scholarly journals A systematic evaluation of interneuron morphology representations for cell type discrimination

2019 ◽  
Author(s):  
Sophie Laturnus ◽  
Dmitry Kobak ◽  
Philipp Berens
Keyword(s):  
Cell Types ◽  
Bipolar Cells ◽  
Machine Learning Algorithms ◽  
Feature Representation ◽  
Inhibitory Neurons ◽  
Systematic Evaluation ◽  
Data Sets ◽  
Feature Representations ◽  
Density Maps ◽  
The Difference

AbstractQuantitative analysis of neuronal morphologies usually begins with choosing a particular feature representation in order to make individual morphologies amenable to standard statistics tools and machine learning algorithms. Many different feature representations have been suggested in the literature, ranging from density maps to intersection profiles, but they have never been compared side by side. Here we performed a systematic comparison of various representations, measuring how well they were able to capture the difference between known morphological cell types. For our benchmarking effort, we used several curated data sets consisting of mouse retinal bipolar cells and cortical inhibitory neurons. We found that the best performing feature representations were two-dimensional density maps closely followed by morphometric statistics, which both continued to perform well even when neurons were only partially traced. The same representations performed well in an unsupervised setting, implying that they can be suitable for dimensionality reduction or clustering.

scholarly journals A Systematic Evaluation of Interneuron Morphology Representations for Cell Type Discrimination

2020 ◽  
Vol 18 (4) ◽  
pp. 591-609 ◽  
Author(s):  
Sophie Laturnus ◽  
Dmitry Kobak ◽  
Philipp Berens
Keyword(s):  
Cell Types ◽  
Bipolar Cells ◽  
Machine Learning Algorithms ◽  
Feature Representation ◽  
Inhibitory Neurons ◽  
Systematic Evaluation ◽  
Two Dimensional ◽  
Feature Representations ◽  
Density Maps ◽  
The Difference

Abstract Quantitative analysis of neuronal morphologies usually begins with choosing a particular feature representation in order to make individual morphologies amenable to standard statistics tools and machine learning algorithms. Many different feature representations have been suggested in the literature, ranging from density maps to intersection profiles, but they have never been compared side by side. Here we performed a systematic comparison of various representations, measuring how well they were able to capture the difference between known morphological cell types. For our benchmarking effort, we used several curated data sets consisting of mouse retinal bipolar cells and cortical inhibitory neurons. We found that the best performing feature representations were two-dimensional density maps, two-dimensional persistence images and morphometric statistics, which continued to perform well even when neurons were only partially traced. Combining these feature representations together led to further performance increases suggesting that they captured non-redundant information. The same representations performed well in an unsupervised setting, implying that they can be suitable for dimensionality reduction or clustering.

scholarly journals Ensemble Learning-Based Person Re-identification with Multiple Feature Representations

Complexity ◽  
2018 ◽  
Vol 2018 ◽  
pp. 1-12 ◽  
Author(s):  
Yun Yang ◽  
Xiaofang Liu ◽  
Qiongwei Ye ◽  
Dapeng Tao
Keyword(s):  
Feature Representation ◽  
Distance Metric ◽  
Matching Model ◽  
Feature Representations ◽  
Training Samples ◽  
Multiple Feature ◽  
Benchmark Datasets ◽  
Composite Representation ◽  
The Difference ◽  
Matching Models

As an important application in video surveillance, person reidentification enables automatic tracking of a pedestrian through different disjointed camera views. It essentially focuses on extracting or learning feature representations followed by a matching model using a distance metric. In fact, person reidentification is a difficult task because, first, no universal feature representation can perfectly identify the amount of pedestrians in the gallery obtained by a multicamera system. Although different features can be fused into a composite representation, the fusion still does not fully explore the difference, complementarity, and importance between different features. Second, a matching model always has a limited amount of training samples to learn a distance metric for matching probe images against a gallery, which certainly results in an unstable learning process and poor matching result. In this paper, we address the issues of person reidentification by the ensemble theory, which explores the importance of different feature representations, and reconcile several matching models on different feature representations to an optimal one via our proposed weighting scheme. We have carried out the simulation on two well-recognized person reidentification benchmark datasets: VIPeR and ETHZ. The experimental results demonstrate that our approach achieves state-of-the-art performance.

