scholarly journals Identification of C. elegans strains using a fully convolutional neural network on behavioural dynamics

2018 ◽  
Author(s):  
Avelino Javer ◽  
André E.X. Brown ◽  
Iasonas Kokkinos ◽  
Jens Rittscher
Keyword(s):  
Neural Network ◽  
Time Series ◽  
Deep Learning ◽  
Convolutional Neural Network ◽  
Spontaneous Activity ◽  
Genetic Basis ◽  
Model Organism ◽  
C Elegans ◽  
Deep Learning Model ◽  
Behavioural Dynamics

AbstractThe nematode C. elegans is a promising model organism to understand the genetic basis of behaviour due to its anatomical simplicity. In this work, we present a deep learning model capable of discerning genetically diverse strains based only on their recorded spontaneous activity, and explore how its performance changes as different embeddings are used as input. The model outperforms hand-crafted features on strain classification when trained directly on time series of worm postures.

scholarly journals Ensemble Empirical Mode Decomposition with Adaptive Noise with Convolution Based Gated Recurrent Neural Network: A New Deep Learning Model for South Asian High Intensity Forecasting

Symmetry ◽  
2021 ◽  
Vol 13 (6) ◽  
pp. 931
Author(s):  
Kecheng Peng ◽  
Xiaoqun Cao ◽  
Bainian Liu ◽  
Yanan Guo ◽  
Wenlong Tian
Keyword(s):  
Neural Network ◽  
Time Series ◽  
Deep Learning ◽  
South Asian ◽  
Recurrent Neural Network ◽  
Ensemble Empirical Mode Decomposition ◽  
South Asian High ◽  
Mode Decomposition ◽  
Adaptive Noise ◽  
Deep Learning Model

The intensity variation of the South Asian high (SAH) plays an important role in the formation and extinction of many kinds of mesoscale systems, including tropical cyclones, southwest vortices in the Asian summer monsoon (ASM) region, and the precipitation in the whole Asia Europe region, and the SAH has a vortex symmetrical structure; its dynamic field also has the symmetry form. Not enough previous studies focus on the variation of SAH daily intensity. The purpose of this study is to establish a day-to-day prediction model of the SAH intensity, which can accurately predict not only the interannual variation but also the day-to-day variation of the SAH. Focusing on the summer period when the SAH is the strongest, this paper selects the geopotential height data between 1948 and 2020 from NCEP to construct the SAH intensity datasets. Compared with the classical deep learning methods of various kinds of efficient time series prediction model, we ultimately combine the Ensemble Empirical Mode Decomposition with Adaptive Noise (CEEMDAN) method, which has the ability to deal with the nonlinear and unstable single system, with the Permutation Entropy (PE) method, which can extract the SAH intensity feature of IMF decomposed by CEEMDAN, and the Convolution-based Gated Recurrent Neural Network (ConvGRU) model is used to train, test, and predict the intensity of the SAH. The prediction results show that the combination of CEEMDAN and ConvGRU can have a higher accuracy and more stable prediction ability than the traditional deep learning model. After removing the redundant features in the time series, the prediction accuracy of the SAH intensity is higher than that of the classical model, which proves that the method has good applicability for the prediction of nonlinear systems in the atmosphere.

scholarly journals Method for Mapping Rice Fields in Complex Landscape Areas Based on Pre-Trained Convolutional Neural Network from HJ-1 A/B Data

2018 ◽  
Vol 7 (11) ◽  
pp. 418 ◽  
Author(s):  
Tian Jiang ◽  
Xiangnan Liu ◽  
Ling Wu
Keyword(s):  
Neural Network ◽  
Remote Sensing ◽  
Time Series ◽  
Deep Learning ◽  
Convolutional Neural Network ◽  
Vegetation Index ◽  
Southern China ◽  
Series Data ◽  
Support Vector ◽  
Complex Landscape

