scholarly journals New insights on adaptation and population structure of cork oak using genotyping by sequencing

2018 ◽  
Author(s):  
F. Pina-Martins ◽  
J. Baptista ◽  
G. Pappas ◽  
O. S. Paulo
Keyword(s):  
Local Adaptation ◽  
Tree Species ◽  
Evolutionary History ◽  
Genotyping By Sequencing ◽  
Climatic Changes ◽  
Cork Oak ◽  
Ecological Modelling ◽  
Local Context ◽  
Evergreen Forest ◽  
Local Conditions

AbstractSpecies respond to global climatic changes in a local context. Understanding this process is paramount due to the pace of these changes. Tree species are particularly interesting to study in this regard due to their long generation times, sedentarism, and ecological and economic importance. Quercus suber L. is an evergreen forest tree species of the Fagaceae family with an essentially Western Mediterranean distribution. Despite frequent assessments of the species’ evolutionary history, large-scale genetic studies have mostly relied on plastidial markers, whereas nuclear markers have been used on studies with locally focused sampling strategies. The potential response of Q. suber to global climatic changes has also been studied, under ecological modelling. In this work, “Genotyping by Sequencing” (GBS) is used to derive 2,547 SNP markers to assess the species’ evolutionary history from a nuclear DNA perspective, gain insights on how local adaptation may be shaping the species’ genetic background, and to forecast how Q. suber may respond to global climatic changes from a genetic perspective. Results reveal an essentially unstructured species, where a balance between gene flow and local adaptation keeps the species’ gene pool somewhat homogeneous across its distribution, but at the same time allows variation clines for the individuals to cope with local conditions. “Risk of Non-Adaptedness” (RONA) analyses, suggest that for the considered variables and most sampled locations, the cork oak does not require large shifts in allele frequencies to survive the predicted climatic changes. However, more research is required to integrate these results with those of ecological modelling.

scholarly journals Climate-driven divergent selection in a foundation tree species: QST-FST evidence from multiple common gardens

2021 ◽  
Author(s):  
Hillary Cooper ◽  
Gerard Allan ◽  
Lela Andrews ◽  
Rebecca Best ◽  
Kevin Grady ◽  
...  
Keyword(s):  
Local Adaptation ◽  
Tree Species ◽  
Divergent Selection ◽  
Population Variation ◽  
Population Divergence ◽  
Phenotypic Traits ◽  
Local Conditions ◽  
Basal Diameter ◽  
Common Gardens ◽  
Fremont Cottonwood

Widespread tree species span large climatic gradients that often lead to high levels of local adaptation and phenotypic divergence across their range. To evaluate the relative roles of selection and drift in driving divergence in phenotypic traits, we compared molecular and quantitative genetic variation in Populus fremontii (Fremont cottonwood), using data from > 9000 SNPs and genotypes from 16 populations reciprocally planted in three common gardens that span the species’ climatic range. We present three major findings: 1) There is significant within- and among-population variation in functional traits expressed in each of the common gardens. 2) There is evidence from all three gardens that population divergence in leaf phenology and specific leaf area has been driven by divergent selection (QST > FST). In contrast, QST-FST comparisons for performance traits like height and basal diameter were highly dependent on growing environment, indicating divergent, stabilizing, or no selection across the three gardens. We show this is likely due to local adaptation of source populations to contrasting growing environments. 3) Climate is a primary selective force driving trait divergence, where the traits showing the strongest correlations with a genotype’s provenance climate also had the highest QST values. We conclude that climatic gradients have contributed to significant phenotypic differences and local adaptation in Fremont cottonwood. These results are important because as climate is changing much more rapidly, traits such as phenology that are finely tuned to local conditions may now be subject to intense selection or quickly become maladaptive.

Aire et gestion des ressources en chêne du canton de Vaud: dossier d'un avenir immédiat | Resource management and distribution area of oak in canton Vaud: an issue for the immediate future

2009 ◽  
Vol 160 (s1) ◽  
pp. s65-s73
Author(s):  
Denis Horisberger ◽  
Micheline Meylan
Keyword(s):  
Resource Management ◽  
Tree Species ◽  
Climatic Changes ◽  
Distribution Area ◽  
Oak Forests ◽  
Genetic Inheritance ◽  
Main Species ◽  
Forestry Management ◽  
New Situation

When climatic changes are taken into account in forestry management, the question arises of the choice of tree species in order to adapt the forests to increased temperatures and stress arising from lack of water. The oak could be the main species accommodating itself to the new situation up to an altitude of about 900 m. A maximal development of this genetic inheritance adapted to our soils and the reinstallation of a network of oak forests would in fact give a new boost to the exceptional biodiversity linked to this species. In canton Vaud, the application of a sylviculture favourable to the oak would concern a relatively small and reasonable area of approximately 8,000 hectares, which corresponds to less than 20% of the surface theoretically adapted to this species, with a rhythm of rejuvenation of about 40 hectares a year.