scholarly journals Communication in Human-Robot Interaction

2020 ◽  
Vol 1 (4) ◽  
pp. 279-285
Author(s):  
Andrea Bonarini
Keyword(s):  
Machine Learning ◽  
Human Computer Interaction ◽  
Recent Literature ◽  
Learning Algorithms ◽  
Human Robot Interaction ◽  
Machine Learning Algorithms ◽  
Data Sets ◽  
Robot Interaction ◽  
The Difference ◽  
Real Market

Abstract Purpose of Review To present the multi-faceted aspects of communication between robot and humans (HRI), putting in evidence that it is not limited to language-based interaction, but it includes all aspects that are relevant in communication among physical beings, exploiting all the available sensor channels. Recent Findings For specific purposes, machine learning algorithms could be exploited when data sets and appropriate algorithms are available. Summary Together with linguistic aspects, physical aspects play an important role in HRI and make the difference with respect to the more limited human-computer interaction (HCI). A review of the recent literature about the exploitation of different interaction channels is presented. The interpretation of signals and the production of appropriate communication actions require to consider psychological, sociological, and practical aspects, which may affect the performance. Communication is just one of the functionalities of an interactive robot and, as all the others, will need to be benchmarked to support the possibility for social robots to reach a real market.

Advances in the Prediction of Protein Subcellular Locations with Machine Learning

2019 ◽  
Vol 14 (5) ◽  
pp. 406-421 ◽  
Author(s):  
Ting-He Zhang ◽  
Shao-Wu Zhang
Keyword(s):  
Machine Learning ◽  
Feature Fusion ◽  
Protein Sequences ◽  
Subcellular Location ◽  
Automated Analysis ◽  
Cellular Level ◽  
Machine Learning Algorithms ◽  
Feature Representation ◽  
Protein Subcellular Location ◽  
Protein Subcellular Locations

Background: Revealing the subcellular location of a newly discovered protein can bring insight into their function and guide research at the cellular level. The experimental methods currently used to identify the protein subcellular locations are both time-consuming and expensive. Thus, it is highly desired to develop computational methods for efficiently and effectively identifying the protein subcellular locations. Especially, the rapidly increasing number of protein sequences entering the genome databases has called for the development of automated analysis methods. Methods: In this review, we will describe the recent advances in predicting the protein subcellular locations with machine learning from the following aspects: i) Protein subcellular location benchmark dataset construction, ii) Protein feature representation and feature descriptors, iii) Common machine learning algorithms, iv) Cross-validation test methods and assessment metrics, v) Web servers. Result & Conclusion: Concomitant with a large number of protein sequences generated by highthroughput technologies, four future directions for predicting protein subcellular locations with machine learning should be paid attention. One direction is the selection of novel and effective features (e.g., statistics, physical-chemical, evolutional) from the sequences and structures of proteins. Another is the feature fusion strategy. The third is the design of a powerful predictor and the fourth one is the protein multiple location sites prediction.

scholarly journals Using Machine Learning Methods to Identify Particle Types from Doppler Lidar Measurements in Iceland

2021 ◽  
Vol 13 (13) ◽  
pp. 2433
Author(s):  
Shu Yang ◽  
Fengchao Peng ◽  
Sibylle von Löwis ◽  
Guðrún Nína Petersen ◽  
David Christian Finger
Keyword(s):  
Machine Learning ◽  
Weather Conditions ◽  
Dust Storms ◽  
Machine Learning Algorithms ◽  
Lidar Data ◽  
Data Sets ◽  
Doppler Lidar ◽  
Lidar Measurements ◽  
Using Data ◽  
Filter Noise