Accurate and timely information about rice planting areas is essential for crop yield estimation, global climate change and agricultural resource management. In this study, we present a novel pixel-level classification approach that uses convolutional neural network (CNN) model to extract the features of enhanced vegetation index (EVI) time series curve for classification. The goal is to explore the practicability of deep learning techniques for rice recognition in complex landscape regions, where rice is easily confused with the surroundings, by using mid-resolution remote sensing images. A transfer learning strategy is utilized to fine tune a pre-trained CNN model and obtain the temporal features of the EVI curve. Support vector machine (SVM), a traditional machine learning approach, is also implemented in the experiment. Finally, we evaluate the accuracy of the two models. Results show that our model performs better than SVM, with the overall accuracies being 93.60% and 91.05%, respectively. Therefore, this technique is appropriate for estimating rice planting areas in southern China on the basis of a pre-trained CNN model by using time series data. And more opportunity and potential can be found for crop classification by remote sensing and deep learning technique in the future study.

Outlier Detection Using Convolutional Neural Network for Wireless Sensor Network

2021 ◽  
Vol 17 (2) ◽  
pp. 0-0
Keyword(s):  
Neural Network ◽  
Time Series ◽  
Deep Learning ◽  
Wireless Sensor Network ◽  
Convolutional Neural Network ◽  
Sensor Network ◽  
Time Series Data ◽  
Wireless Sensor ◽  
Series Data ◽  
Detection Accuracy

Over the recent years, the term deep learning has been considered as one of the primary choice for handling huge amount of data. Having deeper hidden layers, it surpasses classical methods for detection of outlier in wireless sensor network. The Convolutional Neural Network (CNN) is a biologically inspired computational model which is one of the most popular deep learning approaches. It comprises neurons that self-optimize through learning. EEG generally known as Electroencephalography is a tool used for investigation of brain function and EEG signal gives time-series data as output. In this paper, we propose a state-of-the-art technique designed by processing the time-series data generated by the sensor nodes stored in a large dataset into discrete one-second frames and these frames are projected onto a 2D map images. A convolutional neural network (CNN) is then trained to classify these frames. The result improves detection accuracy and encouraging.

Dental Caries Classification System Using Deep Learning Based Convolutional Neural Network

2020 ◽  
Vol 17 (9) ◽  
pp. 4660-4665
Author(s):  
L. Megalan Leo ◽  
T. Kalpalatha Reddy
Keyword(s):  
Neural Network ◽  
Deep Learning ◽  
Dental Caries ◽  
Convolutional Neural Network ◽  
Median Filter ◽  
Activation Function ◽  
Radiographic Examination ◽  
Testing Dataset ◽  
The People ◽  
Deep Learning Model

In the modern times, Dental caries is one of the most prevalent diseases of the teeth in the whole world. Almost 90% of the people get affected by cavity. Dental caries is the cavity which occurs due to the remnant food and bacteria. Dental Caries are curable and preventable diseases when it is identified at earlier stage. Dentist uses the radiographic examination in addition with visual tactile inspection to identify the caries. Dentist finds difficult to identify the occlusal, pit and fissure caries. It may lead to sever problem if the cavity left untreated and not identified at the earliest stage. Machine learning can be applied to solve this issue by applying the labelled dataset given by the experienced dentist. In this paper, convolutional based deep learning method is applied to identify the cavity presence in the image. 480 Bite viewing radiography images are collected from the Elsevier standard database. All the input images are resized to 128–128 matrixes. In preprocessing, selective median filter is used to reduce the noise in the image. Pre-processed inputs are given to deep learning model where convolutional neural network with Google Net inception v3 architecture algorithm is implemented. ReLu activation function is used with Google Net to identify the caries that provide the dentists with the precise and optimized results about caries and the area affected. Proposed technique achieves 86.7% accuracy on the testing dataset.

scholarly journals A robust and interpretable, end-to-end deep learning model for cytometry data

2020 ◽  
Author(s):  
Zicheng Hu ◽  
Alice Tang ◽  
Jaiveer Singh ◽  
Sanchita Bhattacharya ◽  
Atul J. Butte
Keyword(s):  
Neural Network ◽  
Deep Learning ◽  
Convolutional Neural Network ◽  
Network Model ◽  
Neural Network Model ◽  
Learning Model ◽  
Deep Convolutional Neural Network ◽  
Significant Information ◽  
End To End ◽  
Deep Learning Model

