simulations of large-scale floods, provided that MDC in rivers and floodplains is adequately represented in the model structure.

scholarly journals Global biogeography of living brachiopods: Bioregionalization patterns and possible controls

PLoS ONE ◽  
2021 ◽  
Vol 16 (11) ◽  
pp. e0259004
Author(s):  
Facheng Ye ◽  
G. R. Shi ◽  
Maria Aleksandra Bitner
Keyword(s):  
Large Scale ◽  
Coastal Upwelling ◽  
Seawater Temperature ◽  
Regional Scale ◽  
Distribution Patterns ◽  
Global Scale ◽  
Biodiversity Hotspots ◽  
Network Analyses ◽  
Ocean Gyres ◽  
Ecological Variable

The global distribution patterns of 14918 geo-referenced occurrences from 394 living brachiopod species were mapped in 5° grid cells, which enabled the visualization and delineation of distinct bioregions and biodiversity hotspots. Further investigation using cluster and network analyses allowed us to propose the first systematically and quantitatively recognized global bioregionalization framework for living brachiopods, consisting of five bioregions and thirteen bioprovinces. No single environmental or ecological variable is accountable for the newly proposed global bioregionalization patterns of living brachiopods. Instead, the combined effects of large-scale ocean gyres, climatic zonation as well as some geohistorical factors (e.g., formation of land bridges and geological recent closure of ancient seaways) are considered as the main drivers at the global scale. At the regional scale, however, the faunal composition, diversity and biogeographical differentiation appear to be mainly controlled by seawater temperature variation, regional ocean currents and coastal upwelling systems.

scholarly journals Large deep-sea zooplankton biomass mirrors primary production in the global ocean

2020 ◽  
Vol 11 (1) ◽  
Author(s):  
S. Hernández-León ◽  
R. Koppelmann ◽  
E. Fraile-Nuez ◽  
A. Bode ◽  
C. Mompeán ◽  
...  
Keyword(s):  
Organic Carbon ◽  
Primary Production ◽  
Deep Sea ◽  
Large Scale ◽  
Net Primary Production ◽  
Deep Ocean ◽  
Zooplankton Biomass ◽  
Global Ocean ◽  
Global Coupling ◽  
Do So

AbstractThe biological pump transports organic carbon produced by photosynthesis to the meso- and bathypelagic zones, the latter removing carbon from exchanging with the atmosphere over centennial time scales. Organisms living in both zones are supported by a passive flux of particles, and carbon transported to the deep-sea through vertical zooplankton migrations. Here we report globally-coherent positive relationships between zooplankton biomass in the epi-, meso-, and bathypelagic layers and average net primary production (NPP). We do so based on a global assessment of available deep-sea zooplankton biomass data and large-scale estimates of average NPP. The relationships obtained imply that increased NPP leads to enhanced transference of organic carbon to the deep ocean. Estimated remineralization from respiration rates by deep-sea zooplankton requires a minimum supply of 0.44 Pg C y−1 transported into the bathypelagic ocean, comparable to the passive carbon sequestration. We suggest that the global coupling between NPP and bathypelagic zooplankton biomass must be also supported by an active transport mechanism associated to vertical zooplankton migration.

scholarly journals Regional-scale lateral carbon transport and CO<sub>2</sub> evasion in temperate stream catchments

2017 ◽  
Vol 14 (21) ◽  
pp. 5003-5014 ◽  
Author(s):  
Katrin Magin ◽  
Celia Somlai-Haase ◽  
Ralf B. Schäfer ◽  
Andreas Lorke
Keyword(s):  
Catchment Area ◽  
Large Scale ◽  
Net Primary Production ◽  
Spatial Scales ◽  
Regional Scale ◽  
Stream Network ◽  
Carbon Export ◽  
Data Set ◽  
Catchment Areas ◽  
Temperate Stream

Abstract. Inland waters play an important role in regional to global-scale carbon cycling by transporting, processing and emitting substantial amounts of carbon, which originate mainly from their catchments. In this study, we analyzed the relationship between terrestrial net primary production (NPP) and the rate at which carbon is exported from the catchments in a temperate stream network. The analysis included more than 200 catchment areas in southwest Germany, ranging in size from 0.8 to 889 km2 for which CO2 evasion from stream surfaces and downstream transport with stream discharge were estimated from water quality monitoring data, while NPP in the catchments was obtained from a global data set based on remote sensing. We found that on average 13.9 g C m−2 yr−1 (corresponding to 2.7 % of terrestrial NPP) are exported from the catchments by streams and rivers, in which both CO2 evasion and downstream transport contributed about equally to this flux. The average carbon fluxes in the catchments of the study area resembled global and large-scale zonal mean values in many respects, including NPP, stream evasion and the carbon export per catchment area in the fluvial network. A review of existing studies on aquatic–terrestrial coupling in the carbon cycle suggests that the carbon export per catchment area varies in a relatively narrow range, despite a broad range of different spatial scales and hydrological characteristics of the study regions.

