scholarly journals Radtools: R utilities for smooth navigation of medical image data

2018 ◽  
Author(s):  
Pamela H Russell ◽  
Debashis Ghosh
Keyword(s):  
Medical Image ◽  
Image Data ◽  
R Package ◽  
Image Series ◽  
Link Type ◽  
File Formats ◽  
Medical Image Data ◽  
Image Metadata ◽  
The Individual ◽  
Radiological Image

AbstractThe radiology community has adopted several widely used standards for medical image files, including the popular DICOM (Digital Imaging and Communication in Medicine) and NIfTI (Neuroimaging Informatics Technology Initiative) standards. These file formats include image intensities as well as potentially extensive metadata. The NIfTI standard specifies a particular set of header fields describing the image and minimal information about the scan. DICOM headers can include any of over 4,000 available metadata attributes spanning a variety of topics. NIfTI files contain all slices for an image series, while DICOM files capture single slices and image series are typically organized into a directory. Each DICOM file contains metadata for the image series as well as the individual image slice.The programming environment R is popular for data analysis due to its free and open code, active ecosystem of tools and users, and excellent system of contributed packages. Currently, many published radiological image analyses are performed with proprietary software or custom unpublished scripts. However, R is increasing in popularity in this area due to several packages for processing and analysis of image files. While these R packages handle image import and processing, no existing package makes image metadata conveniently accessible. Extracting image metadata, combining across slices, and converting to useful formats can be prohibitively cumbersome, especially for DICOM files.We present radtools, an R package for smooth navigation of medical image data. Radtools makes the problem of extracting image metadata trivially simple, providing simple functions to explore and return information in familiar R data structures. Radtools also facilitates extraction of image data and viewing of image slices. The package is freely available under the MIT license at https://github.com/pamelarussell/radtools and is easily installable from the Comprehensive R Archive Network (https://cran.r-project.org/package=radtools).

scholarly journals Radtools: R utilities for smooth navigation of medical image data

F1000Research ◽  
2018 ◽  
Vol 7 ◽  
pp. 1976
Author(s):  
Pamela H. Russell ◽  
Debashis Ghosh
Keyword(s):  
Medical Image ◽  
Image Data ◽  
R Package ◽  
Image Series ◽  
Link Type ◽  
File Formats ◽  
Medical Image Data ◽  
Image Metadata ◽  
The Individual ◽  
Radiological Image

The radiology community has adopted several widely used standards for medical image files, including the popular DICOM (Digital Imaging and Communication in Medicine) and NIfTI (Neuroimaging Informatics Technology Initiative) standards. These file formats include image intensities as well as potentially extensive metadata. The NIfTI standard specifies a particular set of header fields describing the image and minimal information about the scan. DICOM headers can include any of >4,000 available metadata attributes spanning a variety of topics. NIfTI files contain all slices for an image series, while DICOM files capture single slices and image series are typically organized into a directory. Each DICOM file contains metadata for the image series as well as the individual image slice. The programming environment R is popular for data analysis due to its free and open code, active ecosystem of tools and users, and excellent system of contributed packages. Currently, many published radiological image analyses are performed with proprietary software or custom unpublished scripts. However, R is increasing in popularity in this area due to several packages for processing and analysis of image files. While these R packages handle image import and processing, no existing package makes image metadata conveniently accessible. Extracting image metadata, combining across slices, and converting to useful formats can be prohibitively cumbersome, especially for DICOM files. We present radtools, an R package for smooth navigation of medical image data. Radtools makes the problem of extracting image metadata trivially simple, providing simple functions to explore and return information in familiar R data structures. Radtools also facilitates extraction of image data and viewing of image slices. The package is freely available under the MIT license at https://github.com/pamelarussell/radtools and is easily installable from the Comprehensive R Archive Network (https://cran.r-project.org/package=radtools).

scholarly journals Radtools: R utilities for convenient extraction of medical image metadata

F1000Research ◽  
2019 ◽  
Vol 7 ◽  
pp. 1976
Author(s):  
Pamela H. Russell ◽  
Debashis Ghosh
Keyword(s):  
Medical Image ◽  
R Package ◽  
Image Series ◽  
Link Type ◽  
File Formats ◽  
R Packages ◽  
Image Metadata ◽  
The Individual ◽  
Radiological Image ◽  
Minimal Information

