scholarly journals Graph-Based Method for Anomaly Detection in Functional Brain Network using Variational Autoencoder

2019 ◽  
Author(s):  
Jalal Mirakhorli ◽  
Mojgan Mirakhorli
Keyword(s):  
Large Scale ◽  
Functional Neuroimaging ◽  
Evaluation Criteria ◽  
Region Of Interest ◽  
Brain Network ◽  
Convolutional Network ◽  
Large Scale Data ◽  
Functional Brain Network ◽  
Variational Autoencoder ◽  
Brain Connections

AbstractFunctional neuroimaging techniques using resting-state functional MRI (rs-fMRI) have accelerated progress in brain disorders and dysfunction studies. Since, there are the slight differences between healthy and disorder brains, investigation in the complex topology of human brain functional networks is difficult and complicated task with the growth of evaluation criteria. Recently, graph theory and deep learning applications have spread widely to understanding human cognitive functions that are linked to gene expression and related distributed spatial patterns. Irregular graph analysis has been widely applied in many brain recognition domains, these applications might involve both node-centric and graph-centric tasks. In this paper, we discuss about individual Variational Autoencoder and Graph Convolutional Network (GCN) for the region of interest identification areas of brain which do not have normal connection when apply certain tasks. Here, we identified a framework of Graph Auto-Encoder (GAE) with hyper sphere distributer for functional data analysis in brain imaging studies that is underlying non-Euclidean structure, in learning of strong rigid graphs among large scale data. In addition, we distinguish the possible mode correlations in abnormal brain connections.

scholarly journals NPU RGB+D Dataset and a Feature-Enhanced LSTM-DGCN Method for Action Recognition of Basketball Players

2021 ◽  
Vol 11 (10) ◽  
pp. 4426
Author(s):  
Chunyan Ma ◽  
Ji Fan ◽  
Jinghao Yao ◽  
Tao Zhang
Keyword(s):  
Action Recognition ◽  
Large Scale ◽  
Short Term Memory ◽  
Evaluation Criteria ◽  
Image Data ◽  
Basketball Player ◽  
Basketball Players ◽  
Convolutional Network ◽  
Atomic Actions ◽  
New Feature

Computer vision-based action recognition of basketball players in basketball training and competition has gradually become a research hotspot. However, owing to the complex technical action, diverse background, and limb occlusion, it remains a challenging task without effective solutions or public dataset benchmarks. In this study, we defined 32 kinds of atomic actions covering most of the complex actions for basketball players and built the dataset NPU RGB+D (a large scale dataset of basketball action recognition with RGB image data and Depth data captured in Northwestern Polytechnical University) for 12 kinds of actions of 10 professional basketball players with 2169 RGB+D videos and 75 thousand frames, including RGB frame sequences, depth maps, and skeleton coordinates. Through extracting the spatial features of the distances and angles between the joint points of basketball players, we created a new feature-enhanced skeleton-based method called LSTM-DGCN for basketball player action recognition based on the deep graph convolutional network (DGCN) and long short-term memory (LSTM) methods. Many advanced action recognition methods were evaluated on our dataset and compared with our proposed method. The experimental results show that the NPU RGB+D dataset is very competitive with the current action recognition algorithms and that our LSTM-DGCN outperforms the state-of-the-art action recognition methods in various evaluation criteria on our dataset. Our action classifications and this NPU RGB+D dataset are valuable for basketball player action recognition techniques. The feature-enhanced LSTM-DGCN has a more accurate action recognition effect, which improves the motion expression ability of the skeleton data.

A new method to predict anomaly in brain network based on graph deep learning

2020 ◽  
Vol 31 (6) ◽  
pp. 681-689
Author(s):  
Jalal Mirakhorli ◽  
Hamidreza Amindavar ◽  
Mojgan Mirakhorli
Keyword(s):  
Deep Learning ◽  
Large Scale ◽  
Brain Plasticity ◽  
Brain Network ◽  
High Order ◽  
Brain Diseases ◽  
Simultaneous Occurrence ◽  
Generative Adversarial Network ◽  
The Brain ◽  
Brain Connections

