scholarly journals Coping with Pleistocene climatic fluctuations: demographic responses in remote endemic reef fishes

2019 ◽  
Author(s):  
Erwan Delrieu-Trottin ◽  
Nicolas Hubert ◽  
Emily C. Giles ◽  
Pascaline Chifflet-Belle ◽  
Arnaud Suwalski ◽  
...  
Keyword(s):  
Reef Fish ◽  
Endemic Species ◽  
Demographic History ◽  
Fish Fauna ◽  
Reef Fishes ◽  
Milankovitch Cycles ◽  
Ecological Communities ◽  
Rapa Nui ◽  
Climatic Fluctuations ◽  
Demographic Responses

AbstractElucidating demographic history during the settlement of ecological communities is crucial for properly inferring the mechanisms that shape patterns of species diversity and their persistence through time. Here, we used genomic data and coalescent-based approaches to elucidate for the first time the demographic dynamics associated with the settlement by endemic reef fish fauna of one of the most remote peripheral islands of the Pacific Ocean, Rapa Nui (Easter Island). We compared the demographic history of nine endemic species in order to explore their demographic responses to Pleistocene climatic fluctuations. We found that Rapa Nui endemic species share a common demographic history as signatures of population expansions were retrieved for almost all of the species studied here, and synchronous demographic expansions initiated during the last glacial period were recovered for more than half of the studied species. These results suggest that eustatic fluctuations associated with Milankovitch cycles have played a central role in species demographic histories and in the final stage of the community assembly of many Rapa Nui reef fishes. Specifically, sea level low stands resulted in the maximum reef habitat extension for Rapa Nui endemic species; we discuss the potential role of seamounts in allowing endemic species to cope with Pleistocene climatic fluctuations, and we highlight the importance of local historical processes over regional ones. Overall, our results shed light on the mechanisms by which endemism arises and is maintained in peripheral reef fish fauna.

Understanding the origin of the most isolated endemic reef fish fauna of the Indo‐Pacific: Coral reef fishes of Rapa Nui

2019 ◽  
Vol 46 (4) ◽  
pp. 723-733 ◽  
Author(s):  
Erwan Delrieu‐Trottin ◽  
Laura Brosseau‐Acquaviva ◽  
Stefano Mona ◽  
Valentina Neglia ◽  
Emily C. Giles ◽  
...  
Keyword(s):  
Coral Reef ◽  
Reef Fish ◽  
Fish Fauna ◽  
Reef Fishes ◽  
Coral Reef Fishes ◽  
Rapa Nui

scholarly journals Reef fishes of the Anchieta Island State Park, Southwestern Atlantic, Brazil

2018 ◽  
Vol 18 (1) ◽  
Author(s):  
Gabriel Raposo Silva de Souza ◽  
Otto Bismark Fazzano Gadig ◽  
Fabio dos Santos Motta ◽  
Rodrigo Leão de Moura ◽  
Ronaldo Bastos Francini-Filho ◽  
...  
Keyword(s):  
Reef Fish ◽  
Marine Protected Areas ◽  
Fish Fauna ◽  
Reef Fishes ◽  
Southeastern Brazil ◽  
Southwestern Atlantic ◽  
Red Lists ◽  
Island State ◽  
Reef Fish Species ◽  
Regional Red Lists

Abstract This paper presents a checklist of the reef fish fauna of the Anchieta Island State Park, a no-take zone in which no extractive activities are allowed, in Ubatuba, Southeastern Brazil. Data was obtained between 2011 and 2013, mainly through underwater observations with snorkelling and SCUBA, and secondarily using scientific fishing (trawling). Published and unpublished data were also verified and compiled. A total of 103 reef fish species, distributed in 78 genus and 50 families was recorded. Haemulidae was the richest family (n=7 species), followed by Epinephelidae (n=6), Pomacentridae, Carangidae and Tetraodontidae (n= 4 each). Haemulon was also the most speciose genera (n=5), followed by Stegastes, Acanthurus and Mycteroperca (n=3 each). Sixty-nine species (67%) are included in global and regional Red Lists. Twenty-five species (24.2%) are within the categories Critically Endangered (CR), Endangered (EN), Vulnerable (VU) and Near-Threathened (NT). The network of Marine Protected Areas in Southeastern Brazil is still incipient, and the considerable number of threatened species in the Anchieta Island State Park clearly indicates the importance of the study area for the conservation of coastal and reef fishes.

scholarly journals Shore fishes of the Marquesas Islands, an updated checklist with new records and new percentage of endemic species

Check List ◽  
2015 ◽  
Vol 11 (5) ◽  
pp. 1758 ◽  
Author(s):  
Erwan Delrieu-Trottin ◽  
J. T. Williams ◽  
Philippe Bacchet ◽  
Michel Kulbicki ◽  
Johann Mourier ◽  
...  
Keyword(s):  
Coral Reef ◽  
Endemic Species ◽  
New Records ◽  
Fish Fauna ◽  
Reef Fishes ◽  
Easter Island ◽  
Species Level ◽  
Coastal Fish ◽  
Marquesas Islands ◽  
The Third