Doppler lidars are used worldwide for wind monitoring and recently also for the detection of aerosols. Automatic algorithms that classify the lidar signals retrieved from lidar measurements are very useful for the users. In this study, we explore the value of machine learning to classify backscattered signals from Doppler lidars using data from Iceland. We combined supervised and unsupervised machine learning algorithms with conventional lidar data processing methods and trained two models to filter noise signals and classify Doppler lidar observations into different classes, including clouds, aerosols and rain. The results reveal a high accuracy for noise identification and aerosols and clouds classification. However, precipitation detection is underestimated. The method was tested on data sets from two instruments during different weather conditions, including three dust storms during the summer of 2019. Our results reveal that this method can provide an efficient, accurate and real-time classification of lidar measurements. Accordingly, we conclude that machine learning can open new opportunities for lidar data end-users, such as aviation safety operators, to monitor dust in the vicinity of airports.

scholarly journals Meta Learning for Few-Shot One-Class Classification

AI ◽  
2021 ◽  
Vol 2 (2) ◽  
pp. 195-208
Author(s):  
Gabriel Dahia ◽  
Maurício Pamplona Segundo
Keyword(s):  
Feature Representation ◽  
Support Vector ◽  
Support Vector Data Description ◽  
Target Class ◽  
Feature Representations ◽  
Shot Classification ◽  
Training Stage ◽  
Comparable Performance ◽  
Meta Learning ◽  
One Class Classification

We propose a method that can perform one-class classification given only a small number of examples from the target class and none from the others. We formulate the learning of meaningful features for one-class classification as a meta-learning problem in which the meta-training stage repeatedly simulates one-class classification, using the classification loss of the chosen algorithm to learn a feature representation. To learn these representations, we require only multiclass data from similar tasks. We show how the Support Vector Data Description method can be used with our method, and also propose a simpler variant based on Prototypical Networks that obtains comparable performance, indicating that learning feature representations directly from data may be more important than which one-class algorithm we choose. We validate our approach by adapting few-shot classification datasets to the few-shot one-class classification scenario, obtaining similar results to the state-of-the-art of traditional one-class classification, and that improves upon that of one-class classification baselines employed in the few-shot setting.

scholarly journals An edge-cloud collaboration architecture for pattern anomaly detection of time series in wireless sensor networks

2021 ◽  
Author(s):  
Cong Gao ◽  
Ping Yang ◽  
Yanping Chen ◽  
Zhongmin Wang ◽  
Yue Wang
Keyword(s):  
Time Series ◽  
Wireless Sensor Networks ◽  
Sensor Networks ◽  
Anomaly Detection ◽  
Estimation Method ◽  
Feature Representation ◽  
Sensor Data ◽  
Wireless Sensor ◽  
Data Sets ◽  
Edge Node

AbstractWith large deployment of wireless sensor networks, anomaly detection for sensor data is becoming increasingly important in various fields. As a vital data form of sensor data, time series has three main types of anomaly: point anomaly, pattern anomaly, and sequence anomaly. In production environments, the analysis of pattern anomaly is the most rewarding one. However, the traditional processing model cloud computing is crippled in front of large amount of widely distributed data. This paper presents an edge-cloud collaboration architecture for pattern anomaly detection of time series. A task migration algorithm is developed to alleviate the problem of backlogged detection tasks at edge node. Besides, the detection tasks related to long-term correlation and short-term correlation in time series are allocated to cloud and edge node, respectively. A multi-dimensional feature representation scheme is devised to conduct efficient dimension reduction. Two key components of the feature representation trend identification and feature point extraction are elaborated. Based on the result of feature representation, pattern anomaly detection is performed with an improved kernel density estimation method. Finally, extensive experiments are conducted with synthetic data sets and real-world data sets.

scholarly journals Machine Learning Model of Dimensionless Numbers to Predict Flow Patterns and Droplet Characteristics for Two-Phase Digital Flows

2021 ◽  
Vol 11 (9) ◽  
pp. 4251
Author(s):  
Jinsong Zhang ◽  
Shuai Zhang ◽  
Jianhua Zhang ◽  
Zhiliang Wang
Keyword(s):  
Machine Learning ◽  
Learning Algorithms ◽  
Digital Microfluidics ◽  
Flow Patterns ◽  
Machine Learning Algorithms ◽  
Dimensionless Numbers ◽  
Two Phase ◽  
The Difference ◽  
Input Variables ◽  
Digital Microfluidic

