scholarly journals The two active glutamates of the plant stress sensor PsbS contribute non-equivalently to its pH-activated molecular response mechanism

2018 ◽  
Author(s):  
Maithili Krishnan ◽  
Patrick E. Konold ◽  
John T.M. Kennis ◽  
Anjali Pandit

ABSTRACTThe membrane protein Photosystem II subunit S (PsbS) is a pH sensor that plays an essential role in signaling light stress in plants to prevent photo oxidation and generation of detrimental reactive species. PsbS detects thylakoid lumen acidification in excess light conditions via two glutamates facing the lumen, however, its molecular mechanism for activation has remained elusive. We performed an infrared and 2-dimensional infrared spectroscopic analysis of wild type Physcomitrella patens PsbS and of mutants in which the active glutamates have been replaced: E71Q, E176Q (the equivalent of E69Q and E173Q in spinach PsbS) and the double mutant E71Q/E176Q. We discovered that E71 exerts allosteric control of PsbS dimerization, while E176 is essential for the secondary structural response to low pH. Based on our results, we propose a molecular pH response mechanism that involves re-positioning of the amphipathic short helix facing the lumen, whereby it moves from the aqueous phase into the hydrophobic membrane phase upon lowering the pH. This structural mechanism may be a shared motif of protein molecular switches of the light-harvesting family and its elucidation could open new routes for crops engineering to improve photosynthetic production of biomass.

2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Maithili Krishnan-Schmieden ◽  
Patrick E. Konold ◽  
John T. M. Kennis ◽  
Anjali Pandit

AbstractPlants need to protect themselves from excess light, which causes photo-oxidative damage and lowers the efficiency of photosynthesis. Photosystem II subunit S (PsbS) is a pH sensor protein that plays a crucial role in plant photoprotection by detecting thylakoid lumen acidification in excess light conditions via two lumen-faced glutamates. However, how PsbS is activated under low-pH conditions is unknown. To reveal the molecular response of PsbS to low pH, here we perform an NMR, FTIR and 2DIR spectroscopic analysis of Physcomitrella patens PsbS and of the E176Q mutant in which an active glutamate has been replaced. The PsbS response mechanism at low pH involves the concerted action of repositioning of a short amphipathic helix containing E176 facing the lumen and folding of the luminal loop fragment adjacent to E71 to a 310-helix, providing clear evidence of a conformational pH switch. We propose that this concerted mechanism is a shared motif of proteins of the light-harvesting family that may control thylakoid inter-protein interactions driving photoregulatory responses.


2016 ◽  
Vol 120 (40) ◽  
pp. 23104-23110 ◽  
Author(s):  
Tao Xie ◽  
Chao Jing ◽  
Meng Li ◽  
Wei Ma ◽  
Zhifeng Ding ◽  
...  

2015 ◽  
Vol 12 (12) ◽  
pp. 44-47
Author(s):  
Suchi Srivastava ◽  
Raja Ram Pradhananga

A solid Fe2O3-graphite composite electrode was prepared and investigated for use as a potentiometric pH sensor. The electrode was constructed by mixing iron (III) oxide, oxidized graphite and wax that was put over silver disc onto a polypropylene rod. The response of the electrode was investigated by measuring electrode potential as a function of pH.The effect of composition of the electrode material (Fe2O3 and oxidized graphite ration) on the electrode response was investigated. The electrode with 40% Fe2O3, 30% graphite and 30% wax by mass was found to give the best potentiometric response. This electrode behaves in Nernstian manner with a potentiometric gradient of 56.6±0.4 mV per unit change in pH at 25?C within the working range of pH 2-9.The electrode was also used for the end-point detection in potentiometric acid-base titrations and found to be an excellent electrode for pH-metric titration. The effect of oxidation of electrode on pH response was investigated by dipping electrode in 0.1N KMnO4, 1:1HNO3 and 0.1N Ce4+ solutions for different interval of time. This treatment of the electrode with oxidizing agents increased the standard electrode potential of the electrode however potential gradient per unit change in pH remains unaltered. Low cost, quick response and easy to prepare are the advantages of the iron oxide - graphite composite electrode as a pH sensor. However some metal ions and oxidising agents interfered in the determination of pH using this electrode which is the limitation of using these electrodes.Scientific World, Vol. 12, No. 12, September 2014, page 44-47


BMC Genomics ◽  
2022 ◽  
Vol 23 (1) ◽  
Author(s):  
Jan Deneweth ◽  
Yves Van de Peer ◽  
Vanessa Vermeirssen