scholarly journals The conflict between attempts to green arid cities and urban livelihoods The case of Dodoma, Tanzania

2003 ◽  
Vol 10 (1) ◽  
pp. 25 ◽  
Author(s):  
Aldo Lupala ◽  
John Lupala
Keyword(s):  
Climatic Conditions ◽  
Capital City ◽  
Local Context ◽  
City Development ◽  
Local Conditions ◽  
Master Plans ◽  
Contributory Factors ◽  
Urban Livelihoods ◽  
Planning Concepts ◽  
The City

One of the features that characterise the designated capital city of Dodoma is the limited green landscape element as a result of semiarid climatic conditions of the whole central region of Tanzania. Besides concerted efforts by the Dodoma urban authorities to develop greenery landscape within the city through the Capital City Development Programme, such efforts have fallen into conflict with people’s livelihood activities. In this paper, it is argued that the gap between identification of appropriate landscape features that are not consistent with people's lifestyles and the local conditions are the contributory factors to the observed conflicts between attempts to green the city and livelihoods of the residents. Borrowed planning concepts in the masterplans thatwere imposed on the contextof Dodoma do not reflectthe realityof thepeople's needs and priorities as regards their livelihoods. These concepts have to the greatest extent failed to integrate livelihood activities and greening initiatives. This paper underscores the need for developing locally based planning considerations that take cognisance of all stakeholders and the local context as a way towards harmonising greening initiatives while accommodating people's livelihood needs and activities.Key Words: greening initiatives, livelihood activities, semi-arid cities, urban planning, master plans, Dodoma, Tanzania. 

scholarly journals Cultural and climatic changes shape the evolutionary history of the Uralic languages

2013 ◽  
Vol 26 (6) ◽  
pp. 1244-1253 ◽  
Author(s):  
T Honkola ◽  
O Vesakoski ◽  
K Korhonen ◽  
J Lehtinen ◽  
K Syrjänen ◽  
...  
Keyword(s):  
Evolutionary History ◽  
Climatic Changes ◽  
History Of

scholarly journals Effect of Disturbance Regimes on Spatial Patterns of Tree Species in Three Sites in a Tropical Evergreen Forest in Vietnam

2016 ◽  
Vol 2016 ◽  
pp. 1-16 ◽  
Author(s):  
Do Thi Ngoc Le ◽  
Nguyen Van Thinh ◽  
Nguyen The Dung ◽  
Ralph Mitlöhner
Keyword(s):  
Spatial Patterns ◽  
Tree Species ◽  
Interspecific Interactions ◽  
Abundant Species ◽  
Evergreen Forest ◽  
Small Scale ◽  
Forest Types ◽  
Disturbance Regimes ◽  
Tropical Evergreen Forest ◽  
Disturbed Forest

The effects of disturbance regimes on the spatial patterns of the five most abundant species were investigated in three sites in a tropical forest at Xuan Nha Nature Reserve, Vietnam. Three permanent one-ha plots were established in undisturbed forest (UDF), lightly disturbed forest (LDF), and highly disturbed forest (HDF). All trees ≥5 cm DBH were measured in twenty-five 20 m × 20 m subplots. A total of 57 tree species belonging to 26 families were identified in the three forest types. The UDF had the highest basal area (30 m2 ha−1), followed by the LDF (17 m2 ha−1) and the HDF (13.0 m2 ha−1). The UDF also had the highest tree density (751 individuals ha−1) while the HDF held the lowest (478 individuals ha−1). Across all species, there were 417 “juveniles,” 267 “subadults,” and 67 “adults” in the UDF, while 274 “juveniles,” 230 “subadults,” and 36 “adults” were recorded in the LDF. 238 “juveniles,” 227 “subadults,” and 13 “adults” were obtained in the HDF. The univariate and bivariate data with pair- and mark-correlation functions of intra- and interspecific interactions of the five most abundant species changed in the three forest types. Most species indicated clumping or regular distributions at small scale, but a high ratio of negative interspecific small-scale associations was recorded in both the LDF and HDF sites. These were, however, rare in the UDF.

scholarly journals Evolutionary history predicts the response of tree species to forest loss: A case study in peninsular Spain

PLoS ONE ◽  
2018 ◽  
Vol 13 (9) ◽  
pp. e0204365 ◽  
Author(s):  
Rafael Molina-Venegas ◽  
Sonia Llorente-Culebras ◽  
Paloma Ruiz-Benito ◽  
Miguel A. Rodríguez
Keyword(s):  
Tree Species ◽  
Evolutionary History ◽  
Forest Loss ◽  
Peninsular Spain

scholarly journals Genome sequencing and phylogenetic analysis of allotetraploid Salix matsudana Koidz