In the digital microfluidic experiments, the droplet characteristics and flow patterns are generally identified and predicted by the empirical methods, which are difficult to process a large amount of data mining. In addition, due to the existence of inevitable human invention, the inconsistent judgment standards make the comparison between different experiments cumbersome and almost impossible. In this paper, we tried to use machine learning to build algorithms that could automatically identify, judge, and predict flow patterns and droplet characteristics, so that the empirical judgment was transferred to be an intelligent process. The difference on the usual machine learning algorithms, a generalized variable system was introduced to describe the different geometry configurations of the digital microfluidics. Specifically, Buckingham’s theorem had been adopted to obtain multiple groups of dimensionless numbers as the input variables of machine learning algorithms. Through the verification of the algorithms, the SVM and BPNN algorithms had classified and predicted the different flow patterns and droplet characteristics (the length and frequency) successfully. By comparing with the primitive parameters system, the dimensionless numbers system was superior in the predictive capability. The traditional dimensionless numbers selected for the machine learning algorithms should have physical meanings strongly rather than mathematical meanings. The machine learning algorithms applying the dimensionless numbers had declined the dimensionality of the system and the amount of computation and not lose the information of primitive parameters.

scholarly journals A novel framework for designing a multi-DoF prosthetic wrist control using machine learning

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Chinmay P. Swami ◽  
Nicholas Lenhard ◽  
Jiyeon Kang
Keyword(s):  
Machine Learning ◽  
Random Forest ◽  
Upper Limb ◽  
Daily Living ◽  
Machine Learning Algorithms ◽  
Data Sets ◽  
Random Forest Regression ◽  
Prosthetic Devices ◽  
Upper Limb Function ◽  
The Neural Network

AbstractProsthetic arms can significantly increase the upper limb function of individuals with upper limb loss, however despite the development of various multi-DoF prosthetic arms the rate of prosthesis abandonment is still high. One of the major challenges is to design a multi-DoF controller that has high precision, robustness, and intuitiveness for daily use. The present study demonstrates a novel framework for developing a controller leveraging machine learning algorithms and movement synergies to implement natural control of a 2-DoF prosthetic wrist for activities of daily living (ADL). The data was collected during ADL tasks of ten individuals with a wrist brace emulating the absence of wrist function. Using this data, the neural network classifies the movement and then random forest regression computes the desired velocity of the prosthetic wrist. The models were trained/tested with ADLs where their robustness was tested using cross-validation and holdout data sets. The proposed framework demonstrated high accuracy (F-1 score of 99% for the classifier and Pearson’s correlation of 0.98 for the regression). Additionally, the interpretable nature of random forest regression was used to verify the targeted movement synergies. The present work provides a novel and effective framework to develop an intuitive control for multi-DoF prosthetic devices.

scholarly journals On the Juridical Relevance of the Phenomenological Notion of Person in Max Scheler and Edith Stein

2021 ◽  
Author(s):  
Francesco Galofaro
Keyword(s):  
Artificial Intelligence ◽  
Edmund Husserl ◽  
Phenomenological Analysis ◽  
Machine Learning Algorithms ◽  
Decision Makers ◽  
Edith Stein ◽  
Max Scheler ◽  
Human Decision ◽  
The Difference ◽  
Social Units

AbstractThe paper presents a semiotic interpretation of the phenomenological debate on the notion of person, focusing in particular on Edmund Husserl, Max Scheler, and Edith Stein. The semiotic interpretation lets us identify the categories that orient the debate: collective/individual and subject/object. As we will see, the phenomenological analysis of the relation between person and social units such as the community, the association, and the mass shows similarities to contemporary socio-semiotic models. The difference between community, association, and mass provides an explanation for the establishment of legal systems. The notion of person we inherit from phenomenology can also be useful in facing juridical problems raised by the use of non-human decision-makers such as machine learning algorithms and artificial intelligence applications.

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