scholarly journals Estimating the fitness effect of deleterious mutations during the two phases of the life cycle: a new method applied to the root-rot fungusHeterobasidion parviporum

2018 ◽  
Author(s):  
Pierre-Henri Clergeot ◽  
Nicolas O. Rode ◽  
Sylvain Glémin ◽  
Mikael Brandström-Durling ◽  
Katarina Ihrmark ◽  
...  
Keyword(s):  
Growth Rate ◽  
Life Cycle ◽  
Genetic Distance ◽  
Root Rot ◽  
Genetic Model ◽  
Diploid Species ◽  
Life Cycles ◽  
Deleterious Mutations ◽  
Mycelium Growth ◽  
Two Phases

AbstractMany eukaryote species including taxa such as fungi or algae have a lifecycle with substantial haploid and diploid phases. A recent theoretical model predicts that such haploid-diploid lifecycles are stable over long evolutionary time scales when segregating deleterious mutations have stronger effects in homozygous diploids than in haploids and when they are partially recessive in heterozygous diploids. The model predicts that effective dominance, a measure that accounts for these two effects, should be close to 0.5 in these species. It also predicts that diploids should have higher fitness than haploids on average. However, an appropriate statistical framework to conjointly investigate these predictions is currently lacking. In this study, we derive a new quantitative genetic model to test these predictions using fitness data of two haploid parents and their diploid offspring and genome-wide genetic distance between haploid parents. We apply this model to the root-rot basidiomycete fungusHeterobasidion parviporum, a species where the heterokaryotic (equivalent to the diploid) phase is longer than the homokaryotic (haploid) phase. We measured two fitness-related traits (mycelium growth rate and the ability to degrade wood) in both homokaryons and heterokaryons and we used whole-genome sequencing to estimate nuclear genetic distance between parents. Possibly due to a lack of power, we did not find that deleterious mutations were recessive or more deleterious when expressed during the heterokaryotic phase. Using this model to compare effective dominance among haploid-diploid species where the relative importance of the two phases varies should help better understand the evolution of haploid-diploid life cycles.Article summary for Issue HighlightsMany eukaryote species including taxa such as fungi or algae spend a large portion of their life cycle as haploids and as diploids. Clergeot, Rodeet al.derive a statistical model to test whether deleterious mutations have stronger effects in homozygous diploids than in haploids, whether they are partially recessive in heterozygous diploids and whether diploids have higher fitness than haploids on average. As an illustration, they use their model to study growth rate and the ability to degrade wood in the root-rot fungusHeterobasidion parviporum. Their model should help gaining further insights into the evolution of haploid-diploid life cycles.

scholarly journals Estimating the Fitness Effect of Deleterious Mutations During the Two Phases of the Life Cycle: A New Method Applied to the Root-Rot Fungus Heterobasidion parviporum

Genetics ◽  
2018 ◽  
Vol 211 (3) ◽  
pp. 963-976 ◽  
Author(s):  
Pierre-Henri Clergeot ◽  
Nicolas O. Rode ◽  
Sylvain Glémin ◽  
Mikael Brandström Durling ◽  
Katarina Ihrmark ◽  
...  
Keyword(s):  
Genetic Distance ◽  
Root Rot ◽  
Genetic Model ◽  
Diploid Species ◽  
Life Cycles ◽  
Deleterious Mutations ◽  
Mycelium Growth ◽  
Statistical Framework ◽  
Quantitative Genetic Model ◽  
Two Phases