The radiology community has adopted several widely used standards for medical image files, including the popular DICOM (Digital Imaging and Communication in Medicine) and NIfTI (Neuroimaging Informatics Technology Initiative) standards. These file formats include image intensities as well as potentially extensive metadata. The NIfTI standard specifies a particular set of header fields describing the image and minimal information about the scan. DICOM headers can include any of >4,000 available metadata attributes spanning a variety of topics. NIfTI files contain all slices for an image series, while DICOM files capture single slices and image series are typically organized into a directory. Each DICOM file contains metadata for the image series as well as the individual image slice. The programming environment R is popular for data analysis due to its free and open code, active ecosystem of tools and users, and excellent system of contributed packages. Currently, many published radiological image analyses are performed with proprietary software or custom unpublished scripts. However, R is increasing in popularity in this area due to several packages for processing and analysis of image files. While these R packages handle image import and processing, no existing package makes image metadata conveniently accessible. Extracting image metadata, combining across slices, and converting to useful formats can be prohibitively cumbersome, especially for DICOM files. We present radtools, an R package for convenient extraction of medical image metadata. Radtools provides simple functions to explore and return metadata in familiar R data structures. For convenience, radtools also includes wrappers of existing tools for extraction of pixel data and viewing of image slices. The package is freely available under the MIT license at GitHub and is easily installable from the Comprehensive R Archive Network.

scholarly journals Radtools: R utilities for convenient extraction of medical image metadata

F1000Research ◽  
2019 ◽  
Vol 7 ◽  
pp. 1976
Author(s):  
Pamela H. Russell ◽  
Debashis Ghosh
Keyword(s):  
Medical Image ◽  
R Package ◽  
Image Series ◽  
Link Type ◽  
File Formats ◽  
R Packages ◽  
Image Metadata ◽  
The Individual ◽  
Radiological Image ◽  
Minimal Information

The radiology community has adopted several widely used standards for medical image files, including the popular DICOM (Digital Imaging and Communication in Medicine) and NIfTI (Neuroimaging Informatics Technology Initiative) standards. These file formats include image intensities as well as potentially extensive metadata. The NIfTI standard specifies a particular set of header fields describing the image and minimal information about the scan. DICOM headers can include any of >4,000 available metadata attributes spanning a variety of topics. NIfTI files contain all slices for an image series, while DICOM files capture single slices and image series are typically organized into a directory. Each DICOM file contains metadata for the image series as well as the individual image slice. The programming environment R is popular for data analysis due to its free and open code, active ecosystem of tools and users, and excellent system of contributed packages. Currently, many published radiological image analyses are performed with proprietary software or custom unpublished scripts. However, R is increasing in popularity in this area due to several packages for processing and analysis of image files. While these R packages handle image import and processing, no existing package makes image metadata conveniently accessible. Extracting image metadata, combining across slices, and converting to useful formats can be prohibitively cumbersome, especially for DICOM files. We present radtools, an R package for convenient extraction of medical image metadata. Radtools provides simple functions to explore and return metadata in familiar R data structures. For convenience, radtools also includes wrappers of existing tools for extraction of pixel data and viewing of image slices. The package is freely available under the MIT license at https://github.com/pamelarussell/radtools and is easily installable from the Comprehensive R Archive Network (https://cran.r-project.org/package=radtools).

scholarly journals Design and Implementation of Compressed Medical Data over an Authenticated Secured

2020 ◽  
Vol 9 (3) ◽  
pp. 1543-1548
Keyword(s):  
Medical Image ◽  
Research Work ◽  
Health Sector ◽  
Image Data ◽  
Medical Data ◽  
Information Network ◽  
Design And Implementation ◽  
Simulation Results ◽  
Medical Image Data ◽  
Secure Transmission

Ideally, secure transmission of medical image data is one of the major challenges in health sector. The National Health Information Network has to protect the data in confidential manner. Storage is also one of the basic concern along with secure transmission. In this paper we propose an algorithm that supports confidentiality, authentication and integrity implementation of the scrambled data before transmitting on the communication medium. Before communication the data is compressed while keeping data encrypted. The research work demonstrate with simulation results. The results shows that the proposed work effectively maintains confidentiality, authentication and integrity. The experimental results evaluated medical image quality like PSNR, MSE, SC, and NAEetc.

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