scholarly journals Network hubs in root-associated fungal metacommunities

2018 ◽  
Author(s):  
Hirokazu Toju ◽  
Akifumi S. Tanabe ◽  
Hirotoshi Sato
Keyword(s):  
Plant Species ◽  
Mycorrhizal Fungi ◽  
Arbuscular Mycorrhizal ◽  
Pathogenic Fungi ◽  
Pathogen Resistance ◽  
Climatic Region ◽  
Sequencing Data ◽  
Functional Roles ◽  
Scale Network ◽  
The Japanese Archipelago

AbstractBackgroundAlthough a number of recent studies have uncovered remarkable diversity of microbes associated with plants, understanding and managing dynamics of plant microbiomes remain major scientific challenges. In this respect, network analytical methods have provided a basis for exploring “hub” microbial species, which potentially organize community-scale processes of plant-microbe interactions.MethodsBy compiling Illumina sequencing data of root-associated fungi in eight forest ecosystems across the Japanese Archipelago, we explored hubs within “metacommunity-scale” networks of plant-fungus associations. In total, the metadata included 8,080 fungal operational taxonomic units (OTUs) detected from 227 local populations of 150 plant species/taxa.ResultsFew fungal OTUs were common across all the eight forests. However, in each metacommunity-scale network representing northern four localities or southern four localities, diverse mycorrhizal, endophytic, and pathogenic fungi were classified as “metacommunity hubs”, which were detected from diverse host plant taxa throughout a climatic region. Specifically, Mortierella (Mortierellales), Cladophialophora (Chaetothyriales), Ilyonectria (Hypocreales), Pezicula (Helotiales), and Cadophora (incertae sedis) had broad geographic and host ranges across the northern (cool-temperate) region, while Saitozyma/Cryptococcus (Tremellales/Trichosporonales) and Mortierella as well as some arbuscular mycorrhizal fungi were placed at the central positions of the metacommunity-scale network representing warm-temperate and subtropical forests in southern Japan.ConclusionsThe network theoretical framework presented in this study will help us explore prospective fungi and bacteria, which have high potentials for agricultural application to diverse plant species within each climatic region. As some of those fungal taxa with broad geographic and host ranges have been known to increase the growth and pathogen resistance of host plants, further studies elucidating their functional roles are awaited.

scholarly journals The methylome of the model arbuscular mycorrhizal fungus, Rhizophagus irregularis, shares characteristics with early diverging fungi and Dikarya

2021 ◽  
Vol 4 (1) ◽  
Author(s):  
Anurag Chaturvedi ◽  
Joaquim Cruz Corella ◽  
Chanz Robbins ◽  
Anita Loha ◽  
Laure Menin ◽  
...  
Keyword(s):  
Arbuscular Mycorrhizal Fungi ◽  
Plant Species ◽  
Mycorrhizal Fungi ◽  
Arbuscular Mycorrhizal Fungus ◽  
Mycorrhizal Fungus ◽  
Arbuscular Mycorrhizal ◽  
Rhizophagus Irregularis ◽  
Functional Differences ◽  
Phosphate Regulation ◽  
Very High

AbstractEarly-diverging fungi (EDF) are distinct from Dikarya and other eukaryotes, exhibiting high N6-methyldeoxyadenine (6mA) contents, rather than 5-methylcytosine (5mC). As plants transitioned to land the EDF sub-phylum, arbuscular mycorrhizal fungi (AMF; Glomeromycotina) evolved a symbiotic lifestyle with 80% of plant species worldwide. Here we show that these fungi exhibit 5mC and 6mA methylation characteristics that jointly set them apart from other fungi. The model AMF, R. irregularis, evolved very high levels of 5mC and greatly reduced levels of 6mA. However, unlike the Dikarya, 6mA in AMF occurs at symmetrical ApT motifs in genes and is associated with their transcription. 6mA is heterogeneously distributed among nuclei in these coenocytic fungi suggesting functional differences among nuclei. While far fewer genes are regulated by 6mA in the AMF genome than in EDF, most strikingly, 6mA methylation has been specifically retained in genes implicated in components of phosphate regulation; the quintessential hallmark defining this globally important symbiosis.