AbstractFunctional magnetic resonance imaging a neuroimaging technique which is used in brain disorders and dysfunction studies, has been improved in recent years by mapping the topology of the brain connections, named connectopic mapping. Based on the fact that healthy and unhealthy brain regions and functions differ slightly, studying the complex topology of the functional and structural networks in the human brain is too complicated considering the growth of evaluation measures. One of the applications of irregular graph deep learning is to analyze the human cognitive functions related to the gene expression and related distributed spatial patterns. Since a variety of brain solutions can be dynamically held in the neuronal networks of the brain with different activity patterns and functional connectivity, both node-centric and graph-centric tasks are involved in this application. In this study, we used an individual generative model and high order graph analysis for the region of interest recognition areas of the brain with abnormal connection during performing certain tasks and resting-state or decompose irregular observations. Accordingly, a high order framework of Variational Graph Autoencoder with a Gaussian distributer was proposed in the paper to analyze the functional data in brain imaging studies in which Generative Adversarial Network is employed for optimizing the latent space in the process of learning strong non-rigid graphs among large scale data. Furthermore, the possible modes of correlations were distinguished in abnormal brain connections. Our goal was to find the degree of correlation between the affected regions and their simultaneous occurrence over time. We can take advantage of this to diagnose brain diseases or show the ability of the nervous system to modify brain topology at all angles and brain plasticity according to input stimuli. In this study, we particularly focused on Alzheimer’s disease.

scholarly journals Large-Scale Functional Brain Network Architecture Changes Associated With Trauma-Related Dissociation

2020 ◽  
pp. appi.ajp.2020.1
Author(s):  
Lauren A.M. Lebois ◽  
Meiling Li ◽  
Justin T. Baker ◽  
Jonathan D. Wolff ◽  
Danhong Wang ◽  
...  
Keyword(s):  
Network Architecture ◽  
Large Scale ◽  
Brain Network ◽  
Functional Brain ◽  
Functional Brain Network

Dynamic Reorganization of the Cortical Functional Brain Network in Affective Processing and Cognitive Reappraisal

2020 ◽  
Vol 30 (10) ◽  
pp. 2050051
Author(s):  
Feng Fang ◽  
Thomas Potter ◽  
Thinh Nguyen ◽  
Yingchun Zhang
Keyword(s):  
Emotion Regulation ◽  
Large Scale ◽  
Brain Networks ◽  
Cognitive Reappraisal ◽  
Brain Network ◽  
Affective Processing ◽  
Functional Brain ◽  
Affective Stimuli ◽  
Functional Brain Network ◽  
Functional Brain Networks

Emotion and affect play crucial roles in human life that can be disrupted by diseases. Functional brain networks need to dynamically reorganize within short time periods in order to efficiently process and respond to affective stimuli. Documenting these large-scale spatiotemporal dynamics on the same timescale they arise, however, presents a large technical challenge. In this study, the dynamic reorganization of the cortical functional brain network during an affective processing and emotion regulation task is documented using an advanced multi-model electroencephalography (EEG) and functional magnetic resonance imaging (fMRI) technique. Sliding time window correlation and [Formula: see text]-means clustering are employed to explore the functional brain connectivity (FC) dynamics during the unaltered perception of neutral (moderate valence, low arousal) and negative (low valence, high arousal) stimuli and cognitive reappraisal of negative stimuli. Betweenness centralities are computed to identify central hubs within each complex network. Results from 20 healthy subjects indicate that the cortical mechanism for cognitive reappraisal follows a ‘top-down’ pattern that occurs across four brain network states that arise at different time instants (0–170[Formula: see text]ms, 170–370[Formula: see text]ms, 380–620[Formula: see text]ms, and 620–1000[Formula: see text]ms). Specifically, the dorsolateral prefrontal cortex (DLPFC) is identified as a central hub to promote the connectivity structures of various affective states and consequent regulatory efforts. This finding advances our current understanding of the cortical response networks of reappraisal-based emotion regulation by documenting the recruitment process of four functional brain sub-networks, each seemingly associated with different cognitive processes, and reveals the dynamic reorganization of functional brain networks during emotion regulation.

scholarly journals Development of a Large-Scale Functional Brain Network during Human Non-Rapid Eye Movement Sleep

2010 ◽  
Vol 30 (34) ◽  
pp. 11379-11387 ◽  
Author(s):  
V. I. Spoormaker ◽  
M. S. Schroter ◽  
P. M. Gleiser ◽  
K. C. Andrade ◽  
M. Dresler ◽  
...  
Keyword(s):  
Eye Movement ◽  
Large Scale ◽  
Brain Network ◽  
Rapid Eye Movement ◽  
Rapid Eye Movement Sleep ◽  
Functional Brain ◽  
Functional Brain Network

scholarly journals Functional brain network reconfiguration during learning in a dynamic environment

