scholarly journals npphen: an R-package for non-parametric reconstruction of vegetation phenology and anomaly detection using remote sensing

2018 ◽  
Author(s):  
Sergio A. Estay ◽  
Roberto O. Chávez
Keyword(s):  
Remote Sensing ◽  
Anomaly Detection ◽  
Land Surface ◽  
Relevant Information ◽  
R Package ◽  
Plant Ecology ◽  
Essential Biodiversity Variables ◽  
Cost Efficient ◽  
High Level ◽  
Non Parametric

AbstractFor ecologists, the challenge at using remote sensing tools is to convert spectral data into ecologically relevant information like abundance, productivity or traits distribution. Among these features, plant phenology is one of the most used variables in any study applying remote sensing to plant ecology and it has formally considered as one of the Essential Biodiversity Variables. Currently, satellite imagery make possible cost-efficient monitoring of land surface phenology (LSP), but methods applicable to different ecosystems are not available. Here, we introduce the ‘npphen’ R-package developed for remote sensing LSP reconstruction and anomaly detection using non-parametric techniques. The package implements basic and high-level functions for manipulating vector and raster data to obtain high resolution spatial and temporal LSP reconstructions. Advantages of ‘npphen’ are: its flexibility to describe any LSP pattern (suitable for any ecosystem), it handles time series or raster stacks with and without gaps, and it provides confidence interval for the expected LSP at yearly basis, useful to judge anomaly magnitudes. We present two study cases to show how ‘npphen’ can successfully reconstruct and map LSP and anomalies for contrasting ecosystems.

Bayesian Spatio-temporal Geostatistics-based Method for Multiple Satellite Products Fusion and Downscaling

2020 ◽  
Author(s):  
Yanchen Bo
Keyword(s):  
Remote Sensing ◽  
Soil Moisture ◽  
Spatial Resolution ◽  
Land Surface ◽  
Satellite Remote Sensing ◽  
Hydrological Cycle ◽  
Microwave Remote Sensing ◽  
Earth Surface ◽  
Spatio Temporal ◽  
High Level

<p>High-level satellite remote sensing products of Earth surface play an irreplaceable role in global climate change, hydrological cycle modeling and water resources management, environment monitoring and assessment. Earth surface high-level remote sensing products released by NASA, ESA and other agencies are routinely derived from any single remote sensor. Due to the cloud contamination and limitations of retrieval algorithms, the remote sensing products derived from single remote senor are suspected to the incompleteness, low accuracy and less consistency in space and time. Some land surface remote sensing products, such as soil moisture products derived from passive microwave remote sensing data have too coarse spatial resolution to be applied at local scale. Fusion and downscaling is an effective way of improving the quality of satellite remote sensing products.</p><p>We developed a Bayesian spatio-temporal geostatistics-based framework for multiple remote sensing products fusion and downscaling. Compared to the existing methods, the presented method has 2 major advantages. The first is that the method was developed in the Bayesian paradigm, so the uncertainties of the multiple remote sensing products being fused or downscaled could be quantified and explicitly expressed in the fusion and downscaling algorithms. The second advantage is that the spatio-temporal autocorrelation is exploited in the fusion approach so that more complete products could be produced by geostatistical estimation.</p><p>This method has been applied to the fusion of multiple satellite AOD products, multiple satellite SST products, multiple satellite LST products and downscaling of 25 km spatial resolution soil moisture products. The results were evaluated in both spatio-temporal completeness and accuracy.</p>

Developing Land-surface Evapotranspiration Remote Sensing Monitoring System Using the Component Technology

2011 ◽  
Vol 13 (5) ◽  
pp. 679-686
Author(s):  
Zhiqi QIAN ◽  
Youjing ZHANG ◽  
Shizan DENG ◽  
Yingying FANG ◽  
Chen CHEN
Keyword(s):  
Remote Sensing ◽  
Monitoring System ◽  
Land Surface ◽  
Component Technology ◽  
Remote Sensing Monitoring

Impact of LULC Changes on LST in Rajshahi District of Bangladesh: A Remote Sensing Approach