Interspecific differences in the tolerance of arbuscular mycorrhizal fungi to freezing and drying

2001 ◽  
Vol 79 (10) ◽  
pp. 1161-1166 ◽  
Author(s):  
John N Klironomos ◽  
Miranda M Hart ◽  
Jane E Gurney ◽  
Peter Moutoglis
Keyword(s):  
Arbuscular Mycorrhizal Fungi ◽  
Plant Species ◽  
Mycorrhizal Fungi ◽  
Arbuscular Mycorrhizal ◽  
Fungal Species ◽  
Drought Treatment ◽  
Interspecific Differences ◽  
The Difference ◽  
One Year ◽  
Arbuscular Mycorrhizal Fungal

Arbuscular mycorrhizal fungal communities in northern temperate ecosystems must function during extremes in environmental conditions. However, it is not known if arbuscular mycorrhizal fungi that co-exist in soil communities have similar tolerances to stresses such as drought and freezing. The phenology of arbuscular mycorrhizal fungi was determined over one year in a community in southern Ontario, Canada. Five fungal species from the same community were then used to inoculate five plant species, in all possible combinations, and were subjected to either a freezing treatment or a drought treatment after which new seedlings were transplanted into the treated pots. The percent colonization of roots of each plant species was measured as the difference in mean colonization from the control. Freezing reduced percent colonization in almost every case, whereas drought resulted in both increased and decreased percent colonization. Fungal species responded differently to the treatments, and there was a pronounced plant × fungus effect. These results support the hypothesis that distinct functional groups of arbuscular mycorrhizal fungi exist, and these may determine plant community structure.Key words: arbuscular mycorrhizal fungi, freezing, drying, functional diversity.

Do arbuscular mycorrhizal fungi play a role in the ability of rare plant species to colonize abandoned fields?

2019 ◽  
Vol 40 ◽  
pp. 118-126
Author(s):  
Clémentine Lepinay ◽  
Tomáš Dostálek ◽  
Hana Pánková ◽  
Martina Svobodová ◽  
Jana Rydlová ◽  
...  
Keyword(s):  
Arbuscular Mycorrhizal Fungi ◽  
Plant Species ◽  
Mycorrhizal Fungi ◽  
Arbuscular Mycorrhizal ◽  
Rare Plant ◽  
Rare Plant Species ◽  
Abandoned Fields

Root-colonizing and soil-borne communities of arbuscular mycorrhizal fungi in a temperate forest understorey

Botany ◽  
2014 ◽  
Vol 92 (4) ◽  
pp. 277-285 ◽  
Author(s):  
Ülle Saks ◽  
John Davison ◽  
Maarja Öpik ◽  
Martti Vasar ◽  
Mari Moora ◽  
...  
Keyword(s):  
Plant Species ◽  
Mycorrhizal Fungi ◽  
Plant Root ◽  
Arbuscular Mycorrhizal ◽  
Small Subunit ◽  
Plant Roots ◽  
Individual Plant ◽  
Amf Communities ◽  
Arbuscular Mycorrhizal Fungal ◽  
Phylogenetic Dispersion

We analyzed arbuscular mycorrhizal fungal (AMF) communities in plant root samples from a natural forest ecosystem — a primeval forest in Järvselja, Estonia. AMF small-subunit (SSU) ribosomal RNA genes were subjected to 454-pyrosequencing and BLAST-based taxonomic identification. Seventy-six AMF sequence groups (virtual taxa, VT) were identified from plant roots. Taken together with seven additional VT recorded in an earlier investigation of soil AMF communities at the site, this represents the highest number of AMF reported from a single ecosystem to date. The six study plant species hosted similar AMF communities. However, AMF community composition in plant roots was significantly different from that in soil and considerably more VT were retrieved from roots than from soil. AMF VT identified from plant roots as a whole and from individual plant species were frequently phylogenetically clustered compared with local and global taxon pools, suggesting that nonrandom assembly processes, notably habitat filtering, may have shaped fungal assemblages. In contrast, the phylogenetic dispersion of AMF communities in soil did not differ from random subsets of the local or global taxon pools.

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