scholarly journals Problematic usage of the Zhang and Luck mixture model

2018 ◽  
Author(s):  
Wei Ji Ma
Keyword(s):  
Uniform Distribution ◽  
Synthetic Data ◽  
Real Data ◽  
Von Mises Distribution ◽  
Candidate Model ◽  
Model Mismatch ◽  
Variable Precision ◽  
Model Free ◽  
True Model ◽  
Von Mises

A common method, due to Zhang and Luck (2008), for analyzing delayed-estimation data with a circular stimulus variable is to fit a mixture of a Von Mises distribution and a uniform distribution. The uniform distribution represents random guesses, presumably made when an item is not kept in memory. When I generate synthetic data from a variable-precision model with zero guessing, the method estimates the guess rate to be nonzero and often high. This is due to model mismatch: the fitted model is not matched to the data-generating (true) model. In real data, this could be a problem if one considers the variable-precision model a plausible candidate model and draws conclusions based on the estimated guess rates. I describe five solutions to this problem: analyzing the residual, ruling out the variable-precision model, robust inference, fitting a hybrid model, and using model-free statistics. I hope that these solutions can contribute to good data analysis practices in the study of working memory.

scholarly journals An IMM Filter Defined in the Linear-Circular Domain, Application to Maneuver Detection with Heading Only

2018 ◽  
Vol 2018 ◽  
pp. 1-14
Author(s):  
Karim El mokhtari ◽  
Serge Reboul ◽  
Georges Stienne ◽  
Jean Bernard Choquel ◽  
Benaissa Amami ◽  
...  
Keyword(s):  
A Priori ◽  
Synthetic Data ◽  
Real Data ◽  
Circular Domain ◽  
Circular Data ◽  
Von Mises Distribution ◽  
A Posteriori ◽  
Circular Distributions ◽  
Vehicle Maneuver ◽  
Von Mises

In this article, we propose a multimodel filter for circular data. The so-called Circular Interacting Multimodel filter is derived in a Bayesian framework with the circular normal von Mises distribution. The aim of the proposed filter is to obtain the same performance in the circular domain as the classical IMM filter in the linear domain. In our approach, the mixing and fusion stages of the Circular Interacting Multimodel filter are, respectively, defined from the a priori and from the a posteriori circular distributions of the state angle knowing the measurements and according to a set of models. We propose in this article a set of circular models that will be used in order to detect the vehicle maneuvers from heading measurements. The Circular Interacting Multimodel filter performances are assessed on synthetic data and we show on real data a vehicle maneuver detection application.

scholarly journals A Clustering Method for Data in Cylindrical Coordinates

2017 ◽  
Vol 2017 ◽  
pp. 1-11 ◽  
Author(s):  
Kazuhisa Fujita
Keyword(s):  
Color Image ◽  
Synthetic Data ◽  
Von Mises Distribution ◽  
Clustering Method ◽  
Cylindrical Coordinates ◽  
Gaussian Distributions ◽  
Image Quantization ◽  
Log Likelihood ◽  
Optimization Function ◽  
Von Mises

We propose a new clustering method for data in cylindrical coordinates based on the k-means. The goal of the k-means family is to maximize an optimization function, which requires a similarity. Thus, we need a new similarity to obtain the new clustering method for data in cylindrical coordinates. In this study, we first derive a new similarity for the new clustering method by assuming a particular probabilistic model. A data point in cylindrical coordinates has radius, azimuth, and height. We assume that the azimuth is sampled from a von Mises distribution and the radius and the height are independently generated from isotropic Gaussian distributions. We derive the new similarity from the log likelihood of the assumed probability distribution. Our experiments demonstrate that the proposed method using the new similarity can appropriately partition synthetic data defined in cylindrical coordinates. Furthermore, we apply the proposed method to color image quantization and show that the methods successfully quantize a color image with respect to the hue element.

scholarly journals Block HSIC Lasso: model-free biomarker detection for ultra-high dimensional data

2019 ◽  
Author(s):  
Héctor Climente-González ◽  
Chloé-Agathe Azencott ◽  
Samuel Kaski ◽  
Makoto Yamada
Keyword(s):  
Single Cell ◽  
Synthetic Data ◽  
Real Data ◽  
Supplementary Information ◽  
Rna Seq ◽  
Link Type ◽  
Model Free ◽  
Computational Overhead ◽  
Expression Microarrays ◽  
And Function