Expedition Pakaihi I Te Moana was conducted in 2011 to the Marquesas Islands, lying between 07°50ʹ S and 10°35ʹ S latitude and 138°25ʹ W and 140°50ʹ W longitude. The expedition combined extensive col-lections and visual censuses of the shore fish fauna. A total of 74 species are added as new records for the Marquesas Islands; the coastal fish fauna of the Marquesas Islands is increased from 415 to 495 species and the number of endemic species is increased from 48 to 68 species. This increases the per-centage of species-level endemism for the Marquesas Islands to 13.7%, ranking as the third highest region of endemism for coral reef fishes in the Indo-Pacific. Only two other peripheral regions, the Hawai’ian Islands and Easter Island, have higher values.

scholarly journals Two waves of colonization straddling the K–Pg boundary formed the modern reef fish fauna

2014 ◽  
Vol 281 (1783) ◽  
pp. 20140321 ◽  
Author(s):  
S. A. Price ◽  
L. Schmitz ◽  
C. E. Oufiero ◽  
R. I. Eytan ◽  
A. Dornburg ◽  
...  
Keyword(s):  
Reef Fish ◽  
Late Cretaceous ◽  
Evolutionary Dynamics ◽  
Fish Fauna ◽  
Reef Fishes ◽  
Causal Mechanism ◽  
Reef Fish Assemblage ◽  
Ecological Importance ◽  
Modern Reef ◽  
Oceanic Currents

Living reef fishes are one of the most diverse vertebrate assemblages on Earth. Despite its prominence and ecological importance, the origins and assembly of the reef fish fauna is poorly described. A patchy fossil record suggests that the major colonization of reef habitats must have occurred in the Late Cretaceous and early Palaeogene, with the earliest known modern fossil coral reef fish assemblage dated to 50 Ma. Using a phylogenetic approach, we analysed the early evolutionary dynamics of modern reef fishes. We find that reef lineages successively colonized reef habitats throughout the Late Cretaceous and early Palaeogene. Two waves of invasion were accompanied by increasing morphological convergence: one in the Late Cretaceous from 90 to 72 Ma and the other immediately following the end-Cretaceous mass extinction. The surge in reef invasions after the Cretaceous–Palaeogene boundary continued for 10 Myr, after which the pace of transitions to reef habitats slowed. Combined, these patterns match a classic niche-filling scenario: early transitions to reefs were made rapidly by morphologically distinct lineages and were followed by a decrease in the rate of invasions and eventual saturation of morphospace. Major alterations in reef composition, distribution and abundance, along with shifts in climate and oceanic currents, occurred during the Late Cretaceous and early Palaeogene interval. A causal mechanism between these changes and concurrent episodes of reef invasion remains obscure, but what is clear is that the broad framework of the modern reef fish fauna was in place within 10 Myr of the end-Cretaceous extinction.

scholarly journals Coping with Pleistocene climatic fluctuations: Demographic responses in remote endemic reef fishes

2020 ◽  
Vol 29 (12) ◽  
pp. 2218-2233 ◽  
Author(s):  
Erwan Delrieu‐Trottin ◽  
Nicolas Hubert ◽  
Emily C. Giles ◽  
Pascaline Chifflet‐Belle ◽  
Arnaud Suwalski ◽  
...  
Keyword(s):  
Reef Fishes ◽  
Climatic Fluctuations ◽  
Demographic Responses

scholarly journals Status of DNA Barcoding Coverage for the Tropical Western Atlantic Shorefishes and Reef Fishes

DNA Barcodes ◽  
2015 ◽  
Vol 3 (1) ◽  
Author(s):  
Benjamin C. Victor ◽  
Martha Valdez-Moreno ◽  
Lourdes Vásquez-Yeomans
Keyword(s):  
Reef Fish ◽  
Fish Fauna ◽  
Reef Fishes ◽  
Cryptic Diversity ◽  
Species List ◽  
Public And Private ◽  
Western Atlantic ◽  
The Public ◽  
Species Lists ◽  
Reef Fish Species