scholarly journals Presence of <i>Prochlorococcus</i> in the aphotic waters of the western Pacific Ocean

2013 ◽  
Vol 10 (6) ◽  
pp. 9345-9371 ◽  
Author(s):  
N. Jiao ◽  
T. Luo ◽  
R. Zhang ◽  
W. Yan ◽  
Y. Lin ◽  
...  
Keyword(s):  
Pacific Ocean ◽  
Organic Carbon ◽  
Euphotic Zone ◽  
Western Pacific ◽  
Global Ocean ◽  
Western Pacific Ocean ◽  
Carbon Export ◽  
Carbon Pump ◽  
Primary Producer ◽  
The Western Pacific

Abstract. Prochlorococcus, the smallest but most abundant marine primary producer, plays an important role in carbon cycling of the global ocean. As a phototroph, Prochlorococcus is thought to be confined to the euphotic zone, with commonly observed maximum depths of ∼150–200 m. But here we show, using flow cytometry and cellular ribosomal content, for the first time the presence of abundant and active Prochlorococcus in the dark ocean ("deep Prochlorococcus" hereafter). Intensive studies at the Luzon strait in the western Pacific Ocean show that the deep Prochlorococcus populations are exported from the euphotic zone. Multiple physical processes including internal solitary waves could be responsible for the transportation. The unexpected abundance of the tiny phototrophs in the dark ocean reveals a novel mechanism for picoplankton carbon export other than the known mechanisms such as sinking of phytodetritus and aggregates or grazing-mediated transportation. Such direct transportation of picoplanktonic phototrophs from surface to deep waters is poorly understood, but could significantly contribute to both the biological pump (through particulate organic carbon) and the microbial carbon pump (through release of dissolved organic carbon from microbial processes) for carbon sequestration in the ocean.

scholarly journals Clouds, photolysis and regional tropospheric ozone budgets

2009 ◽  
Vol 9 (3) ◽  
pp. 13889-13916 ◽  
Author(s):  
A. Voulgarakis ◽  
O. Wild ◽  
N. H. Savage ◽  
G. D. Carver ◽  
J. A. Pyle
Keyword(s):  
Tropospheric Ozone ◽  
Large Scale ◽  
Transport Model ◽  
Regional Scale ◽  
Three Dimensional ◽  
Global Scale ◽  
Chemical Production ◽  
Chemical Transport Model ◽  
Photolysis Rates ◽  
Boundary Layer Ozone

Abstract. We use a three-dimensional chemical transport model to examine the shortwave radiative effects of clouds on the tropospheric ozone budget. In addition to looking at changes in global concentrations as previous studies have done, we examine changes in ozone chemical production and loss caused by clouds and how these vary in different parts of the troposphere. On a global scale, we find that clouds have a modest effect on ozone chemistry, but on a regional scale their role is much more significant, with the size of the response dependent on the region. The largest averaged changes in chemical budgets (±10–14%) are found in the marine troposphere, where cloud optical depths are high. We demonstrate that cloud effects are small on average in the middle troposphere because this is a transition region between reduction and enhancement in photolysis rates. We show that increases in boundary layer ozone due to clouds are driven by large-scale changes in downward ozone transport from higher in the troposphere rather than by decreases in in-situ ozone chemical loss rates. Increases in upper tropospheric ozone are caused by higher production rates due to backscattering of radiation and consequent increases in photolysis rates, mainly J(NO2). The global radiative effect of clouds on isoprene is stronger than on ozone. Tropospheric isoprene lifetime increases by 7% when taking clouds into account. We compare the importance of clouds in contributing to uncertainties in the global ozone budget with the role of other radiatively-important factors. The budget is most sensitive to the overhead ozone column, while surface albedo and clouds have smaller effects. However, uncertainty in representing the spatial distribution of clouds may lead to a large sensitivity on regional scales.

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