Abstract Background Transposable elements (TE) make up a large portion of many plant genomes and are playing innovative roles in genome evolution. Several TEs can contribute to gene regulation by influencing expression of nearby genes as stress-responsive regulatory motifs. To delineate TE-mediated plant stress regulatory networks, we took a 2-step computational approach consisting of identifying TEs in the proximity of stress-responsive genes, followed by searching for cis-regulatory motifs in these TE sequences and linking them to known regulatory factors. Through a systematic meta-analysis of RNA-seq expression profiles and genome annotations, we investigated the relation between the presence of TE superfamilies upstream, downstream or within introns of nearby genes and the differential expression of these genes in various stress conditions in the TE-poor Arabidopsis thaliana and the TE-rich Solanum lycopersicum. Results We found that stress conditions frequently expressed genes having members of various TE superfamilies in their genomic proximity, such as SINE upon proteotoxic stress and Copia and Gypsy upon heat stress in A. thaliana, and EPRV and hAT upon infection, and Harbinger, LINE and Retrotransposon upon light stress in S. lycopersicum. These stress-specific gene-proximal TEs were mostly located within introns and more detected near upregulated than downregulated genes. Similar stress conditions were often related to the same TE superfamily. Additionally, we detected both novel and known motifs in the sequences of those TEs pointing to regulatory cooption of these TEs upon stress. Next, we constructed the regulatory network of TFs that act through binding these TEs to their target genes upon stress and discovered TE-mediated regulons targeted by TFs such as BRB/BPC, HD, HSF, GATA, NAC, DREB/CBF and MYB factors in Arabidopsis and AP2/ERF/B3, NAC, NF-Y, MYB, CXC and HD factors in tomato. Conclusions Overall, we map TE-mediated plant stress regulatory networks using numerous stress expression profile studies for two contrasting plant species to study the regulatory role TEs play in the response to stress. As TE-mediated gene regulation allows plants to adapt more rapidly to new environmental conditions, this study contributes to the future development of climate-resilient plants.


2020 ◽  
Vol 11 (1) ◽  
Author(s):  
Fanghua Ning ◽  
Biao Li ◽  
Jin Song ◽  
Yuxuan Zuo ◽  
Huaifang Shang ◽  
...  

Abstract Li-rich layered oxide cathode materials show high capacities in lithium-ion batteries owing to the contribution of the oxygen redox reaction. However, structural accommodation of this reaction usually results in O–O dimerization, leading to oxygen release and poor electrochemical performance. In this study, we propose a new structural response mechanism inhibiting O–O dimerization for the oxygen redox reaction by tuning the local symmetry around the oxygen ions. Compared with regular Li2RuO3, the structural response of the as-prepared local-symmetry-tuned Li2RuO3 to the oxygen redox reaction involves the telescopic O–Ru–O configuration rather than O–O dimerization, which inhibits oxygen release, enabling significantly enhanced cycling stability and negligible voltage decay. This discovery of the new structural response mechanism for the oxygen redox reaction will provide a new scope for the strategy of enhancing the anionic redox stability, paving unexplored pathways toward further development of high capacity Li-rich layered oxides.


NANO ◽  
2021 ◽  
pp. 2150093
Author(s):  
Yong Zhang ◽  
Sijie Cheng ◽  
Yanteng Xiao ◽  
Yingte Wang

Willow, a common tree species, is mainly distributed in temperate regions of the Northern Hemisphere. Catkins are the seeds of willow. In addition to propagating new willows, it is of great significance to study its application in other areas. Carbon quantum dots (CQDs) have attracted extensive attention owing to their excellent luminescence properties, low toxicity and water solubility. The use of CQDs for accurate measurement of pH is of great significance in environmental, medical and other fields. Based on this, blue-emission fluorescent CQDs with 4.93% quantum yield (Q.Y.) are prepared via natural product catkins as the only raw material by one-step hydrothermal method. The prepared CQDs exhibit excellent water solubility, narrow particle size distribution, excitation-dependent photoluminescence properties and sensitive pH response behavior. The fluorescence intensity of CQDs has a good linear relationship with pH in the range of 6–12, and the correlation coefficient is 0.994. In addition, the CQDs have good stability, and the response to pH displays excellent reversibility, which can be developed as a pH sensor to quantitatively monitor the pH values in real water samples. Thereby, the potential practical application is promising.


PROTEOMICS ◽  
2009 ◽  
Vol 9 (21) ◽  
pp. 4920-4933 ◽  
Author(s):  
Nora Mörbt ◽  
Iljana Mögel ◽  
Stefan Kalkhof ◽  
Ralph Feltens ◽  
Carmen Röder-Stolinski ◽  
...  

Genes ◽  
2021 ◽  
Vol 12 (10) ◽  
pp. 1588
Author(s):  
Jing Yang ◽  
Zhonglong Guo ◽  
Wentao Wang ◽  
Xiaoyan Cao ◽  
Xiaozeng Yang

SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) transcription factors play critical roles in regulating diverse aspects of plant growth and development, including vegetative phase change, plant architecture, anthocyanin accumulation, lateral root growth, etc. In the present study, 15 SPL genes were identified based on the genome data of Codonopsis pilosula, a well-known medicinal plant. Phylogenetic analysis clustered CpSPLs into eight groups (G1-G8) along with SPLs from Arabidopsis thaliana, Solanum lycopersicum, Oryza sativa and Physcomitrella patens. CpSPLs in the same group share similar gene structure and conserved motif composition. Cis-acting elements responding to light, stress and phytohormone widely exist in their promoter regions. Our qRT-PCR results indicated that 15 CpSPLs were differentially expressed in different tissues (root, stem, leaf, flower and calyx), different developmental periods (1, 2 and 3 months after germination) and various conditions (NaCl, MeJA and ABA treatment). Compared with the control, overexpression of CpSPL2 or CpSPL10 significantly promoted not only the growth of hairy roots, but also the accumulation of total saponins and lobetyolin. Our results established a foundation for further investigation of CpSPLs and provided novel insights into their biological functions. As far as we know, this is the first experimental research on gene function in C. pilosula.


