scholarly journals Cryptic, extensive and non-random chromosome reorganization revealed by a butterfly chromonome

2017 ◽  
Author(s):  
Jason Hill ◽  
Pasi Rastas ◽  
Emil A. Hornett ◽  
Ramprasad Neethiraj ◽  
Nathan Clark ◽  
...  
Keyword(s):  
Chromosome Evolution ◽  
Chromosome Structure ◽  
Chromosomal Evolution ◽  
Holocentric Chromosomes ◽  
Structural Constraints ◽  
Chromosome Counts ◽  
Pieris Napi ◽  
Haploid Chromosome Number ◽  
Shared Gene ◽  
Chromosome Level

AbstractChromosome evolution, an important component of mico- and macroevolutionary dynamics 1–5, presents an enigma in the mega-diverse Lepidoptera6. While most species exhibit constrained chromosome evolution, with nearly identical haploid chromosome counts and chromosome-level shared gene content and collinearity among species despite more than 140 Million years of divergence7, a small fraction of species independently exhibit dramatic changes in chromosomal count due to extensive fission and fusion events that are facilitated by their holocentric chromosomes7–9. Here we address this enigma of simultaneous conservation and dynamism in chromosome evolution in our analysis of the chromonome (chromosome level assembly10) of the green-veined white butterfly, Pieris napi (Pieridae, Linnaeus, 1758). We report an unprecedented reorganization of the standard Lepidopteran chromosome structure via more than 90 fission and fusion events that are cryptic at other scales, as the haploid chromosome number is identical to related genera and gene collinearity within the large rearranged segments matches other Lepidoptera. Furthermore, these rearranged segments are significantly enriched for clusters of functionally related genes and the maintenance of ancient telomeric ends. These results suggest an unexpected role for selection in shaping chromosomal evolution when the structural constraints of monocentricq chromosomes are relaxed.

scholarly journals Unprecedented reorganization of holocentric chromosomes provides insights into the enigma of lepidopteran chromosome evolution

2019 ◽  
Vol 5 (6) ◽  
pp. eaau3648 ◽  
Author(s):  
Jason Hill ◽  
Pasi Rastas ◽  
Emily A. Hornett ◽  
Ramprasad Neethiraj ◽  
Nathan Clark ◽  
...  
Keyword(s):  
Chromosome Number ◽  
Chromosome Evolution ◽  
Chromosome Structure ◽  
Holocentric Chromosomes ◽  
Chromosome Counts ◽  
Pieris Napi ◽  
Haploid Chromosome Number ◽  
Genome Wide ◽  
The Face ◽  
Chromosome Level

Chromosome evolution presents an enigma in the mega-diverse Lepidoptera. Most species exhibit constrained chromosome evolution with nearly identical haploid chromosome counts and chromosome-level gene collinearity among species more than 140 million years divergent. However, a few species possess radically inflated chromosomal counts due to extensive fission and fusion events. To address this enigma of constraint in the face of an exceptional ability to change, we investigated an unprecedented reorganization of the standard lepidopteran chromosome structure in the green-veined white butterfly (Pieris napi). We find that gene content in P. napi has been extensively rearranged in large collinear blocks, which until now have been masked by a haploid chromosome number close to the lepidopteran average. We observe that ancient chromosome ends have been maintained and collinear blocks are enriched for functionally related genes suggesting both a mechanism and a possible role for selection in determining the boundaries of these genome-wide rearrangements.

scholarly journals Microsatellite and Chromosome Evolution of Parthenogenetic Sitobion Aphids in Australia

Genetics ◽  
1996 ◽  
Vol 144 (2) ◽  
pp. 747-756 ◽  
Author(s):  
Paul Sunnucks ◽  
Phillip R England ◽  
Andrea C Taylor ◽  
Dinah F Hales
Keyword(s):  
Sexual Reproduction ◽  
Chromosome Evolution ◽  
Genetic Recombination ◽  
Allelic Variation ◽  
Repeat Unit ◽  
Chromosomal Evolution ◽  
Microsatellite Variation ◽  
Wide Range ◽  
Sexual Recombination ◽  
Minimum Numbers

Abstract Single-locus microsatellite variation correlated perfectly with chromosome number in Sitobion miscanthi aphids. The microsatellites were highly heterozygous, with up to 10 alleles per locus in this species. Despite this considerable allelic variation, only seven different S. miscanthi genotypes were discovered in 555 individuals collected from a wide range of locations, hosts and sampling periods. Relatedness between genotypes suggests only two successful colonizations of Australia. There was no evidence for genetic recombination in 555 S. miscanthi so the occurrence of recent sexual reproduction must be near zero. Thus diversification is by mutation and chromosomal rearrangement alone. Since the aphids showed no sexual recombination, microsatellites can mutate without meiosis. Five of seven microsatellite differences were a single repeat unit, and one larger jump is likely. The minimum numbers of changes between karyotypes corresponded roughly one-to-one with microsatellite allele changes, which suggests very rapid chromosomal evolution. A chromosomal fission occurred in a cultured line, and a previously unknown chromosomal race was detected. All 121 diverse S. near fragariae were heterozygous but revealed only one genotype. This species too must have a low rate of sexual reproduction and few colonizations of Australia.