2019 ◽  
Author(s):  
Chang-Hao Kao ◽  
Ankit N. Khambhati ◽  
Danielle S. Bassett ◽  
Matthew R. Nassar ◽  
Joseph T. McGuire ◽  
...  
Keyword(s):  
Functional Connectivity ◽  
Large Scale ◽  
Functional Integration ◽  
Dynamic Environment ◽  
Brain Network ◽  
Uncertain Environments ◽  
Whole Brain ◽  
Functional Brain Network ◽  
Brain Pattern ◽  
Brain Functional Connectivity

AbstractWhen learning about dynamic and uncertain environments, people should update their beliefs most strongly when new evidence is most informative, such as when the environment undergoes a surprising change or existing beliefs are highly uncertain. Here we show that modulations of surprise and uncertainty are encoded in a particular, temporally dynamic pattern of whole-brain functional connectivity, and this encoding is enhanced in individuals that adapt their learning dynamics more appropriately in response to these factors. The key feature of this whole-brain pattern of functional connectivity is stronger connectivity, or functional integration, between the fronto-parietal and other functional systems. Our results provide new insights regarding the association between dynamic adjustments in learning and dynamic, large-scale changes in functional connectivity across the brain.

scholarly journals Adolescent development of multiscale cortical wiring and functional connectivity in the human connectome

2021 ◽  
Author(s):  
Bo-yong Park ◽  
Casey Paquola ◽  
Richard A.I. Bethlehem ◽  
Oualid Benkarim ◽  
Bratislav Misic ◽  
...  
Keyword(s):  
Functional Connectivity ◽  
Large Scale ◽  
Brain Network ◽  
Network Development ◽  
Network Function ◽  
Age Related ◽  
Mri Features ◽  
Functional Brain Network ◽  
Structural Networks ◽  
Advanced Model

Adolescence is a time of profound changes in the structural wiring of the brain and maturation of large-scale functional interactions. Here, we analyzed structural and functional brain network development in an accelerated longitudinal cohort spanning 14-25 years (n = 199). Core to our work was an advanced model of cortical wiring that incorporates multimodal MRI features of (i) cortico-cortical proximity, (ii) microstructural similarity, and (iii) diffusion tractography. Longitudinal analyses assessing age-related changes in cortical wiring during adolescence identified increases in cortical wiring within attention and default-mode networks, as well as between transmodal and attention, and sensory and limbic networks, indicative of a continued differentiation of cortico-cortical structural networks. Cortical wiring changes were statistically independent from age-related cortical thinning seen in the same subjects. Conversely, resting-state functional MRI analysis in the same subjects indicated an increasing segregation of sensory and transmodal systems during adolescence, with age-related reductions in their functional connectivity alongside with an increase in structural wiring distance. Our findings provide new insights into adolescent brain network development, illustrating how the maturation of structural wiring interacts with the development of macroscale network function.

scholarly journals Age-related changes in spatial and temporal features of resting state fMRI

2017 ◽  
Author(s):  
Shruti G. Vij ◽  
Jason S. Nomi ◽  
Dina R. Dajani ◽  
Lucina Q. Uddin
Keyword(s):  
Resting State ◽  
Large Scale ◽  
Spectral Composition ◽  
Brain Network ◽  
Functional Networks ◽  
Functional Changes ◽  
Age Related ◽  
Temporal Features ◽  
Functional Brain Network ◽  
Age Related Changes

AbstractDevelopment and aging are associated with functional changes in the brain across the lifespan. These changes can be detected in spatial and temporal features of resting state functional MRI (rs-fMRI) data. Independent vector analysis (IVA) is a whole-brain multivariate approach that can be used to comprehensively assess these changes in spatial and temporal features. We present a multi-dimensional approach to assessing age-related changes in spatial and temporal features of statistically independent components identified by IVA in a cross-sectional lifespan sample (ages 6-85 years). We show that while large-scale brain network configurations remain consistent throughout the lifespan, changes continue to occur in both local organization and in the spectral composition of these functional networks. We show that the spatial extent of functional networks decreases with age, but with no significant change in the peak functional loci of these networks. Additionally, we show differential age-related patterns across the frequency spectrum; lower frequency correlations decrease across the lifespan whereas higher-frequency correlations increase. These changes indicate an increasing stability of networks with age. In addition to replicating results from previous studies, the current results uncover new aspects of functional brain network changes across the lifespan that are frequency band-dependent.