AbstractCytometry technologies are essential tools for immunology research, providing high-throughput measurements of the immune cells at the single-cell level. Traditional approaches in interpreting and using cytometry measurements include manual or automated gating to identify cell subsets from the cytometry data, providing highly intuitive results but may lead to significant information loss, in that additional details in measured or correlated cell signals might be missed. In this study, we propose and test a deep convolutional neural network for analyzing cytometry data in an end-to-end fashion, allowing a direct association between raw cytometry data and the clinical outcome of interest. Using nine large CyTOF studies from the open-access ImmPort database, we demonstrated that the deep convolutional neural network model can accurately diagnose the latent cytomegalovirus (CMV) in healthy individuals, even when using highly heterogeneous data from different studies. In addition, we developed a permutation-based method for interpreting the deep convolutional neural network model and identified a CD27-CD94+ CD8+ T cell population significantly associated with latent CMV infection. Finally, we provide a tutorial for creating, training and interpreting the tailored deep learning model for cytometry data using Keras and TensorFlow (github.com/hzc363/DeepLearningCyTOF).

scholarly journals Devanagari Handwritten Character Recognition Using Deep Learning

2022 ◽  
Vol 10 (1) ◽  
pp. 102-105
Author(s):  
Kannuru Padmaja
Keyword(s):  
Neural Network ◽  
Deep Learning ◽  
Convolutional Neural Network ◽  
Character Recognition ◽  
Automation System ◽  
Handwritten Character Recognition ◽  
Image Processing Techniques ◽  
Handwritten Character ◽  
Processing Techniques ◽  
Deep Learning Model

Abstract: In this paper, we present the implementation of Devanagari handwritten character recognition using deep learning. Hand written character recognition gaining more importance due to its major contribution in automation system. Devanagari script is one of various languages script in India. It consists of 12 vowels and 36 consonants. Here we implemented the deep learning model to recognize the characters. The character recognition mainly five steps: pre-processing, segmentation, feature extraction, prediction, post-processing. The model will use convolutional neural network to train the model and image processing techniques to use the character recognition and predict the accuracy of rcognition. Keywords: convolutional neural network, character recognition, Devanagari script, deep learning.

scholarly journals Light Actuation Based On Facial Mood Recognition

2020 ◽  
Vol 9 (05) ◽  
pp. 25052-25056
Author(s):  
Abhi Kadam ◽  
Anupama Mhatre ◽  
Sayali Redasani ◽  
Amit Nerurkar
Keyword(s):  
Neural Network ◽  
Deep Learning ◽  
Convolutional Neural Network ◽  
Well Being ◽  
Training Data ◽  
Facial Emotion ◽  
Specific Data ◽  
Affective Meaning ◽  
Deep Learning Model ◽  
And Training

Current lighting technologies extend the options for changing the appearance of rooms and closed spaces, as such creating ambiences with an affective meaning. Using intelligence, these ambiences may instantly be adapted to the needs of the room’s occupant(s), possibly improving their well-being. In this paper, we set actuate lighting in our surrounding using mood detection. We analyze the mood of the person by Facial Emotion Recognition using deep learning model such as Convolutional Neural Network (CNN). On recognizing this emotion, we will actuate lighting in our surrounding in accordance with the mood. Based on implementation results, the system needs to be developed further by adding more specific data class and training data.