Many eukaryote species, including taxa such as fungi or algae, have a lifecycle with substantial haploid and diploid phases. A recent theoretical model predicts that such haploid-diploid lifecycles are stable over long evolutionary time scales when segregating deleterious mutations have stronger effects in homozygous diploids than in haploids and when they are partially recessive in heterozygous diploids. The model predicts that effective dominance—a measure that accounts for these two effects—should be close to 0.5 in these species. It also predicts that diploids should have higher fitness than haploids on average. However, an appropriate statistical framework to conjointly investigate these predictions is currently lacking. In this study, we derive a new quantitative genetic model to test these predictions using fitness data of two haploid parents and their diploid offspring, and genome-wide genetic distance between haploid parents. We apply this model to the root-rot basidiomycete fungus Heterobasidion parviporum—a species where the heterokaryotic (equivalent to the diploid) phase is longer than the homokaryotic (haploid) phase. We measured two fitness-related traits (mycelium growth rate and the ability to degrade wood) in both homokaryons and heterokaryons, and we used whole-genome sequencing to estimate nuclear genetic distance between parents. Possibly due to a lack of power, we did not find that deleterious mutations were recessive or more deleterious when expressed during the heterokaryotic phase. Using this model to compare effective dominance among haploid-diploid species where the relative importance of the two phases varies should help better understand the evolution of haploid-diploid life cycles.

scholarly journals Fragmentation modes and the evolution of life cycles

2017 ◽  
Author(s):  
Yuriy Pichugin ◽  
Jorge Peña ◽  
Paul B. Rainey ◽  
Arne Traulsen
Keyword(s):  
Growth Rate ◽  
Life Cycle ◽  
Population Growth ◽  
Population Growth Rate ◽  
Single Cells ◽  
Adaptive Significance ◽  
Life Cycles ◽  
Mode Of Reproduction ◽  
Size Groups ◽  
Multicellular Organisms

AbstractReproduction is a defining feature of living systems. To reproduce, aggregates of biological units (e.g., multicellular organisms or colonial bacteria) must fragment into smaller parts. Fragmentation modes in nature range from binary fission in bacteria to collective-level fragmentation and the production of unicellular propagules in multicellular organisms. Despite this apparent ubiquity, the adaptive significance of fragmentation modes has received little attention. Here, we develop a model in which groups arise from the division of single cells that do not separate but stay together until the moment of group fragmentation. We allow for all possible fragmentation patterns and calculate the population growth rate of each associated life cycle. Fragmentation modes that maximise growth rate comprise a restrictive set of patterns that include production of unicellular propagules and division into two similar size groups. Life cycles marked by single-cell bottlenecks maximise population growth rate under a wide range of conditions. This surprising result offers a new evolutionary explanation for the widespread occurrence of this mode of reproduction. All in all, our model provides a framework for exploring the adaptive significance of fragmentation modes and their associated life cycles.Author SummaryMode of reproduction is a defining trait of all organisms, including colonial bacteria and multicellular organisms. To produce offspring, aggregates must fragment by splitting into two or more groups. The particular way that a given group fragments defines the life cycle of the organism. For instance, insect colonies can reproduce by splitting or by producing individuals that found new colonies. Similarly, some colonial bacteria propagate by fission or by releasing single cells, while others split in highly sophisticated ways; in multicellular organisms reproduction typically proceeds via a single cell bottleneck phase. The space of possibilities for fragmentation is so vast that an exhaustive analysis seems daunting. Focusing on fragmentation modes of a simple kind we parametrise all possible modes of group fragmentation and identify those modes leading to the fastest population growth rate. Two kinds of life cycle dominate: one involving division into two equal size groups, and the other involving production of a unicellular propagule. The prevalence of these life cycles in nature is consistent with our null model and suggests that benefits accruing from population growth rate alone may have shaped the evolution of fragmentation mode.

scholarly journals Multifaceted Roles of ICP22/ORF63 Proteins in the Life Cycle of Human Herpesviruses

2021 ◽  
Vol 12 ◽  
Author(s):  
Ying Wu ◽  
Qiqi Yang ◽  
Mingshu Wang ◽  
Shun Chen ◽  
Renyong Jia ◽  
...  
Keyword(s):  
Life Cycle ◽  
Latent Infection ◽  
Immune Surveillance ◽  
Life Cycles ◽  
Lytic Infection ◽  
Lytic Cycle ◽  
Host Interactions ◽  
Two Phases ◽  
Complex Relationships ◽  
Human Herpesviruses