scholarly journals Long-term prognosis and educational determinants of brain network decline in older adult individuals

Nature Aging ◽  
2021 ◽  
Author(s):  
Micaela Y. Chan ◽  
Liang Han ◽  
Claudia A. Carreno ◽  
Ziwei Zhang ◽  
Rebekah M. Rodriguez ◽  
...  
Keyword(s):  
Older Adults ◽  
Large Scale ◽  
Brain Network ◽  
Network Organization ◽  
College Degree ◽  
Functional Brain Network ◽  
Brain Structure And Function ◽  
Longitudinal Imaging ◽  
Long Term Prognosis ◽  
And Function

AbstractOlder adults with lower education are at greater risk for dementia. It is unclear which brain changes lead to these outcomes. Longitudinal imaging-based measures of brain structure and function were examined in adult individuals (baseline age, 45–86 years; two to five visits per participant over 1–9 years). College degree completion differentiates individual-based and neighborhood-based measures of socioeconomic status and disadvantage. Older adults (~65 years and over) without a college degree exhibit a pattern of declining large-scale functional brain network organization (resting-state system segregation) that is less evident in their college-educated peers. Declining brain system segregation predicts impending changes in dementia severity, measured up to 10 years past the last scan date. The prognostic value of brain network change is independent of Alzheimer’s disease (AD)-related genetic risk (APOE status), the presence of AD-associated pathology (cerebrospinal fluid phosphorylated tau, cortical amyloid) and cortical thinning. These results demonstrate that the trajectory of an individual’s brain network organization varies in relation to their educational attainment and, more broadly, is a unique indicator of individual brain health during older age.

scholarly journals Quantitative Identification of Functional Connectivity Disturbances in Neuropsychiatric Lupus Based on Resting-State fMRI: A Robust Machine Learning Approach

2020 ◽  
Vol 10 (11) ◽  
pp. 777
Author(s):  
Nicholas John Simos ◽  
Stavros I. Dimitriadis ◽  
Eleftherios Kavroulakis ◽  
Georgios C. Manikis ◽  
George Bertsias ◽  
...  
Keyword(s):  
Machine Learning ◽  
Functional Connectivity ◽  
Lupus Erythematosus ◽  
Statistical Power ◽  
Functional Neuroimaging ◽  
Brain Regions ◽  
Brain Network ◽  
Functional Brain ◽  
Graph Metrics ◽  
Functional Brain Network

Neuropsychiatric systemic lupus erythematosus (NPSLE) is an autoimmune entity comprised of heterogenous syndromes affecting both the peripheral and central nervous system. Research on the pathophysiological substrate of NPSLE manifestations, including functional neuroimaging studies, is extremely limited. The present study examined person-specific patterns of whole-brain functional connectivity in NPSLE patients (n = 44) and age-matched healthy control participants (n = 39). Static functional connectivity graphs were calculated comprised of connection strengths between 90 brain regions. These connections were subsequently filtered through rigorous surrogate analysis, a technique borrowed from physics, novel to neuroimaging. Next, global as well as nodal network metrics were estimated for each individual functional brain network and were input to a robust machine learning algorithm consisting of a random forest feature selection and nested cross-validation strategy. The proposed pipeline is data-driven in its entirety, and several tests were performed in order to ensure model robustness. The best-fitting model utilizing nodal graph metrics for 11 brain regions was associated with 73.5% accuracy (74.5% sensitivity and 73% specificity) in discriminating NPSLE from healthy individuals with adequate statistical power. Closer inspection of graph metric values suggested an increased role within the functional brain network in NSPLE (indicated by higher nodal degree, local efficiency, betweenness centrality, or eigenvalue efficiency) as compared to healthy controls for seven brain regions and a reduced role for four areas. These findings corroborate earlier work regarding hemodynamic disturbances in these brain regions in NPSLE. The validity of the results is further supported by significant associations of certain selected graph metrics with accumulated organ damage incurred by lupus, with visuomotor performance and mental flexibility scores obtained independently from NPSLE patients.

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