scholarly journals Characterizing the Liquid-liquid Phase Co-existence in Biomembrane: Insights from Local Non-affine Deformation and Topological Rearrangements

2017 ◽  
Author(s):  
Sahithya S. Iyer ◽  
Madhusmita Tripathy ◽  
Anand Srivastava

AbstractLateral heterogeneities in bio-membranes play a crucial role in various physiological functions of the cell. Such heterogeneities lead to demixing of lipid constituents and formation of distinct liquid domains in the membrane. We study lateral heterogeneities in terms of the topological rearrangements of lipids, to identify liquid-liquid phase co-existence in model membranes. By quantifying the degree of non-affineness associated with individual lipid, we are able to characterize the liquid ordered (Lo) and liquid disordered (Ld) phases in model lipid bilayers, without any prior knowledge on chemical identity of the lipids. We explore the usage of this method on all atom and coarse-grained lipid bilayer trajectories. This method is helpful in defining the instantaneous Lo-Ld domain boundaries in complex multi-component bilayer systems. The characterization can also highlight the effect of line-active molecules on the phase boundaries and domain mixing. Overall, we propose a framework to explore the molecular origin of spatial and dynamical heterogeneity in bio-membranes systems, which can not only be exploited in computer simulation, but also in experiments.

Nanoscale ◽  
2019 ◽  
Vol 11 (6) ◽  
pp. 2767-2778 ◽  
Author(s):  
Jonathan K. Sheavly ◽  
Joel A. Pedersen ◽  
Reid C. Van Lehn

Coarse-grained molecular dynamics simulations and free energy calculations reveal that cationic nanoparticles preferentially adsorb to regions of intrinsic negative curvature at phase boundaries in multicomponent lipid bilayers.


Soft Matter ◽  
2019 ◽  
Vol 15 (9) ◽  
pp. 1942-1952
Author(s):  
Sebastian Meinhardt ◽  
Friederike Schmid

Coarse-grained molecular simulation studies of the lateral domain structure in multicomponent lipid bilayers reveal different morphological regimes.


1995 ◽  
pp. 307-312 ◽  
Author(s):  
R. M. Overney ◽  
H. Takano ◽  
M. Fujihira ◽  
G. Overney ◽  
W. Paulus ◽  
...  

Life ◽  
2020 ◽  
Vol 10 (6) ◽  
pp. 98 ◽  
Author(s):  
Carlos Navarro-Paya ◽  
Maximo Sanz-Hernandez ◽  
Alfonso De Simone

The membrane binding by α-synuclein (αS), a presynaptic protein whose aggregation is strongly linked with Parkinson’s disease, influences its biological behavior under functional and pathological conditions. This interaction requires a conformational transition from a disordered-unbound to a partially helical membrane-bound state of the protein. In the present study, we used enhanced coarse-grained MD simulations to characterize the sequence and conformational determinants of the binding to synaptic-like vesicles by the N-terminal region of αS. This region is the membrane anchor and is of crucial importance for the properties of the physiological monomeric state of αS as well as for its aberrant aggregates. These results identify the key factors that play a role in the binding of αS with synaptic lipid bilayers in both membrane-tethered and membrane-locked conformational states.


1989 ◽  
Vol 93 (25) ◽  
pp. 8204-8212 ◽  
Author(s):  
Thomas Wandlowski ◽  
Vladimir Marecek ◽  
Karel Holub ◽  
Zdenek Samec

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