2020 ◽  
Vol 7 (1) ◽  
Author(s):  
Jian Zhang ◽  
Huwei Yuan ◽  
Yujuan Li ◽  
Yanhong Chen ◽  
Guoyuan Liu ◽  
...  
Keyword(s):  
Genome Sequencing ◽  
Genome Sequence ◽  
Tree Species ◽  
Evolutionary History ◽  
Genetic Basis ◽  
Populus Trichocarpa ◽  
Willow Species ◽  
History Of ◽  
Salix Matsudana ◽  
Salix Matsudana Koidz

AbstractPolyploidy is a common phenomenon among willow species. In this study, genome sequencing was conducted for Salix matsudana Koidz (also named Chinese willow), an important greening and arbor tree species, and the genome of this species was compared with those of four other tree species in Salicaceae. The total genome sequence of S. matsudana was 655.72 Mb in size, with repeated sequences accounting for 45.97% of the total length. In total, 531.43 Mb of the genome sequence could be mapped onto 38 chromosomes using the published genetic map as a reference. The genome of S. matsudana could be divided into two groups, the A and B genomes, through homology analysis with the genome of Populus trichocarpa, and the A and B genomes contained 23,985 and 25,107 genes, respectively. 4DTv combined transposon analysis predicted that allotetraploidy in S. matsudana appeared ~4 million years ago. The results from this study will help reveal the evolutionary history of S. matsudana and lay a genetic basis for its breeding.

scholarly journals Local Knowledge about Ecosystem Services Provided by Trees in Coffee Agroforestry Practices in Northwest Vietnam

Land ◽  
2020 ◽  
Vol 9 (12) ◽  
pp. 486
Author(s):  
Mai Phuong Nguyen ◽  
Philippe Vaast ◽  
Tim Pagella ◽  
Fergus Sinclair
Keyword(s):  
Ecosystem Services ◽  
Rural Communities ◽  
Tree Species ◽  
Market Access ◽  
Agricultural Practices ◽  
Economic Benefits ◽  
Local Context ◽  
Coffee Agroforestry ◽  
The Impact ◽  
Agroforestry Practices

In recent decades in northwest Vietnam, Arabica coffee has been grown on sloping land in intensive, full sun monocultures that are not sustainable in the long term and have negative environmental impacts. There is an urgent need to reverse this negative trend by promoting good agricultural practices, including agroforestry, to prevent further deforestation and soil erosion on slopes. A survey of 124 farmers from three indigenous groups was conducted in northwest Vietnam to document coffee agroforestry practices and the ecosystem services associated with different tree species used in them. Trees were ranked according to the main ecosystem services and disservices considered to be locally relevant by rural communities. Our results show that tree species richness in agroforestry plots was much higher for coffee compared to non-coffee plots, including those with annual crops and tree plantations. Most farmers were aware of the benefits of trees for soil improvement, shelter (from wind and frost), and the provision of shade and mulch. In contrast, farmers had limited knowledge of the impact of trees on coffee quality and other interactions amongst trees and coffee. Farmers ranked the leguminous tree species Leucaena leucocephala as the best for incorporating in coffee plots because of the services it provides to coffee. Nonetheless, the farmers’ selection of tree species to combine with coffee was highly influenced by economic benefits provided, especially by intercropped fruit trees, which was influenced by market access, determined by the proximity of farms to a main road. The findings from this research will help local extension institutions and farmers select appropriate tree species that suit the local context and that match household needs and constraints, thereby facilitating the transition to a more sustainable and climate-smart coffee production practice.

scholarly journals Local adaptation to herbivory within tropical tree species along a rainfall gradient

Ecology ◽  
2020 ◽  
Vol 101 (11) ◽  
Author(s):  
Andrew J. Muehleisen ◽  
Bettina M. J. Engelbrecht ◽  
Frank Andrew Jones ◽  
Eric Manzané‐Pinzón ◽  
Liza S. Comita
Keyword(s):  
Local Adaptation ◽  
Tree Species ◽  
Tropical Tree ◽  
Rainfall Gradient ◽  
Tropical Tree Species

scholarly journals Evolutionary history of a widespread tree species A cer mono in E ast A sia

2014 ◽  
Vol 4 (22) ◽  
pp. 4332-4345 ◽  
Author(s):  
Xi‐Di Guo ◽  
Hong‐Fang Wang ◽  
Lei Bao ◽  
Tian‐Ming Wang ◽  
Wei‐Ning Bai ◽  
...  
Keyword(s):  
Tree Species ◽  
Evolutionary History ◽  
History Of
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