scholarly journals A generic deviance detection principle for cortical On/Off responses, omission response, and mismatch negativity

2019 ◽  
Author(s):  
Shih-Cheng Chien ◽  
Burkhard Maess ◽  
Thomas R. Knösche

AbstractNeural responses to sudden changes can be observed in many parts of the sensory pathways at different organizational levels. For example, deviants that violate regularity at various levels of abstraction can be observed as simple On/Off responses of individual neurons or as cumulative responses of neural populations. The cortical deviance-related responses supporting different functionalities (e.g. gap detection, chunking, etc.) seem unlikely to arise from different function-specific neural circuits, given the relatively uniform and self-similar wiring patterns across cortical areas and spatial scales. Additionally, reciprocal wiring patterns (with heterogeneous combinations of excitatory and inhibitory connections) in the cortex naturally speak in favor of a generic deviance detection principle. Based on this concept, we propose a network model consisting of reciprocally coupled neural masses as a blueprint of a universal change detector. Simulation examples reproduce properties of cortical deviance-related responses including the On/Off responses, the omitted-stimulus response (OSR), and the mismatch negativity (MMN). We propose that the emergence of change detectors relies on the involvement of disinhibition. The analysis on network connection settings further suggests a supportive effect of synaptic adaptation and a destructive effect of N-methyl-D-aspartate receptor (NMDA-r) antagonists on change detection. We conclude that the nature of cortical reciprocal wirings gives rise to a whole range of local change detectors supporting the notion of a generic deviance detection principle. Several testable predictions are provided based on the network model. Notably, we predict that the NMDA-r antagonists would generally dampen the cortical Off response, the cortical OSR, and the MMN.

2019 ◽  
Vol 113 (5-6) ◽  
pp. 475-494 ◽  
Author(s):  
Vincent S. C. Chien ◽  
Burkhard Maess ◽  
Thomas R. Knösche

2020 ◽  
Vol 245 ◽  
pp. 07010
Author(s):  
Marcelo Vogel ◽  
Mikhail Borodin ◽  
Alessandra Forti ◽  
Lukas Heinrich

This paper describes the deployment of the offline software of the ATLAS experiment at LHC in containers for use in production workflows such as simulation and reconstruction. To achieve this goal we are using Docker and Singularity, which are both lightweight virtualization technologies that can encapsulate software packages inside complete file systems. The deployment of offline releases via containers removes the interdependence between the runtime environment needed for job execution and the configuration of the computing nodes at the sites. Docker or Singularity would provide a uniform runtime environment for the grid, HPCs and for a variety of opportunistic resources. Additionally, releases may be supplemented with a detector’s conditions data, thus removing the need for network connectivity at computing nodes, which is normally quite restricted for HPCs. In preparation to achieve this goal, we have built Docker and Singularity images containing single full releases of ATLAS software for running detector simulation and reconstruction jobs in runtime environments without a network connection. Unlike similar efforts to produce containers by packing all possible dependencies of every possible workflow into heavy images (≈ 200GB), our approach is to include only what is needed for specific workflows and to manage dependencies efficiently via software package managers. This approach leads to more stable packaged releases where the dependencies are clear and the resulting images have more portable sizes ( 16GB). In an effort to cover a wider variety of workflows, we are deploying images that can be used in raw data reconstruction. This is particularly challenging due to the high database resource consumption during the access to the experiment’s conditions payload when processing data. We describe here a prototype pipeline in which images are provisioned only with the conditions payload necessary to satisfy the jobs’ requirements. This database-on-demand approach would keep images slim, portable and capable of supporting various workflows in a standalone fashion in environments with no network connectivity.


PLoS ONE ◽  
2013 ◽  
Vol 8 (12) ◽  
pp. e82663 ◽  
Author(s):  
Tomoyo Isoguchi Shiramatsu ◽  
Ryohei Kanzaki ◽  
Hirokazu Takahashi

2014 ◽  
Vol 29 (5) ◽  
pp. 446-458 ◽  
Author(s):  
Verner Knott ◽  
Danielle Impey ◽  
Tristan Philippe ◽  
Dylan Smith ◽  
Joelle Choueiry ◽  
...  

2010 ◽  
Vol 1331 ◽  
pp. 88-95 ◽  
Author(s):  
Annekathrin Weise ◽  
Sabine Grimm ◽  
Dagmar Müller ◽  
Erich Schröger

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