Herpesviruses are extremely successful parasites that have evolved over millions of years to develop a variety of mechanisms to coexist with their hosts and to maintain host-to-host transmission and lifelong infection by regulating their life cycles. The life cycle of herpesviruses consists of two phases: lytic infection and latent infection. During lytic infection, active replication and the production of numerous progeny virions occur. Subsequent suppression of the host immune response leads to a lifetime latent infection of the host. During latent infection, the viral genome remains in an inactive state in the host cell to avoid host immune surveillance, but the virus can be reactivated and reenter the lytic cycle. The balance between these two phases of the herpesvirus life cycle is controlled by broad interactions among numerous viral and cellular factors. ICP22/ORF63 proteins are among these factors and are involved in transcription, nuclear budding, latency establishment, and reactivation. In this review, we summarized the various roles and complex mechanisms by which ICP22/ORF63 proteins regulate the life cycle of human herpesviruses and the complex relationships among host and viral factors. Elucidating the role and mechanism of ICP22/ORF63 in virus–host interactions will deepen our understanding of the viral life cycle. In addition, it will also help us to understand the pathogenesis of herpesvirus infections and provide new strategies for combating these infections.

Life Cycle Development of Successful Women-owned Enterprises

2020 ◽  
Vol 3 (4) ◽  
pp. 142-152
Author(s):  
Mohammad Waliul Hasanat ◽  
Kamna Anum ◽  
Ashikul Hoque ◽  
Mahmud Hamid ◽  
Sandy Francis Peris ◽  
...  
Keyword(s):  
Life Cycle ◽  
Data Collection ◽  
Research Work ◽  
Primary Data ◽  
Small Scale ◽  
Data Collection Process ◽  
Theoretical Finding ◽  
Successful Women ◽  
Two Phases ◽  
Life Cycle Development

In developing countries, the role of women in the business sector is continuously improving. As a result, female enterprises have also been encouraged in Pakistan. This study is based on life cycle development phases from which women-owned enterprises have to go through in order to become successful. As a primary data source, face-to-face interviews with owners of successful women-owned enterprises were preferred. The data collection process was divided into two phases i.e. Phase-I and Phase-II. After data collection, qualitative analysis has been performed using NVIVO. Findings provide both generic and specific factors involved in life cycle development of women-owned enterprises. This study provides a detailed view of life cycle development model followed by successful women enterprises. The outcome of this research work is a theoretical finding which can be utilized by entrepreneurs owning small scale enterprises to improve their level of performance. Findings can also be helpful for potentially talented women interested in setting up their own business.

MERGERS AND ACQUISITIONS AND THEIR CORRELATION WITH THE LIFE CYCLES OF MEMBER COMPANIES ON THE EXAMPLE OF THE RUSSIAN MARKET 2017–2019

2020 ◽  
Vol 1 (10) ◽  
pp. 26-35
Author(s):  
E. A. SHUBINA ◽  
◽  
Yu. A. KOMAROVSKY ◽  
A. V. MERKUSHEV ◽  
◽  
...  
Keyword(s):  
Life Cycle ◽  
Mergers And Acquisitions ◽  
Life Cycles ◽  
Russian Market

The article is devoted to the study of the largest mergers and acquisitions (M&A, “Mergers & Acquisitions”) in Russia for 2017–2019. (the acquired block of shares is not less than 99%). The concept of life cycles of organizations and theoretical aspects of mergers and acquisitions are described. The stages of the life cycle of the merged and reorganized companies, the goals of mergers and acquisitions, depending on the stages of the life cycle are analyzed.

Life cycle of self-propelled machinery with waste generation at its disposal

2020 ◽  
pp. 28-35
Author(s):  
Valeriy S. Gerasimov ◽  
Vladimir I. Ignatov ◽  
Konstantin G. Sovin
Keyword(s):  
Life Cycle ◽  
Life Cycles ◽  
The State ◽  
Research Purpose ◽  
Industrial Complex ◽  
Agricultural Machinery ◽  
Resource Saving ◽  
Secondary Resources ◽  
Branch System ◽  
Additional Funding