The early development of haploid and aneuploid parthenogenetic embryos

Development ◽  
1975 ◽  
Vol 34 (3) ◽  
pp. 645-655
Author(s):  
Matthew H. Kaufman ◽  
Leo Sachs
Keyword(s):  
Early Development ◽  
Polar Body ◽  
Chromosome Counts ◽  
Cell Stage ◽  
Haploid Chromosome Number ◽  
Stage Of Development ◽  
Morula Stage ◽  
Second Polar Body ◽  
Similar Development ◽  
Parthenogenetic Embryos

The early development of parthenogenetically activated oocytes has been studied in C57BL × CBA-T6T6 (F1T6) translocation heterozygote mice and C57BL × CBA-LAC (F1LAC) mice. All F1T6 oocytes had either a quadrivalent or a univalent-trivalent configuration at meiosis I; no such chromosome configurations were observed in the F1LAC oocytes. At ovulation 36·5 % of the F1T6 oocytes had 19 or 21 chromosomes, whereas 97 % of the F1LAC had the normal haploid chromosome number of 20. After parthenogenetic activation, chromosome counts at metaphase of the first cleavage mitosis were made of the eggs with a single pronucleus following extrusion of the second polar body. These activated eggs had similar frequencies of 19, 20 and 21 chromosomes as had the oocytes at ovulation. The activated 1-cell eggs were transferred to the oviducts of pseudopregnant recipients and the embryos recovered 3 days later. At this stage of development, most of the F1T6 embryos with 19 chromosomes were no longer found, but the frequency of 21-chromosome embryos was similar to the frequency of 21-chromosome oocytes and activated eggs. There was a similar mean number of cells in the embryos with 20 and 21 chromosomes. The results indicate that nearly all the embryos with 19 chromosomes failed to develop, probably beyond the 2-cell stage, whereas oocytes with 21 chromosomes had a similar development to oocytes with 20 chromosomes up to the morula stage.

scholarly journals Monocentric chromosomes in Juncus (Juncaceae) and implications for the chromosome evolution of the family

2019 ◽  
Vol 191 (4) ◽  
pp. 475-483 ◽  
Author(s):  
Marcelo Guerra ◽  
Tiago Ribeiro ◽  
Leonardo P Felix
Keyword(s):  
In Situ Hybridization ◽  
Fluorescent In Situ Hybridization ◽  
Chromosome Evolution ◽  
Holocentric Chromosomes ◽  
Mitotic Chromosomes ◽  
Restricted Area ◽  
Rdna Sites ◽  
The Family ◽  
Meiotic Analyses

Abstract Holocentric chromosomes are rare among angiosperms, but have been suggested to be shared by all or most of the species of Cyperaceae and Juncaceae. However, no clear demonstration of the centromere type in Juncus, the largest genus of Juncaceae, has so far been published. Thus, we conducted a detailed chromosomal investigation of four Juncus spp. aiming to identify their centromere type. Mitotic chromosomes were analysed using the fluorochromes CMA and DAPI, fluorescent in situ hybridization (FISH) with rDNA probes and immunodetection of histones H3 phosphorylated at serine 10 (H3-S10ph) and H2A phosphorylated at threonine 133 (H2A-T133ph). DAPI-stained chromosomes of all species displayed typical primary constrictions, which were not related to AT-poor CMA+ heterochromatin or rDNA sites (usually negatively stained with DAPI). Immunodetection with H3-S10ph and H2A-T133ph revealed hyperphosphorylation of pericentromeric and centromeric regions, respectively, in a restricted area, as observed in monocentric chromosomes. Meiotic analyses in J. microcephalus showed no indication of inverted meiosis, commonly found in plants with holocentric chromosomes. Since the species investigated here belong to four different sections of Juncus and all of them display typical monocentric chromosomes, it seems that this kind of centromere is common in the genus and may represent the standard centromere organization for Juncus. If Juncus has monocentric chromosomes, there is no reason to hypothesize that other genera of Juncaceae for which centromeres have not been carefully investigated have holocentric chromosomes.

scholarly journals An Annotated Chromosome-Level Reference Genome of the Red-Eared Slider Turtle (Trachemys scripta elegans)