2020 ◽  
Vol 3 (1) ◽  
pp. 11-23 ◽  
Author(s):  
Abdulla Al Kafy ◽  
Abdullah Al-Faisal ◽  
Mohammad Mahmudul Hasan ◽  
Md. Soumik Sikdar ◽  
Mohammad Hasib Hasan Khan ◽  
...  
Keyword(s):  
Remote Sensing ◽  
Surface Temperature ◽  
Land Surface ◽  
Agricultural Land ◽  
Global Climate ◽  
Urban Expansion ◽  
Water Bodies ◽  
Landsat 8 ◽  
Lulc Changes ◽  
The Impact

Urbanization has been contributing more in global climate warming, with more than 50% of the population living in cities. Rapid population growth and change in land use / land cover (LULC) are closely linked. The transformation of LULC due to rapid urban expansion significantly affects the functions of biodiversity and ecosystems, as well as local and regional climates. Improper planning and uncontrolled management of LULC changes profoundly contribute to the rise of urban land surface temperature (LST). This study evaluates the impact of LULC changes on LST for 1997, 2007 and 2017 in the Rajshahi district (Bangladesh) using multi-temporal and multi-spectral Landsat 8 OLI and Landsat 5 TM satellite data sets. The analysis of LULC changes exposed a remarkable increase in the built-up areas and a significant decrease in the vegetation and agricultural land. The built-up area was increased almost double in last 20 years in the study area. The distribution of changes in LST shows that built-up areas recorded the highest temperature followed by bare land, vegetation and agricultural land and water bodies. The LULC-LST profiles also revealed the highest temperature in built-up areas and the lowest temperature in water bodies. In the last 20 years, LST was increased about 13ºC. The study demonstrates decrease in vegetation cover and increase in non-evaporating surfaces with significantly increases the surface temperature in the study area. Remote-sensing techniques were found one of the suitable techniques for rapid analysis of urban expansions and to identify the impact of urbanization on LST.

Remote Sensing Based Assessment of Agricultural Droughts in Sub-Watersheds of Upper Bhima Basin, India

2019 ◽  
Vol 2 (2) ◽  
pp. 105-111 ◽  
Author(s):  
Nayan Zagade ◽  
Ajaykumar Kadam ◽  
Bhavana Umrikar ◽  
Bhagyashri Maggirwar
Keyword(s):  
Remote Sensing ◽  
Land Surface Temperature ◽  
Land Surface ◽  
Agricultural Sector ◽  
Health Index ◽  
Drought Assessment ◽  
Drought Conditions ◽  
Moderate Resolution ◽  
Resolution Imaging ◽  
Vegetation Health Index

Drought assessment for agricultural sector is vital in order to deal with the water scarcity in Ahmednagar and Pune districts, particularly in sub-watersheds of upper catchment of the River Bhima. Moderate Resolution Imaging Spectro-radiometer (MODIS) satellite data (2000, 2002, 2009, 2014, 2015 and 2017) for the years receiving less rainfall have been procured and various indices were computed to understand the intensity of agricultural droughts in the area. Vegetation health index (VHI) is computed on the basis of vegetation moisture, vegetation condition and land surface temperature condition. Most of the reviewed area shows moderate to extreme drought conditions.

scholarly journals NoRCE: non-coding RNA sets cis enrichment tool

2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Gulden Olgun ◽  
Afshan Nabi ◽  
Oznur Tastan
Keyword(s):  
Expression Patterns ◽  
Target Prediction ◽  
Enrichment Analysis ◽  
Fruit Fly ◽  
Relevant Information ◽  
R Package ◽  
Data Repository ◽  
Biologically Relevant ◽  
Gene Sets ◽  
Data Files