AbstractMotivationFinding nonlinear relationships between biomolecules and a biological outcome is computationally expensive and statistically challenging. Existing methods have crucial drawbacks, among others lack of parsimony, non-convexity, and computational overhead. Here we present the block HSIC Lasso, a nonlinear feature selector that does not present the previous drawbacks.ResultsWe compare the block HSIC Lasso to other state-of-the-art feature selection techniques in synthetic data and real data, including experiments over three common types of genomic data: gene-expression microarrays, single-cell RNA-seq, and GWAS. In all the cases, we observe that features selected by block HSIC Lasso retain more information about the underlying biology than features of other techniques. As a proof of concept, we applied the block HSIC Lasso to a single-cell RNA-seq experiment on mouse hippocampus. We discovered that many genes linked in the past to brain development and function are involved in the biological differences between the types of neurons.AvailabilityBlock HSIC Lasso is implemented in the Python 2/3 package pyHSICLasso, available in Github (https://github.com/riken-aip/pyHSICLasso) and PyPi (https://pypi.org/project/pyHSICLasso)[email protected] informationSupplementary data are available at Bioinformatics online.

Method of determination of the text direction on the image with the use of convolutional neural network

2020 ◽  
pp. 96-99
Author(s):  
P.L. Nikolaev
Keyword(s):  
Neural Network ◽  
Convolutional Neural Network ◽  
Deep Neural Network ◽  
Binary Classification ◽  
Synthetic Data ◽  
Real Data ◽  
Method Of Determination ◽  
Classification Of Images

This article deals with method of binary classification of images with small text on them Classification is based on the fact that the text can have 2 directions – it can be positioned horizontally and read from left to right or it can be turned 180 degrees so the image must be rotated to read the sign. This type of text can be found on the covers of a variety of books, so in case of recognizing the covers, it is necessary first to determine the direction of the text before we will directly recognize it. The article suggests the development of a deep neural network for determination of the text position in the context of book covers recognizing. The results of training and testing of a convolutional neural network on synthetic data as well as the examples of the network functioning on the real data are presented.

An extension of the von mises distribution

1982 ◽  
Vol 11 (15) ◽  
pp. 1695-1706 ◽  
Author(s):  
E.A. Yfantis ◽  
L.E. Borgman
Keyword(s):  
Von Mises Distribution ◽  
Von Mises

scholarly journals G-Tric: generating three-way synthetic datasets with triclustering solutions

2021 ◽  
Vol 22 (1) ◽  
Author(s):  
João Lobo ◽  
Rui Henriques ◽  
Sara C. Madeira
Keyword(s):  
State Of The Art ◽  
Synthetic Data ◽  
Ground Truth ◽  
Real Data ◽  
Three Dimensions ◽  
Additional Advantage ◽  
Urban Dynamics ◽  
Data Generator ◽  
Real World Datasets ◽  
Synthetic Datasets

Abstract Background Three-way data started to gain popularity due to their increasing capacity to describe inherently multivariate and temporal events, such as biological responses, social interactions along time, urban dynamics, or complex geophysical phenomena. Triclustering, subspace clustering of three-way data, enables the discovery of patterns corresponding to data subspaces (triclusters) with values correlated across the three dimensions (observations $$\times$$ × features $$\times$$ × contexts). With increasing number of algorithms being proposed, effectively comparing them with state-of-the-art algorithms is paramount. These comparisons are usually performed using real data, without a known ground-truth, thus limiting the assessments. In this context, we propose a synthetic data generator, G-Tric, allowing the creation of synthetic datasets with configurable properties and the possibility to plant triclusters. The generator is prepared to create datasets resembling real 3-way data from biomedical and social data domains, with the additional advantage of further providing the ground truth (triclustering solution) as output. Results G-Tric can replicate real-world datasets and create new ones that match researchers needs across several properties, including data type (numeric or symbolic), dimensions, and background distribution. Users can tune the patterns and structure that characterize the planted triclusters (subspaces) and how they interact (overlapping). Data quality can also be controlled, by defining the amount of missing, noise or errors. Furthermore, a benchmark of datasets resembling real data is made available, together with the corresponding triclustering solutions (planted triclusters) and generating parameters. Conclusions Triclustering evaluation using G-Tric provides the possibility to combine both intrinsic and extrinsic metrics to compare solutions that produce more reliable analyses. A set of predefined datasets, mimicking widely used three-way data and exploring crucial properties was generated and made available, highlighting G-Tric’s potential to advance triclustering state-of-the-art by easing the process of evaluating the quality of new triclustering approaches.