AbstractBackground: Barcode coverage is difficult to assess for large regions due to incomplete species lists, inaccurate identifications, and cryptic diversity. However, as coverage approaches completion, it becomes possible to critically evaluate identifications and validate barcode lineages. We collate the results of the FISH-BOL barcode project and assess coverage for each family of bony shorefishes and reef fishes from the tropical western Atlantic Ocean. Methodology: We identify to species the public and private barcode lineages from the region on BOLD, confirming identifications by vouchers, phylogeographic deduction, and the process of elimination. The lineages and BINs are assigned to species from a comprehensive species list for the region. Results: We estimate 1029 of 1311 total bony shorefish species in the region are barcoded (78.5%). For reef-associated fishes, 902 of 1083 species are barcoded (83.3%). About 70 of the 181 species not yet barcoded are endemic species from Florida/ Gulf of Mexico or Venezuela, leaving about 90% of the central Caribbean reef fish species barcoded to date. Most species are represented by one barcode lineage, but among the gobioids and blennioids there are many more lineages (BINs) than species, indicating substantial cryptic diversity. Conclusions: As barcode coverage for a region approaches completion, a robust assessment of coverage can be made. The reef fish fauna of the tropical western Atlantic now has the highest coverage for a large marine area, from about 80 to 90% depending on definitions and geographic limits.

Spatial assemblage structure of shallow-water reef fish in Southwest Australia

2020 ◽  
Vol 649 ◽  
pp. 125-140
Author(s):  
DS Goldsworthy ◽  
BJ Saunders ◽  
JRC Parker ◽  
ES Harvey
Keyword(s):  
Shallow Water ◽  
Reef Fish ◽  
Marine Environment ◽  
Fish Assemblages ◽  
Canopy Cover ◽  
Reef Fishes ◽  
Reef Fish Assemblage ◽  
Reef Type ◽  
Present Distribution ◽  
Southwest Australia

Bioregional categorisation of the Australian marine environment is essential to conserve and manage entire ecosystems, including the biota and associated habitats. It is important that these regions are optimally positioned to effectively plan for the protection of distinct assemblages. Recent climatic variation and changes to the marine environment in Southwest Australia (SWA) have resulted in shifts in species ranges and changes to the composition of marine assemblages. The goal of this study was to determine if the current bioregionalisation of SWA accurately represents the present distribution of shallow-water reef fishes across 2000 km of its subtropical and temperate coastline. Data was collected in 2015 using diver-operated underwater stereo-video surveys from 7 regions between Port Gregory (north of Geraldton) to the east of Esperance. This study indicated that (1) the shallow-water reef fish of SWA formed 4 distinct assemblages along the coast: one Midwestern, one Central and 2 Southern Assemblages; (2) differences between these fish assemblages were primarily driven by sea surface temperature, Ecklonia radiata cover, non-E. radiata (canopy) cover, understorey algae cover, reef type and reef height; and (3) each of the 4 assemblages were characterised by a high number of short-range Australian and Western Australian endemic species. The findings from this study suggest that 4, rather than the existing 3 bioregions would more effectively capture the shallow-water reef fish assemblage patterns, with boundaries having shifted southwards likely associated with ocean warming.

Community changes of coral reef fishes in Bunaken National Park, North Sulawesi, Indonesia

2013 ◽  
Vol 1 (2) ◽  
pp. 117
Author(s):  
Fakhrizal Setiawan ◽  
Janny D Kusen ◽  
Georis JF Kaligis
Keyword(s):  
Reef Fish ◽  
National Park ◽  
Fish Community ◽  
Time Series Data ◽  
Coral Cover ◽  
Fish Communities ◽  
Reef Fishes ◽  
Series Data ◽  
Fish Community Structure ◽  
Reef Fish Community

In order to look at changes in coral and reef fish communities during the period of 2006 to 2013, this research was carried out at Bunaken National Park (BNP) with 26 observation sites. The existing data and information of reef fish communities in the park generally could not be used as representative for describing the whole region. Percentage of coral cover and fish abundance during the study period shows that Bunaken Island is more similar to other locations. Reef fish community structure as seen from ecological index (H' at all sites being categorized, E category labile and low category C) shows the condition of the reef fish community is still good. Changes in the structure of reef fish communities showed declining conditions compared to 2006, and coral cover continued to decrease compared to 1998 and 2007. Good overall reef fish and coral cover have decreased; it is thought to be related to the pressure in BNP. Some of the pressures in the region were (i) increasing numbers of domestic as well as foreign visitors, (ii) increasing number of residents in the region, as well as the burden of waste and trash from the Bay of Manado. Penelitian dilakukan di Taman Nasional Bunaken (Utara dan Selatan)   pada 26 lokasi  pengamatan untuk menganalisis perubahan struktur komunitas ikan karang melalui kajian dari suatu time series data dari beberapa penelitian sebelumnya. Data primer mengenai ikan-ikan karang diperoleh melalui visual sensus bawah air yang bersamaan dengan observasi terumbu karang menggunakan point intercept transect. Nilai persentase tutupan karang dan kelimpahan ikan menunjukkan bahwa pada lokasi pengamatan Pulau Bunaken paling baik dibandingan lokasi lainnya. Struktur komunitas ikan karang yang dianalisis dengan indeks ekologi menunjukkan indeks keanekaragaman (H’) di semua site masuk kategori sedang, indeks kesamaan (E) kategori labil dan indeks Dominansi (C) kategori rendah. Hasil penelitian ini menunjukkan bahwa kondisi komunitas ikan karang masih baik, sekalipun  perubahan struktur komunitas ikan karang menunjukkan kondisi yang menurun dibandingkan tahun 2006, begitu juga tutupan karang yang terus turun dibandingkan tahun 1998 dan 2007. Secara keseluruhan baik ikan karang maupun tutupan karang mengalami penurunan, hal ini diduga terkait dengan tekanan yang dialami kawasan TN. Bunaken. Salah satu tekanan terhadap kawasan adalah jumlah turis dari dalam maupun luar negeri yang semakin meningkat tiap tahunnya, penambahan jumlah penduduk di dalam kawasan, serta beban limbah dan sampah dari Teluk Manado.