According to forecasts for 2022, the number of self-propelled agricultural machinery that will fail will be about 100 thousand units. This will have a significant impact on the overall productivity in the field of agricultural production and will require additional financial costs for effective resource-saving environmental-oriented utilization of agricultural machinery with the maximum recovery of secondary resources in the processing of its components. (Research purpose) The research purpose is considering the main life cycles of machinery, including agricultural, and determining the possibility of obtaining secondary resources in the recycling of components of machinery and equipment. (Materials and methods) The authors found that the establishment of an industry-wide recycling system would allow the reuse of usable and recovered parts obtained from decommissioned equipment, as well as receive additional funding from the sale of secondary resources. The authors have found that for the functioning of the whole system, it is necessary to work with a large amount of data related to the ongoing recycling processes, as well as constantly monitor changes in the state and properties of materials. They also found that the maximum use of digital technology is the only way to combine all these requirements and make the system work. (Results and discussion) The article reviews the key points of the use of life cycle method for equipment, including agricultural, reviews the state of machine and tractor park of agro-industrial complex, shows the possibility of using resource-saving ecologically oriented branch system of recycling of agricultural machinery, as well as the movement of waste and material flows in the processing components of utilized machines. (Conclusion) The article presents recommendations on the possibility of efficient disposal of equipment, including agricultural, with the maximum recovery of secondary resources from recycled waste.

Life cycles of the rhizocephalan Boschmaella japonica Deichmann & Høeg, 1990 (Cirripedia: Chthamalophilidae) and its host barnacle Chthamalus challengeri Hoek, 1883 (Cirripedia: Chthamalidae)

2020 ◽  
Vol 40 (6) ◽  
pp. 825-832 ◽  
Author(s):  
Miku Yabuta ◽  
Jens T Høeg ◽  
Shigeyuki Yamato ◽  
Yoichi Yusa
Keyword(s):  
Life Cycle ◽  
Brood Size ◽  
Life Cycles ◽  
The Body ◽  
Egg Volume ◽  
Size Number ◽  
Rhizocephalan Barnacles ◽  
Western Japan ◽  
Upper Intertidal ◽  
Chthamalus Challengeri

Abstract Although parasitic castration is widespread among rhizocephalan barnacles, Boschmaella japonica Deichmann & Høeg, 1990 does not completely sterilise the host barnacle Chthamalus challengeri Hoek, 1883. As little information is available on the relationships with the host in “barnacle-infesting parasitic barnacles” (family Chthamalophilidae), we studied the life cycles of both B. japonica and C. challengeri and the effects of the parasite on the host reproduction. Specimens of C. challengeri were collected from an upper intertidal shore at Shirahama, Wakayama, western Japan from April 2017 to September 2018 at 1–3 mo intervals. We recorded the body size, number of eggs, egg volume, and the presence of the parasite for each host. Moreover, settlement and growth of C. challengeri were followed in two fixed quadrats. Chthamalus challengeri brooded from February to June. The prevalence of B. japonica was high (often exceeded 10%) from April to July, and was rarely observed from September to next spring. The life cycle of the parasite matched well with that of the host. The parasite reduced the host’s brooding rate and brood size, to the extent that no hosts brooded in 2018.

scholarly journals Advances of 2nd Life Applications for Lithium Ion Batteries from Electric Vehicles Based on Energy Demand

2021 ◽  
Vol 13 (10) ◽  
pp. 5726
Author(s):  
Aleksandra Wewer ◽  
Pinar Bilge ◽  
Franz Dietrich
Keyword(s):  
Life Cycle ◽  
Lithium Ion Batteries ◽  
Electric Vehicles ◽  
Energy Demand ◽  
Lithium Ion ◽  
Life Cycles ◽  
Future Research ◽  
Research Areas ◽  
Study Results ◽  
The Impact