Abstract Background While some non-coding RNAs (ncRNAs) are assigned critical regulatory roles, most remain functionally uncharacterized. This presents a challenge whenever an interesting set of ncRNAs needs to be analyzed in a functional context. Transcripts located close-by on the genome are often regulated together. This genomic proximity on the sequence can hint at a functional association. Results We present a tool, NoRCE, that performs cis enrichment analysis for a given set of ncRNAs. Enrichment is carried out using the functional annotations of the coding genes located proximal to the input ncRNAs. Other biologically relevant information such as topologically associating domain (TAD) boundaries, co-expression patterns, and miRNA target prediction information can be incorporated to conduct a richer enrichment analysis. To this end, NoRCE includes several relevant datasets as part of its data repository, including cell-line specific TAD boundaries, functional gene sets, and expression data for coding & ncRNAs specific to cancer. Additionally, the users can utilize custom data files in their investigation. Enrichment results can be retrieved in a tabular format or visualized in several different ways. NoRCE is currently available for the following species: human, mouse, rat, zebrafish, fruit fly, worm, and yeast. Conclusions NoRCE is a platform-independent, user-friendly, comprehensive R package that can be used to gain insight into the functional importance of a list of ncRNAs of any type. The tool offers flexibility to conduct the users’ preferred set of analyses by designing their own pipeline of analysis. NoRCE is available in Bioconductor and https://github.com/guldenolgun/NoRCE.

scholarly journals Assessment of High Resolution Air Temperature Fields at Rocky Mountain National Park by Combining Scarce Point Measurements with Elevation and Remote Sensing Data

2020 ◽  
Vol 13 (1) ◽  
pp. 113
Author(s):  
Antonio-Juan Collados-Lara ◽  
Steven R. Fassnacht ◽  
Eulogio Pardo-Igúzquiza ◽  
David Pulido-Velazquez
Keyword(s):  
Remote Sensing ◽  
High Resolution ◽  
Air Temperature ◽  
Land Surface ◽  
National Park ◽  
Rocky Mountain ◽  
Rocky Mountain National Park ◽  
Temperature Fields ◽  
Lapse Rate ◽  
Validation Experiment

There is necessity of considering air temperature to simulate the hydrology and management within water resources systems. In many cases, a big issue is considering the scarcity of data due to poor accessibility and limited funds. This paper proposes a methodology to obtain high resolution air temperature fields by combining scarce point measurements with elevation data and land surface temperature (LST) data from remote sensing. The available station data (SNOTEL stations) are sparse at Rocky Mountain National Park, necessitating the inclusion of correlated and well-sampled variables to assess the spatial variability of air temperature. Different geostatistical approaches and weighted solutions thereof were employed to obtain air temperature fields. These estimates were compared with two relatively direct solutions, the LST (MODIS) and a lapse rate-based interpolation technique. The methodology was evaluated using data from different seasons. The performance of the techniques was assessed through a cross validation experiment. In both cases, the weighted kriging with external drift solution (considering LST and elevation) showed the best results, with a mean squared error of 3.7 and 3.6 °C2 for the application and validation, respectively.

Semantic Relation Model and Dataset for Remote Sensing Scene Understanding

2021 ◽  
Vol 10 (7) ◽  
pp. 488
Author(s):  
Peng Li ◽  
Dezheng Zhang ◽  
Aziguli Wulamu ◽  
Xin Liu ◽  
Peng Chen
Keyword(s):  
Remote Sensing ◽  
Scene Understanding ◽  
Deep Understanding ◽  
Remote Sensing Images ◽  
Convolutional Network ◽  
Scene Graph ◽  
Multi Scale ◽  
Relationship Extraction ◽  
High Level ◽  
Graph Generation

A deep understanding of our visual world is more than an isolated perception on a series of objects, and the relationships between them also contain rich semantic information. Especially for those satellite remote sensing images, the span is so large that the various objects are always of different sizes and complex spatial compositions. Therefore, the recognition of semantic relations is conducive to strengthen the understanding of remote sensing scenes. In this paper, we propose a novel multi-scale semantic fusion network (MSFN). In this framework, dilated convolution is introduced into a graph convolutional network (GCN) based on an attentional mechanism to fuse and refine multi-scale semantic context, which is crucial to strengthen the cognitive ability of our model Besides, based on the mapping between visual features and semantic embeddings, we design a sparse relationship extraction module to remove meaningless connections among entities and improve the efficiency of scene graph generation. Meanwhile, to further promote the research of scene understanding in remote sensing field, this paper also proposes a remote sensing scene graph dataset (RSSGD). We carry out extensive experiments and the results show that our model significantly outperforms previous methods on scene graph generation. In addition, RSSGD effectively bridges the huge semantic gap between low-level perception and high-level cognition of remote sensing images.

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