scholarly journals Hybridization promotes asexual reproduction in Caenorhabditis nematodes

2019 ◽  
Author(s):  
Piero Lamelza ◽  
Janet M. Young ◽  
Luke M. Noble ◽  
Lews Caro ◽  
Arielle Isakharov ◽  
...  
Keyword(s):  
Asexual Reproduction ◽  
Molecular Mechanisms ◽  
Animal Species ◽  
Nematode Species ◽  
Female Meiosis ◽  
Paternal Genome ◽  
Genetic Incompatibility ◽  
Sexual Species ◽  
Maternal Genome ◽  
Sexual And Asexual Reproduction

ABSTRACTAlthough most unicellular organisms reproduce asexually, most multicellular eukaryotes are obligately sexual. This implies that there are strong barriers that prevent the origin or maintenance of asexuality arising from an obligately sexual ancestor. By studying rare asexual animal species we can gain a better understanding of the circumstances that facilitate their evolution from a sexual ancestor. Of the known asexual animal species, many originated by hybridization between two ancestral sexual species. The balance hypothesis predicts that genetic incompatibilities between the divergent genomes in hybrids can modify meiosis and facilitate asexual reproduction, but there are few instances where this has been shown. Here we report that hybridizing two sexual Caenorhabditis nematode species (C. nouraguensis females and C. becei males) alters the normal inheritance of the maternal and paternal genomes during the formation of hybrid zygotes. Most offspring of this interspecies cross die during embryogenesis, exhibiting inheritance of a diploid C. nouraguensis maternal genome and incomplete inheritance of C. becei paternal DNA. However, a small fraction of offspring develop into viable adults that can be either fertile or sterile. Fertile offspring are produced asexually by sperm-dependent parthenogenesis (also called gynogenesis or pseudogamy); these progeny inherit a diploid maternal genome but fail to inherit a paternal genome. Sterile offspring are hybrids that inherit both a diploid maternal genome and a haploid paternal genome. Whole-genome sequencing of individual viable worms shows that diploid maternal inheritance in both fertile and sterile offspring results from an altered meiosis in C. nouraguensis oocytes and the inheritance of two randomly selected homologous chromatids. We hypothesize that hybrid incompatibility between C. nouraguensis and C. becei modifies maternal and paternal genome inheritance and indirectly induces gynogenetic reproduction. This system can be used to dissect the molecular mechanisms by which hybrid incompatibilities can facilitate the emergence of asexual reproduction.AUTHOR SUMMARYEukaryotes employ two major reproductive strategies: sexual and asexual reproduction. Both types of reproduction have distinct theoretical costs and benefits, and most unicellular eukaryotes can switch between both modes. However, most multicellular eukaryotes are obligately sexual, implying that there are barriers to the evolution of asexuality from a sexual ancestor. Of the few asexual animal species, many are hybrids of two ancestral sexual species, suggesting that novel genetic interactions in hybrids facilitate the evolution of asexuality. One model suggests that genetic incompatibilities between divergent genomes in hybrids can modify female meiosis and paternal genome inheritance to facilitate asexual reproduction. While studying interspecies hybridizations of Caenorhabditis nematodes, we found that crossing two sexual species (C. nouraguensis and C. becei) disrupts female meiosis and paternal genome inheritance. Most offspring die during embryogenesis, but on rare occasions develop into viable and fertile adults that are produced asexually. This asexual reproduction involves the unusual production of eggs carrying two sets of maternal chromosomes and the loss of the paternal set of chromosomes. We hypothesize that genetic incompatibility between these two species disrupts maternal and paternal genome inheritance. This interspecies hybridization may serve as a model to study how genetic incompatibilities facilitate the emergence of asexuality.

scholarly journals The frequency of sex in fungi

2016 ◽  
Vol 371 (1706) ◽  
pp. 20150540 ◽  
Author(s):  
Bart P. S. Nieuwenhuis ◽  
Timothy Y. James
Keyword(s):  
Sexual Reproduction ◽  
Asexual Reproduction ◽  
Population Genetic ◽  
Mixed Mode ◽  
Molecular Mechanisms ◽  
Costs And Benefits ◽  
Ancient Asexual ◽  
Sexual And Asexual Reproduction ◽  
Almost All ◽  
Huge Variation

Fungi are a diverse group of organisms with a huge variation in reproductive strategy. While almost all species can reproduce sexually, many reproduce asexually most of the time. When sexual reproduction does occur, large variation exists in the amount of in- and out-breeding. While budding yeast is expected to outcross only once every 10 000 generations, other fungi are obligate outcrossers with well-mixed panmictic populations. In this review, we give an overview of the costs and benefits of sexual and asexual reproduction in fungi, and the mechanisms that evolved in fungi to reduce the costs of either mode. The proximate molecular mechanisms potentiating outcrossing and meiosis appear to be present in nearly all fungi, making them of little use for predicting outcrossing rates, but also suggesting the absence of true ancient asexual lineages. We review how population genetic methods can be used to estimate the frequency of sex in fungi and provide empirical data that support a mixed mode of reproduction in many species with rare to frequent sex in between rounds of mitotic reproduction. Finally, we highlight how these estimates might be affected by the fungus-specific mechanisms that evolved to reduce the costs of sexual and asexual reproduction. This article is part of the themed issue ‘Weird sex: the underappreciated diversity of sexual reproduction’.

