scholarly journals Shear stress mediates metabolism and growth in electroactive biofilms

2018 ◽  
Author(s):  
A-Andrew D Jones ◽  
Cullen R Buie

Electroactive bacteria such asGeobacter sulfurreducensandShewanella onedensisproduce electrical current during their respiration; this has been exploited in bioelectrochemical systems. These bacteria form thicker biofilms and stay more active than soluble-respiring bacteria biofilms because their electron acceptor is always accessible. In bioelectrochemical systems such as microbial fuel cells, corrosion-resistant metals uptake current from the bacteria, producing power. While beneficial for engineering applications, collecting current using corrosion resistant metals induces pH stress in the biofilm, unlike the naturally occurring process where a reduced metal combines with protons released during respiration. To reduce pH stress, some bioelectrochemical systems use forced convection to enhance mass transport of both nutrients and byproducts; however, biofilms’ small pore size limits convective transport, thus, reducing pH stress in these systems remains a challenge. Understanding how convection is necessary but not sufficient for maintaining biofilm health requires decoupling mass transport from momentum transport (i.e. fluidic shear stress). In this study we use a rotating disc electrode to emulate a practical bioelectrochemical system, while decoupling mass transport from shear stress. This is the first study to isolate the metabolic and structural changes in electroactive biofilms due to shear stress. We find that increased shear stress reduces biofilm development time while increasing its metabolic rate. Furthermore, we find biofilm health is negatively affected by higher metabolic rates over long-term growth due to the biofilm’s memory of the fluid flow conditions during the initial biofilm development phases. These results not only provide guidelines for improving performance of bioelectrochemical systems, but also reveal features of biofilm behavior. Results of this study suggest that optimized reactors may initiate operation at high shear to decrease development time before decreasing shear for steady-state operation. Furthermore, this biofilm memory discovered will help explain the presence of channels within biofilms observed in other studies.

2006 ◽  
Vol 258-260 ◽  
pp. 586-591
Author(s):  
António Martins ◽  
Paulo Laranjeira ◽  
Madalena Dias ◽  
José Lopes

In this work the application of delay differential equations to the modelling of mass transport in porous media, where the convective transport of mass, is presented and discussed. The differences and advantages when compared with the Dispersion Model are highlighted. Using simplified models of the local structure of a porous media, in particular a network model made up by combining two different types of network elements, channels and chambers, the mass transport under transient conditions is described and related to the local geometrical characteristics. The delay differential equations system that describe the flow, arise from the combination of the mass balance equations for both the network elements, and after taking into account their flow characteristics. The solution is obtained using a time marching method, and the results show that the model is capable of describing the qualitative behaviour observed experimentally, allowing the analysis of the influence of the local geometrical and flow field characteristics on the mass transport.


Lab on a Chip ◽  
2017 ◽  
Vol 17 (10) ◽  
pp. 1778-1792 ◽  
Author(s):  
Shang Song ◽  
Charles Blaha ◽  
Willieford Moses ◽  
Jaehyun Park ◽  
Nathan Wright ◽  
...  

The SNM-based iBAP demonstrates viability and functionality at clinically relevant cell density and hemocompatibility under convective transport in a porcine model.


2011 ◽  
Vol 133 (4) ◽  
Author(s):  
Jonathan P. Vande Geest ◽  
B. R. Simon ◽  
Paul H. Rigby ◽  
Tyler P. Newberg

Finite element models (FEMs) including characteristic large deformations in highly nonlinear materials (hyperelasticity and coupled diffusive/convective transport of neutral mobile species) will allow quantitative study of in vivo tissues. Such FEMs will provide basic understanding of normal and pathological tissue responses and lead to optimization of local drug delivery strategies. We present a coupled porohyperelastic mass transport (PHEXPT) finite element approach developed using a commercially available ABAQUS finite element software. The PHEXPT transient simulations are based on sequential solution of the porohyperelastic (PHE) and mass transport (XPT) problems where an Eulerian PHE FEM is coupled to a Lagrangian XPT FEM using a custom-written FORTRAN program. The PHEXPT theoretical background is derived in the context of porous media transport theory and extended to ABAQUS finite element formulations. The essential assumptions needed in order to use ABAQUS are clearly identified in the derivation. Representative benchmark finite element simulations are provided along with analytical solutions (when appropriate). These simulations demonstrate the differences in transient and steady state responses including finite deformations, total stress, fluid pressure, relative fluid, and mobile species flux. A detailed description of important model considerations (e.g., material property functions and jump discontinuities at material interfaces) is also presented in the context of finite deformations. The ABAQUS-based PHEXPT approach enables the use of the available ABAQUS capabilities (interactive FEM mesh generation, finite element libraries, nonlinear material laws, pre- and postprocessing, etc.). PHEXPT FEMs can be used to simulate the transport of a relatively large neutral species (negligible osmotic fluid flux) in highly deformable hydrated soft tissues and tissue-engineered materials.


2005 ◽  
Vol 128 (2) ◽  
pp. 185-193 ◽  
Author(s):  
Yan Zeng ◽  
Thong-See Lee ◽  
Peng Yu ◽  
Partha Roy ◽  
Hong-Tong Low

Microchannel bioreactors have been used in many studies to manipulate and investigate the fluid microenvironment around cells. In this study, substrate concentrations and shear stresses at the base were computed from a three-dimensional numerical flow-model incorporating mass transport. Combined dimensionless parameters were developed from a simplified analysis. The numerical results of substrate concentration were well correlated by the combined parameters. The generalized results may find applications in design analysis of microchannel bioreactors. The mass transport and shear stress were related in a generalized result. Based on the generalized results and the condition of dynamic similarity, various means to isolate their respective effects on cells were considered.


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