2020 ◽  
Vol 12 (4) ◽  
pp. 456-462 ◽  
Author(s):  
Warren Brian Simison ◽  
James F Parham ◽  
Theodore J Papenfuss ◽  
Athena W Lam ◽  
James B Henderson
Keyword(s):  
Reference Genome ◽  
Single Copy ◽  
Trachemys Scripta ◽  
Future Research ◽  
Chromosome Counts ◽  
Trachemys Scripta Elegans ◽  
Chromosome Fusion ◽  
Slider Turtle ◽  
Tetrapod Evolution ◽  
Chromosome Level

Abstract Among vertebrates, turtles have many unique characteristics providing biologists with opportunities to study novel evolutionary innovations and processes. We present here a high-quality, partially phased, and chromosome-level Red-Eared Slider (Trachemys scripta elegans, TSE) genome as a reference for future research on turtle and tetrapod evolution. This TSE assembly is 2.269 Gb in length, has one of the highest scaffold N50 and N90 values of any published turtle genome to date (N50 = 129.68 Mb and N90 = 19 Mb), and has a total of 28,415 annotated genes. We introduce synteny analyses using BUSCO single-copy orthologs, which reveal two chromosome fusion events accounting for differences in chromosome counts between emydids and other cryptodire turtles and reveal many fission/fusion events for birds, crocodiles, and snakes relative to TSE. This annotated chromosome-level genome will provide an important reference genome for future studies on turtle, vertebrate, and chromosome evolution.

The chromosome numbers of five North American and European leech species

1987 ◽  
Vol 65 (3) ◽  
pp. 681-684 ◽  
Author(s):  
Ronald W. Davies ◽  
R. N. Singhal
Keyword(s):  
Chromosome Number ◽  
North American ◽  
Chromosome Numbers ◽  
Chromosome Evolution ◽  
Chromosome Counts ◽  
Prophase I ◽  
Metaphase I

Chromosome counts were obtained for four glossiphoniid species belonging to three genera (Glossiphonia, Theromyzon, Placobdella) and for one erpobdellid species (Dina lineata) of freshwater leeches. Theromyzon rude, which has a Palaearctic distribution, had seven bivalents at prophase I and metaphase I, while the Holarctic T. tessulatum had eight bivalents, giving diploid chromosome numbers of 14 and 16, respectively. Placobdella papillifera from Alberta had a chromosome number of 2n = 24 and Glossiphonia complanata from Alberta and England had chromosome counts of 2n = 28. At prophase I and metaphase I nine bivalents occurred in the majority of the nuclei of Dina lineata. These findings are discussed in relation to the chromosome evolution and phylogenetic schemes proposed by previous authors.

Recherches sur les Alaria (Phaeophyceae) de l'est canadien. I. Nombres chromosomiques et identité des Alaria de l'estuaire du St-Laurent

1974 ◽  
Vol 52 (4) ◽  
pp. 691-694 ◽  
Author(s):  
M.-J. Feller-Demalsy ◽  
P. Demalsy
Keyword(s):  
Chromosome Number ◽  
Single Species ◽  
Chromosome Counts ◽  
Eastern Canada ◽  
Lawrence Estuary ◽  
Haploid Chromosome Number ◽  
Biosystematic Study ◽  
Alaria Esculenta ◽  
St Lawrence Estuary

Chromosome counts in gametophytes and sporophylls of Alaria collected in the St. Lawrence Estuary show that all the specimens of this genus in eastern Canada may not belong to the single species A. esculenta Greville. Indeed, the haploid chromosome number (n) found in these algae is equal to half of the number attributed in the literature to Alaria esculenta from the British coasts. Three hypotheses for the interpretation of these observations are considered. The solution of the problem of the identity of Alaria can only be hoped for from their global, morphological, and biosystematic study.

scholarly journals Karyotypic analyses and genomic affinity among Argentinean species of Passiflora

Rodriguésia ◽  
2020 ◽  
Vol 71 ◽  
Author(s):  
Verónica Lucía Bugallo ◽  
María Florencia Realini ◽  
Gabriela Rosa Facciuto ◽  
Lidia Poggio
Keyword(s):  
Low Temperatures ◽  
Evolutionary Process ◽  
Chromosomal Evolution ◽  
Chromosome Length ◽  
Basic Number ◽  
Chromosome Counts ◽  
Breeding Programs ◽  
Unequal Distribution ◽  
Basic Chromosome ◽  
Rdna Sites