scholarly journals Signatures of the evolution of parthenogenesis and cryptobiosis in panagrolaimid nematodes

2017 ◽  
Author(s):  
Philipp H. Schiffer ◽  
Etienne G.J. Danchin ◽  
Ann M. Burnell ◽  
Anne-Marike Schiffer ◽  
Christopher J. Creevey ◽  
...  
Keyword(s):  
Molecular Mechanisms ◽  
Animal Species ◽  
Gene Families ◽  
Nematode Species ◽  
Model Systems ◽  
Time Model ◽  
C Elegans ◽  
Successful Establishment ◽  
The Cost ◽  
Cost Of Sex

AbstractMost animal species reproduce sexually, but parthenogenesis, asexual reproduction of various forms, has arisen repeatedly. Parthenogenetic lineages are usually short lived in evolution; though in some environments parthenogenesis may be advantageous, avoiding the cost of sex.Panagrolaimusnematodes have colonised environments ranging from arid deserts to arctic and antarctic biomes. Many are parthenogenetic, and most have cryptobiotic abilities, being able to survive repeated complete desiccation and freezing. It is not clear which genomic and molecular mechanisms led to the successful establishment of parthenogenesis and the evolution of cryptobiosis in animals in general. At the same time, model systems to study these traits in the laboratory are missing.We compared the genomes and transcriptomes of parthenogenetic and sexualPanagrolaimusable to survive crybtobiosis, as well as a non-cryptobioticPropanogrolaimusspecies, to identify systems that contribute to these striking abilities. The parthenogens are most probably tripoids originating from hybridisation (allopolyploids). We identified genomic singularities like expansion of gene families, and selection on genes that could be linked to the adaptation to cryptobiosis. AllPanagrolaimushave acquired genes through horizontal transfer, some of which are likely to contribute to cryptobiosis. Many genes acting inC. elegansreproduction and development were absent in distant nematode species (including the Panagrolaimids), suggesting molecular pathways cannot directly be transferred from the model system.The easily culturedPanagrolaimusnematodes offer a system to study developmental diversity in Nematoda, the molecular evolution of parthenogens, the effects of triploidy on genomes stability, and the origin and biology of cryptobiosis.

Gemmae in Tetralophozia setiformis (Anastrophyllaceae, Marchantiophyta) and their second record in Eurasia

2017 ◽  
Vol 51 ◽  
pp. 242-250
Author(s):  
M. V. Dulin
Keyword(s):  
British Columbia ◽  
Asexual Reproduction ◽  
Leaf Shape ◽  
Leaf Size ◽  
Komi Republic ◽  
The Other ◽  
Widespread Species ◽  
Northern Urals ◽  
Sexual And Asexual Reproduction ◽  
Murmansk Region

Tetralophozia setiformis is a widespread species occurring usually without organs of sexual and asexual reproduction. Gemmae of Tetralophozia setiformis were observed for the second time in Russia and Eurasia in the Northern Urals, Komi Republic. They form compact masses over upper leaves. The compact masses consist largely (70 %) of immature gemmae. Description of gemmae and gemmiparous shoots from the Northern Urals and their comparison with those from the other known localities, namely British Columbia (Canada) and the Murmansk Region (European Russia) were carried out. The gemmiparous plants of T. setiformis from the Northern Urals have approximately the same width as plants without gemmae but they are shorter. The leaves of gemmiparous plants from the Northern Urals are similar to leaves of gemmiparous plants from British Columbia. The leaf shape in upper part of the gemmiparous shoots varies from the typical to ± modified from gemmae production. These leaf shape transitions include reduction of leaf size and lobe number from 4 to 2–3, suppression of development and disappearance of characteristic teeth at the base of sinus. Gemmae size (17 × 22 μm) of plants from the Northern Urals is within variability recorded for plants from the Murmansk Region and British Columbia.

Single Nucleotide Substitutions Effectively Block Cas9 and Allow for Scarless Genome Editing in Caenorhabditis elegans

2021 ◽  
Author(s):  
Jeffrey C Medley ◽  
Shilpa Hebbar ◽  
Joel T Sydzyik ◽  
Anna Y. Zinovyeva
Keyword(s):  
Caenorhabditis Elegans ◽  
Genome Editing ◽  
Dna Breaks ◽  
Nucleotide Substitutions ◽  
Paternal Genome ◽  
Single Nucleotide ◽  
C Elegans ◽  
Homology Directed Repair ◽  
Maternal Genome ◽  
Guide Sequence