Well Connectivity Analysis with Deep Learning

2021 ◽  
Author(s):  
Yuanjun Li ◽  
Satomi Suzuki ◽  
Roland Horne
Keyword(s):  
Neural Network ◽  
Time Series ◽  
Deep Learning ◽  
False Negative ◽  
Signal Propagation ◽  
Learning Model ◽  
Short Term ◽  
Production Wells ◽  
Interference Tests ◽  
Deep Learning Model

Abstract Knowledge of well connectivity in a reservoir is crucial, especially for early-stage field development and water injection management. However, traditional interference tests can often take several weeks or even longer depending on the distance between wells and the hydraulic diffusivity of the reservoir. Therefore, instead of physically shutting in production wells, we can take advantage of deep learning methods to perform virtual interference tests. In this study, we first used the historical field data to train the deep learning model, a modified Long- and Short-term Time-series network (LSTNet). This model combines the Convolution Neural Network (CNN) to extract short-term local dependency patterns, the Recurrent Neural Network (RNN) to discover long-term patterns for time series trends, and a traditional autoregressive model to alleviate the scale insensitive problem. To address the time-lag issue in signal propagation, we employed a skip-recurrent structure that extends the existing RNN structure by connecting a current state with a previous state when the flow rate signal from an adjacent well starts to impact the observation well. In addition, we found that wells connected to the same manifold usually have similar liquid production patterns, which can lead to false causation of subsurface pressure communication. Thus we enhanced the model performance by using external feature differences to remove the surface connection in the data, thereby reducing input similarity. This enhancement can also amplify the weak signal and thus distinguish input signals. To examine the deep learning model, we used the datasets generated from Norne Field with two different geological settings: sealing and nonsealing cases. The production wells are placed at two sides of the fault to test the false-negative prediction. With these improvements and with parameter tuning, the modified LSTNet model could successfully indicate the well connectivity for the nonsealing cases and reveal the sealing structures in the sealing cases based on the historical data. The deep learning method we employed in this work can predict well pressure without using hand-crafted features, which are usually formed based on flow patterns and geological settings. Thus, this method should be applicable to general cases and more intuitive. Furthermore, this virtual interference test with a deep learning framework can avoid production loss.

scholarly journals Identification Method of Wheat Cultivars by Using a Convolutional Neural Network Combined with Images of Multiple Growth Periods of Wheat

Symmetry ◽  
2021 ◽  
Vol 13 (11) ◽  
pp. 2012
Author(s):  
Jiameng Gao ◽  
Chengzhong Liu ◽  
Junying Han ◽  
Qinglin Lu ◽  
Hengxing Wang ◽  
...  
Keyword(s):  
Neural Network ◽  
Machine Learning ◽  
Deep Learning ◽  
Convolutional Neural Network ◽  
Wheat Variety ◽  
Learning Model ◽  
Wheat Cultivars ◽  
Learning Methods ◽  
Wheat Varieties ◽  
Deep Learning Model

Wheat is a very important food crop for mankind. Many new varieties are bred every year. The accurate judgment of wheat varieties can promote the development of the wheat industry and the protection of breeding property rights. Although gene analysis technology can be used to accurately determine wheat varieties, it is costly, time-consuming, and inconvenient. Traditional machine learning methods can significantly reduce the cost and time of wheat cultivars identification, but the accuracy is not high. In recent years, the relatively popular deep learning methods have further improved the accuracy on the basis of traditional machine learning, whereas it is quite difficult to continue to improve the identification accuracy after the convergence of the deep learning model. Based on the ResNet and SENet models, this paper draws on the idea of the bagging-based ensemble estimator algorithm, and proposes a deep learning model for wheat classification, CMPNet, which is coupled with the tillering period, flowering period, and seed image. This convolutional neural network (CNN) model has a symmetrical structure along the direction of the tensor flow. The model uses collected images of different types of wheat in multiple growth periods. First, it uses the transfer learning method of the ResNet-50, SE-ResNet, and SE-ResNeXt models, and then trains the collected images of 30 kinds of wheat in different growth periods. It then uses the concat layer to connect the output layers of the three models, and finally obtains the wheat classification results through the softmax function. The accuracy of wheat variety identification increased from 92.07% at the seed stage, 95.16% at the tillering stage, and 97.38% at the flowering stage to 99.51%. The model’s single inference time was only 0.0212 s. The model not only significantly improves the classification accuracy of wheat varieties, but also achieves low cost and high efficiency, which makes it a novel and important technology reference for wheat producers, managers, and law enforcement supervisors in the practice of wheat production.

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