Author(s):  
Maizatul Zolkapli ◽  
Suhairi Saharudin ◽  
Sukreen Hana Herman ◽  
Wan Fazlida Hanim Abdullah

The fabrication and characterization of an optical fiber pH sensor for the detection range 2 – 7 are described. The sensing element was prepared by coating the uncladded middle portion of a multimode plastic clad silica fiber (PCF) with xerogel film of immobilized bromophenol blue (BPB) prepared by a sol-gel process. The exponential decay of the evanescent wave at the core-cladding interface of the multimode fiber was utilized to determine the pH response.  The objective of this work is to analyze the measurement of the fiber optic sensing probe towards various pH level. The intensity of the absorbance was analyzed using statistical technique (Statistical Package for the Social Sciences, SPSS) to identify the significant pH range that can be used as a reference in developing the sensor instrumentation in the future. pH2 shows the highest significance among all pH values based on the statistical results using error plots.


2004 ◽  
Author(s):  
David A. Christopher ◽  
Avihai Danon

Original Objectives: 1. Purify and biochemically characterize RB60 orthologs in higher plant chloroplasts; 2. Clone the gene(s) encoding plant RB60 orthologs and determine their structure and expression; 3. Manipulate the expression of RB60; 4. Assay the effects of altered RB60 expression on thylakoid biogenesis and photosynthetic function in plants exposed to different light conditions. In addition, we also examined the gene structure and expression of RB60 orthologs in the non-vascular plant, Physcomitrella patens and cloned the poly(A)-binding protein orthologue (43 kDa RB47-like protein). This protein is believed to a partner that interacts with RB60 to bind to the psbA5' UTR. Thus, to obtain a comprehensive view of RB60 function requires analysis of its biochemical partners such as RB43. Background & Achievements: High levels of sunlight reduce photosynthesis in plants by damaging the photo system II reaction center (PSII) subunits, such as D1 (encoded by the chloroplast tpsbAgene). When the rate of D1 synthesis is less than the rate of photo damage, photo inhibition occurs and plant growth is decreased. Plants use light-activated translation and enhanced psbAmRNA stability to maintain D1 synthesis and replace the photo damaged 01. Despite the importance to photosynthetic capacity, these mechanisms are poorly understood in plants. One intriguing model derived from the algal chloroplast system, Chlamydomonas, implicates the role of three proteins (RB60, RB47, RB38) that bind to the psbAmRNA 5' untranslated leader (5' UTR) in the light to activate translation or enhance mRNA stability. RB60 is the key enzyme, protein D1sulfide isomerase (Pill), that regulates the psbA-RN :Binding proteins (RB's) by way of light-mediated redox potentials generated by the photosystems. However, proteins with these functions have not been described from higher plants. We provided compelling evidence for the existence of RB60, RB47 and RB38 orthologs in the vascular plant, Arabidopsis. Using gel mobility shift, Rnase protection and UV-crosslinking assays, we have shown that a dithiol redox mechanism which resembles a Pill (RB60) activity regulates the interaction of 43- and 30-kDa proteins with a thermolabile stem-loop in the 5' UTR of the psbAmRNA from Arabidopsis. We discovered, in Arabidopsis, the PD1 gene family consists of II members that differ in polypeptide length from 361 to 566 amino acids, presence of signal peptides, KDEL motifs, and the number and positions of thioredoxin domains. PD1's catalyze the reversible formation an disomerization of disulfide bonds necessary for the proper folding, assembly, activity, and secretion of numerous enzymes and structural proteins. PD1's have also evolved novel cellular redox functions, as single enzymes and as subunits of protein complexes in organelles. We provide evidence that at least one Pill is localized to the chloroplast. We have used PDI-specific polyclonal and monoclonal antisera to characterize the PD1 (55 kDa) in the chloroplast that is unevenly distributed between the stroma and pellet (containing membranes, DNA, polysomes, starch), being three-fold more abundant in the pellet phase. PD1-55 levels increase with light intensity and it assembles into a high molecular weight complex of ~230 kDa as determined on native blue gels. In vitro translation of all 11 different Pill's followed by microsomal membrane processing reactions were used to differentiate among PD1's localized in the endoplasmic reticulum or other organelles. These results will provide.1e insights into redox regulatory mechanisms involved in adaptation of the photosynthetic apparatus to light stress. Elucidating the genetic mechanisms and factors regulating chloroplast photosynthetic genes is important for developing strategies to improve photosynthetic efficiency, crop productivity and adaptation to high light environments.  


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