Electromobility is a new approach to the reduction of CO2 emissions and the deceleration of global warming. Its environmental impacts are often compared to traditional mobility solutions based on gasoline or diesel engines. The comparison pertains mostly to the single life cycle of a battery. The impact of multiple life cycles remains an important, and yet unanswered, question. The aim of this paper is to demonstrate advances of 2nd life applications for lithium ion batteries from electric vehicles based on their energy demand. Therefore, it highlights the limitations of a conventional life cycle analysis (LCA) and presents a supplementary method of analysis by providing the design and results of a meta study on the environmental impact of lithium ion batteries. The study focuses on energy demand, and investigates its total impact for different cases considering 2nd life applications such as (C1) material recycling, (C2) repurposing and (C3) reuse. Required reprocessing methods such as remanufacturing of batteries lie at the basis of these 2nd life applications. Batteries are used in their 2nd lives for stationary energy storage (C2, repurpose) and electric vehicles (C3, reuse). The study results confirm that both of these 2nd life applications require less energy than the recycling of batteries at the end of their first life and the production of new batteries. The paper concludes by identifying future research areas in order to generate precise forecasts for 2nd life applications and their industrial dissemination.

scholarly journals Life Cycle Assessment of Households in Santiago, Chile: Environmental Hotspots and Policy Analysis

2021 ◽  
Vol 13 (5) ◽  
pp. 2525
Author(s):  
Camila López-Eccher ◽  
Elizabeth Garrido-Ramírez ◽  
Iván Franchi-Arzola ◽  
Edmundo Muñoz
Keyword(s):  
Global Warming ◽  
Life Cycle Assessment ◽  
Life Cycle ◽  
Environmental Impacts ◽  
Food Consumption ◽  
Household Income ◽  
Resource Scarcity ◽  
Life Cycles ◽  
The Impact ◽  
Freshwater Eutrophication

The aim of this study is to assess the environmental impacts of household life cycles in Santiago, Chile, by household income level. The assessment considered scenarios associated with environmental policies. The life cycle assessment was cradle-to-grave, and the functional unit considered all the materials and energy required to meet an inhabitant’s needs for one year (1 inh/year). Using SimaPro 9.1 software, the Recipe Midpoint (H) methodology was used. The impact categories selected were global warming, fine particulate matter formation, terrestrial acidification, freshwater eutrophication, freshwater ecotoxicity, mineral resource scarcity, and fossil resource scarcity. The inventory was carried out through the application of 300 household surveys and secondary information. The main environmental sources of households were determined to be food consumption, transport, and electricity. Food consumption is the main source, responsible for 33% of the environmental impacts on global warming, 69% on terrestrial acidification, and 29% on freshwater eutrophication. The second most crucial environmental hotspot is private transport, whose contribution to environmental impact increases as household income rises, while public transport impact increases in the opposite direction. In this sense, both positive and negative environmental effects can be generated by policies. Therefore, life-cycle environmental impacts, the synergy between policies, and households’ socio-economic characteristics must be considered in public policy planning and consumer decisions.

scholarly journals Robustness of life histories to environmental variability in complex versus simple life cycles

2021 ◽  
Author(s):  
Annie Jonsson
Keyword(s):  
Growth Rate ◽  
Life Histories ◽  
Environmental Variability ◽  
Life Cycles ◽  
Relative Advantage ◽  
Complex Life Cycle ◽  
Life Stages ◽  
Vital Rates ◽  
Habitat Separation ◽  
Simple Life

AbstractMost animal species have a complex life cycle (CLC) with metamorphosis. It is thus of interest to examine possible benefits of such life histories. The prevailing view is that CLC represents an adaptation for genetic decoupling of juvenile and adult traits, thereby allowing life stages to respond independently to different selective forces. Here I propose an additional potential advantage of CLCs that is, decreased variance in population growth rate due to habitat separation of life stages. Habitat separation of pre- and post-metamorphic stages means that the stages will experience different regimes of environmental variability. This is in contrast to species with simple life cycles (SLC) whose life stages often occupy one and the same habitat. The correlation in the fluctuations of the vital rates of life stages is therefore likely to be weaker in complex than in simple life cycles. By a theoretical framework using an analytical approach, I have (1) derived the relative advantage, in terms of long-run growth rate, of CLC over SLC phenotypes for a broad spectrum of life histories, and (2) explored which life histories that benefit most by a CLC, that is avoid correlation in vital rates between life stages. The direction and magnitude of gain depended on life history type and fluctuating vital rate. One implication of our study is that species with CLCs should, on average, be more robust to increased environmental variability caused by global warming than species with SLCs.

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