scholarly journals Cytotype distribution and chloroplast phylogeography of the Actinidia chinensis complex

2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Zhi Wang ◽  
Caihong Zhong ◽  
Dawei Li ◽  
Chunlin Yan ◽  
Xiaohong Yao ◽  
...  
Keyword(s):  
Environmental Changes ◽  
Demographic History ◽  
Wide Distribution ◽  
Historical Demography ◽  
Actinidia Chinensis ◽  
Ecological Niche Models ◽  
Subtropical China ◽  
Modeling Tools ◽  
Climatic Fluctuations ◽  
Ploidy Levels

Abstract Background Plant phylogeographic studies of species in subtropical China have mainly focused on rare and endangered species, whereas few studies have been conducted on taxa with relatively wide distribution, especially polyploid species. We investigated the cytotype and haplotype distribution pattern of the Actinidia chinensis complex, a widespread geographically woody liana with variable ploidy in subtropical China comprising two varieties, with three chloroplast fragments DNA (ndhF-rpl132, rps16-trnQ and trnE-trnT). Macroevolutionary, microevolutionary and niche modeling tools were also combined to disentangle the origin and the demographic history of the species or cytotypes. Results The ploidy levels of 3338 individuals from 128 populations sampled throughout the species distribution range were estimated with flow cytometry. The widespread cytotypes were diploids followed by tetraploids and hexaploids, whereas triploids and octoploids occurred in a few populations. Thirty-one chloroplast haplotypes were detected. The genetic diversity and genetic structure were found to be high between varieties (or ploidy races) chinensis and deliciosa. Our results revealed that these two varieties inhabit significantly different climatic niche spaces. Ecological niche models (ENMs) indicate that all varieties’ ranges contracted during the Last Inter Glacial (LIG), and expanded eastward or northward during the Last Glacial Maximum (LGM). Conclusions Pliocene and Plio-Pleistocene climatic fluctuations and vicariance appear to have played key roles in shaping current population structure and historical demography in the A. chinensis complex. The polyploidization process also appears to have played an important role in the historical demography of the complex through improving their adaptability to environmental changes.

scholarly journals Coral settlement and recruitment responses to reef fish foraging and trait diversity

2021 ◽  
Author(s):  
Cher F Y Chow ◽  
Caitlin Bolton ◽  
Nader Boutros ◽  
Viviana Brambilla ◽  
Luisa Fontoura ◽  
...  
Keyword(s):  
Reef Fish ◽  
Fish Assemblages ◽  
Reef Fishes ◽  
Foraging Strategies ◽  
Coral Recruitment ◽  
Coral Settlement ◽  
Trait Divergence ◽  
Positive Effects ◽  
Recruitment Success ◽  
Trait Diversity

The process of coral recruitment is crucial to the healthy functioning of coral reef ecosystems, as well as recovery following disturbances. Fishes are key modulators of this process by feeding on algae and other benthic taxa that compete with corals for benthic space. However, foraging strategies within reef fish assemblages are highly diverse and the effect of foraging diversity on coral recruitment success remains poorly understood. Here, we test how the foraging traits of reef fishes affect coral settlement and juvenile success at Lizard Island, Great Barrier Reef. Using a multi-model inference approach incorporating six metrics of fish assemblage foraging diversity (foraging rates, trait richness, trait evenness, trait divergence, herbivore abundance, and benthic invertivore abundance), we found that herbivore abundance had positive effects on both coral settlement and recruitment success. However, foraging trait diversity had a negative effect on coral settlement but not on recruitment. Coral settlement was higher at sites with less trait diverse fish assemblages, specifically in trait divergence and richness. Moreover, these two trait diversity metrics were stronger predictors of coral settlement success compared to herbivore abundance. Our findings provide evidence that impacts mediated by fish foraging on coral juveniles can potentially be harmful during settlement, but the space-clearing effect overall remains advantageous. We show here that the variation of fish biodiversity across reefs can be a partial driver to spatially uneven patterns of coral recruitment and reef recovery.

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