Abstract The genus Passiflora (Passifloraceae) has more than 500 species, nineteen are native to Argentina. By their austral distribution, these species were included in breeding programs to obtain ornamental varieties tolerant to low temperatures. The aim of this work was to know the cytogenetic characteristics of Passiflora genotypes present in a working collection, as an indispensable knowledge for the development of a breeding plan. Chromosomal preparations were performed and karyotypic characteristics, rDNA sites by FISH and affinity among subgenera by GISH were studied. Chromosome counts in fourteen Argentinean species confirmed the basic chromosome numbers previously published: x = 6 for subgenus Decaloba, x = 9 for subgenus Passiflora and x = 10 for Dysosmia. The karyotypic parameters (karyotype, haploid chromosome length and asymmetry indices) and genomic affinities among the subgenera, clarify most of the chromosomal evolution of the genus. The results obtained strongly suggest that the basic number x = 6 would be the original one and that x = 9 was originated by processes of polyploidy and descendent dysploidy. Since subgenus Passiflora possesses the largest genomes, it is postulated that evolutionary process leading to x = 9 was accompanied by unequal distribution of non-coding repetitive DNA, mainly transposable elements. These processes could explain the asymmetrical karyotypes of species of subgenus Passiflora.

scholarly journals Cladogenetic and Anagenetic Models of Chromosome Number Evolution: a Bayesian Model Averaging Approach

2016 ◽  
Author(s):  
William A. Freyman ◽  
Sebastian Höhna
Keyword(s):  
Chromosome Number ◽  
Reproductive Isolation ◽  
Probabilistic Models ◽  
Chromosome Evolution ◽  
Bayesian Model Averaging ◽  
Model Averaging ◽  
Chromosomal Evolution ◽  
Parameter Estimates ◽  
Chromosome Number Evolution ◽  
Gains And Losses

AbstractChromosome number is a key feature of the higher-order organization of the genome, and changes in chromosome number play a fundamental role in evolution. Dysploid gains and losses in chromosome number, as well as polyploidization events, may drive reproductive isolation and lineage diversification. The recent development of probabilistic models of chromosome number evolution in the groundbreaking work by Mayrose et al. (2010, ChromEvol) have enabled the inference of ancestral chromosome numbers over molecular phylogenies and generated new interest in studying the role of chromosome changes in evolution. However, the ChromEvol approach assumes all changes occur anagenetically (along branches), and does not model events that are specifically cladogenetic. Cladogenetic changes may be expected if chromosome changes result in reproductive isolation. Here we present a new class of models of chromosome number evolution (called ChromoSSE) that incorporate both anagenetic and cladogenetic change. The ChromoSSE models allow us to determine the mode of chromosome number evolution; is chromosome evolution occurring primarily within lineages, primarily at lineage splitting, or in clade-specific combinations of both? Furthermore, we can estimate the location and timing of possible chromosome speciation events over the phylogeny. We implemented ChromoSSE in a Bayesian statistical framework, specifically in the software RevBayes, to accommodate uncertainty in parameter estimates while leveraging the full power of likelihood based methods. We tested ChromoSSE’s accuracy with simulations and re-examined chromosomal evolution in Aristolochia, Carex section Spirostachyae, Helianthus, Mimulus sensu lato (s.l.), and Primula section Aleuritia, finding evidence for clade-specific combinations of anagenetic and cladogenetic dysploid and polyploid modes of chromosome evolution.

Karyological analysis and genome size in Milium (Gramineae) with special reference to polyploidy and chromosomal evolution

Genome ◽  
1991 ◽  
Vol 34 (6) ◽  
pp. 868-878 ◽  
Author(s):  
Simon T. Bennett ◽  
Sandra M. Thomas
Keyword(s):  
Genome Size ◽  
Geographical Distribution ◽  
Dna Sequences ◽  
Chromosome Evolution ◽  
Nuclear Dna ◽  
Chromosomal Evolution ◽  
System Support ◽  
Strong Resemblance ◽  
First Time ◽  
Dna Amounts

Karyotypes, nuclear DNA amounts, and meiotic behaviour are presented for Milium effusum L. (2n = 28), Milium montianum Parl. (2n = 22), and two cytotypes of Milium vernale Bieb. (2n = 8, 10). The bimodal karyotype of M. montianum (8 large and 14 small chromosomes) is described for the first time. Evidence from C-banding and geographical distribution suggests an ancient interracial allopolyploid origin for M. effusum (2n = 28). Although M. montianum is undoubtedly allopolyploid, its parentage is unconfirmed. A strong resemblance between the M. vernale (2n = 8) karyotype and the eight large chromosomes in M. montianum suggests a common ancestry. It is possible that a diploid form of M. effusum contributed the remaining 14 chromosomes. A selective loss of DNA sequences from the smaller chromosomes during the subsequent reorganization of the allopolyploid genome may have enhanced the bimodality of the karyotype. Geographical distribution and a change in the breeding system support the direction of the change x = 5 to x = 4 in M. vernale. Allopolyploidy appears to have played a central role in the chromosome evolution and speciation of Milium.Key words: Milium (Gramineae), karyotype analysis, genome size, polyploidy, chromosome evolution.

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