In Caenorhabditis elegans, germline injection of Cas9 complexes is reliably used to achieve genome editing through homology-directed repair of Cas9-generated DNA breaks. To prevent Cas9 from targeting repaired DNA, additional blocking mutations are often incorporated into homologous repair templates. Cas9 can be blocked either by mutating the PAM sequence that is essential for Cas9 activity or by mutating the guide sequence that targets Cas9 to a specific genomic location. However, it is unclear how many nucleotides within the guide sequence should be mutated, since Cas9 can recognize off-target sequences that are imperfectly paired to its guide. In this study, we examined whether single-nucleotide substitutions within the guide sequence are sufficient to block Cas9 and allow for efficient genome editing. We show that a single mismatch within the guide sequence effectively blocks Cas9 and allows for recovery of edited animals. Surprisingly, we found that a low rate of edited animals can be recovered without introducing any blocking mutations, suggesting a temporal block to Cas9 activity in C. elegans. Furthermore, we show that the maternal genome of hermaphrodite animals is preferentially edited over the paternal genome. We demonstrate that maternally provided haplotypes can be selected using balancer chromosomes and propose a method of mutant isolation that greatly reduces screening efforts post-injection. Collectively, our findings expand the repertoire of genome editing strategies in C. elegans and demonstrate that extraneous blocking mutations are not required to recover edited animals when the desired mutation is located within the guide sequence.

Begonia balangcodiae sp. nov. from northern Luzon, the Philippines and its natural hybrid with B. crispipila, B. × kapangan nothosp. nov.

Phytotaxa ◽  
2019 ◽  
Vol 407 (1) ◽  
pp. 5-21 ◽  
Author(s):  
SHIH-HUI LIU ◽  
YU-HSIN TSENG ◽  
DIAITI ZURE ◽  
ROSARIO RIVERA RUBITE ◽  
TEODORA D. BALANGCOD ◽  
...  
Keyword(s):  
New Species ◽  
Field Survey ◽  
The Philippines ◽  
Southeast Asian ◽  
Herbarium Specimens ◽  
Natural Hybrid ◽  
Paternal Genome ◽  
Molecular Analyses ◽  
Maternal Genome

The pantropically distributed Begonia (Begoniaceae) is one of the most species-rich genera. Philippines is one of the diversity centers of Southeast Asian Begonia. In our 2012 field survey, three species of Begonia section Petermannia were collected in Barangay Sagubo, Municipality of Kapangan, Province of Benguet in the northern Luzon Island, Philippines. Our study on literatures and herbarium specimens suggests that these collections consist of B. crispipila, an unknown new species hereby we named B. balangcodiae, and the natural hybrid between them. Molecular analyses confirm that the former contributed the maternal genome while the latter provided the paternal genome. We name the natural hybrid B. × kapangan, which is the first natural hybrid reported in sect. Petermannia.

scholarly journals Reproductive Strategies of the Seagrass Zostera japonica Under Different Geographic Conditions in Northern China

2020 ◽  
Vol 7 ◽  
Author(s):  
Shidong Yue ◽  
Xiaomei Zhang ◽  
Shaochun Xu ◽  
Yu Zhang ◽  
Peng Zhao ◽  
...  
Keyword(s):  
Sexual Reproduction ◽  
Asexual Reproduction ◽  
Reproductive Strategies ◽  
Geographic Location ◽  
Dry Weight ◽  
Northern China ◽  
Shoot Density ◽  
Zostera Japonica ◽  
Sexual And Asexual Reproduction ◽  
Density And Biomass

Seagrasses form a unique group of submerged marine angiosperms capable of both sexual and asexual reproduction. The amounts of sexual and asexual reproduction differ within some species relying on geographic location and environmental factors. Here, we studied the reproductive strategies of different geographic Zostera japonica populations, S1 and S2 at Swan Lake lagoon (SLL), and H1 and H2 at Huiquan Bay (HQB), in northern China. The duration of flowering at SLL was longer than at HQB, whereas flowering initiation at HQB occurred earlier than at SLL. In addition, the timing of seed maturation at HQB occurred earlier than at SLL. The allocation to sexual reproduction at SLL was greater than at HQB. The maximum potential seed production was greatest at S1 (22228.52 ± 8832.46 seeds ⋅ m–2), followed by S2 (21630.34 ± 9378.67 seeds ⋅ m–2), H2 (7459.60 ± 1779.33 seeds ⋅ m–2), and H1 (2821.05 ± 1280.57 seeds ⋅ m–2). The seasonal changes in total shoot density and biomass were small at HQB. There was a relatively large number of overwintering shoots at HQB because of the higher average temperature during winter. The allocation to sexual reproduction was lower than at SLL, and no seedlings were observed at HQB during our study. Thus, the population of Z. japonica at HQB was maintained by asexual reproduction. Compared with HQB, the biomass of overwintering shoots at SLL was less than 30 g dry weight ⋅ m–2. The Z. japonica at SLL relied on asexual and sexual reproduction to maintain the population. The results show the necessity of understanding local reproductive strategies before starting restoration and management projects. The study provides fundamental information and guidance for the conservation and restoration of seagrass beds.

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