Single Depth View Based Real-Time Reconstruction of Hand-Object Interactions

2021 ◽  
Vol 40 (3) ◽  
pp. 1-12
Author(s):  
Hao Zhang ◽  
Yuxiao Zhou ◽  
Yifei Tian ◽  
Jun-Hai Yong ◽  
Feng Xu
Keyword(s):  
Real Time ◽  
Synthetic Data ◽  
Real Data ◽  
Depth Image ◽  
Real Time System ◽  
The Real ◽  
Time Performance ◽  
Contact Constraint ◽  
Object Shapes ◽  
Object Interactions

Reconstructing hand-object interactions is a challenging task due to strong occlusions and complex motions. This article proposes a real-time system that uses a single depth stream to simultaneously reconstruct hand poses, object shape, and rigid/non-rigid motions. To achieve this, we first train a joint learning network to segment the hand and object in a depth image, and to predict the 3D keypoints of the hand. With most layers shared by the two tasks, computation cost is saved for the real-time performance. A hybrid dataset is constructed here to train the network with real data (to learn real-world distributions) and synthetic data (to cover variations of objects, motions, and viewpoints). Next, the depth of the two targets and the keypoints are used in a uniform optimization to reconstruct the interacting motions. Benefitting from a novel tangential contact constraint, the system not only solves the remaining ambiguities but also keeps the real-time performance. Experiments show that our system handles different hand and object shapes, various interactive motions, and moving cameras.

scholarly journals Real UAV-Bird Image Classification Using CNN with a Synthetic Dataset

2021 ◽  
Vol 11 (9) ◽  
pp. 3863
Author(s):  
Ali Emre Öztürk ◽  
Ergun Erçelebi
Keyword(s):  
Deep Learning ◽  
Image Classification ◽  
Synthetic Data ◽  
Real Data ◽  
Corner Detection ◽  
Batch Size ◽  
Test Accuracy ◽  
Classification Problems ◽  
Auc Value ◽  
Classification Test

A large amount of training image data is required for solving image classification problems using deep learning (DL) networks. In this study, we aimed to train DL networks with synthetic images generated by using a game engine and determine the effects of the networks on performance when solving real-image classification problems. The study presents the results of using corner detection and nearest three-point selection (CDNTS) layers to classify bird and rotary-wing unmanned aerial vehicle (RW-UAV) images, provides a comprehensive comparison of two different experimental setups, and emphasizes the significant improvements in the performance in deep learning-based networks due to the inclusion of a CDNTS layer. Experiment 1 corresponds to training the commonly used deep learning-based networks with synthetic data and an image classification test on real data. Experiment 2 corresponds to training the CDNTS layer and commonly used deep learning-based networks with synthetic data and an image classification test on real data. In experiment 1, the best area under the curve (AUC) value for the image classification test accuracy was measured as 72%. In experiment 2, using the CDNTS layer, the AUC value for the image classification test accuracy was measured as 88.9%. A total of 432 different combinations of trainings were investigated in the experimental setups. The experiments were trained with various DL networks using four different optimizers by considering all combinations of batch size, learning rate, and dropout hyperparameters. The test accuracy AUC values for networks in experiment 1 ranged from 55% to 74%, whereas the test accuracy AUC values in experiment 2 networks with a CDNTS layer ranged from 76% to 89.9%. It was observed that the CDNTS layer has considerable effects on the image classification accuracy performance of deep learning-based networks. AUC, F-score, and test accuracy measures were used to validate the success of the networks.

scholarly journals sepal: identifying transcript profiles with spatial patterns by diffusion-based modeling

2021 ◽  
Author(s):  
Alma Andersson ◽  
Joakim Lundeberg
Keyword(s):  
Spatial Patterns ◽  
Expression Profiles ◽  
Synthetic Data ◽  
Real Data ◽  
Cell Types ◽  
Statistical Hypothesis ◽  
Supplementary Information ◽  
Statistical Hypothesis Testing ◽  
Transcriptomics Data ◽  
Transcript Profiles

Abstract Motivation Collection of spatial signals in large numbers has become a routine task in multiple omics-fields, but parsing of these rich datasets still pose certain challenges. In whole or near-full transcriptome spatial techniques, spurious expression profiles are intermixed with those exhibiting an organized structure. To distinguish profiles with spatial patterns from the background noise, a metric that enables quantification of spatial structure is desirable. Current methods designed for similar purposes tend to be built around a framework of statistical hypothesis testing, hence we were compelled to explore a fundamentally different strategy. Results We propose an unexplored approach to analyze spatial transcriptomics data, simulating diffusion of individual transcripts to extract genes with spatial patterns. The method performed as expected when presented with synthetic data. When applied to real data, it identified genes with distinct spatial profiles, involved in key biological processes or characteristic for certain cell types. Compared to existing methods, ours seemed to be less informed by the genes’ expression levels and showed better time performance when run with multiple cores. Availabilityand implementation Open-source Python package with a command line interface (CLI), freely available at https://github.com/almaan/sepal under an MIT licence. A mirror of the GitHub repository can be found at Zenodo, doi: 10.5281/zenodo.4573237. Supplementary information Supplementary data are available at Bioinformatics online.

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