scholarly journals Leveraging heterogeneity for neural computation with fading memory in layer 2/3 cortical microcircuits

2017 ◽  
Author(s):  
Renato Duarte ◽  
Abigail Morrison
Keyword(s):  
Large Scale ◽  
Fading Memory ◽  
Multiple Sources ◽  
Biologically Inspired ◽  
Functional Roles ◽  
Layer 2 ◽  
Cortical Microcircuits ◽  
Cortical Models ◽  
The Individual ◽  
And Function

AbstractComplexity and heterogeneity are intrinsic to neurobiological systems, manifest in every process, at every scale, and are inextricably linked to the systems’ emergent collective behaviours and function. However, the majority of studies addressing the dynamics and computational properties of biologically inspired cortical microcircuits tend to assume (often for the sake of analytical tractability) a great degree of homogeneity in both neuronal and synaptic/connectivity parameters. While simplification and reductionism are necessary to understand the brain’s functional principles, disregarding the existence of the multiple heterogeneities in the cortical composition, which may be at the core of its computational proficiency, will inevitably fail to account for important phenomena and limit the scope and generalizability of cortical models. We address these issues by studying the individual and composite functional roles of heterogeneities in neuronal, synaptic and structural properties in a biophysically plausible layer 2/3 microcircuit model, built and constrained by multiple sources of empirical data. This approach was made possible by the emergence of large-scale, well curated databases, as well as the substantial improvements in experimental methodologies achieved over the last few years. Our results show that variability in single neuron parameters is the dominant source of functional specialization, leading to highly proficient microcircuits with much higher computational power than their homogeneous counterparts. We further show that fully heterogeneous circuits, which are closest to the biophysical reality, owe their response properties to the differential contribution of different sources of heterogeneity.

scholarly journals Modeling robust and efficient coding in the mouse primary visual cortex using computational perturbations

2020 ◽  
Author(s):  
Binghuang Cai ◽  
Yazan N. Billeh ◽  
Selmaan N. Chettih ◽  
Christopher D. Harvey ◽  
Christof Koch ◽  
...  
Keyword(s):  
Visual Cortex ◽  
Primary Visual Cortex ◽  
Large Scale ◽  
Scale Model ◽  
Cortical Model ◽  
Functional Roles ◽  
Visual Inputs ◽  
Large Scale Model ◽  
Layer 2 ◽  
Robust Codes

AbstractInvestigating how visual inputs are encoded in visual cortex is important for elucidating the roles of cell populations in circuit computations. We here use a recently developed, large-scale model of mouse primary visual cortex (V1) and perturb both single neurons as well as functional- and cell-type defined population of neurons to mimic equivalent optogenetic perturbations. First, perturbations were performed to study the functional roles of layer 2/3 excitatory neurons in inter-laminar interactions. We observed activity changes consistent with the canonical cortical model (Douglas and Martin 1991). Second, single neuron perturbations in layer 2/3 revealed a center-surround inhibition-dominated effect, consistent with recent experiments. Finally, perturbations of multiple excitatory layer 2/3 neurons during visual stimuli of varying contrasts indicated that the V1 model has both efficient and robust coding features. The circuit transitions from predominantly broad like-to-like inhibition at high contrasts to predominantly specific like-to-like excitation at low contrasts. These in silico results demonstrate how the circuit can shift from redundancy reduction to robust codes as a function of stimulus contrast.

scholarly journals Evaluating and ranking Southeast Asia's exposure to explosive volcanic hazards

2021 ◽  
Author(s):  
Susanna F. Jenkins ◽  
Sébastien Biass ◽  
George T. Williams ◽  
Josh L. Hayes ◽  
Eleanor M. Tennant ◽  
...  
Keyword(s):  
Large Scale ◽  
Risk Mitigation ◽  
Volcanic Hazards ◽  
The Philippines ◽  
Spatial Extent ◽  
Population Exposure ◽  
Multiple Sources ◽  
Individual Country ◽  
Road Map ◽  
The Individual

Abstract. Regional assessments provide a large-scale comparable vision of the threat posed by multiple sources and are useful for prioritising risk-mitigation actions. There is a need for such assessments from international, regional and national agencies, industries and governments to prioritise where further study and support could be focussed. Most existing regional studies on the threat posed by volcanic activity have relied on concentric radii as proxies for hazard footprints and have focused only on population exposure, often using indices to make first-order estimates of exposure. However, this approach is an oversimplification of volcanic hazards and their associated impacts. We have developed and applied a new approach that quantifies and ranks exposure to multiple volcanic hazards for 40 high-threat volcanoes in Southeast Asia. For each of our 40 volcanoes, hazard spatial extent, and intensity where appropriate, was probabilistically modelled for four volcanic hazards across three eruption scenarios, giving 697,080 individual hazard footprints plus 19,560 probabilistic hazard outputs. We then developed a GIS framework to overlay the spatial extent of probabilistic hazard footprints with open-access datasets across five exposure categories. Finally, we used our calculated exposure values to rank each of the 40 volcanoes in terms of the threat they pose to surrounding communities. We present VolcGIS, an open-source Python code that implements all of the spatial operations required for exposure analysis, available at github.com/vharg/VolcGIS. We provide all our outputs - more than 6,500 geotif files and 70 independent estimates of exposure to volcanic hazards across 40 volcanoes - in user-friendly format. Results highlight that the island of Java in Indonesia has the highest median exposure to volcanic hazards, with Merapi consistently ranking as the highest threat volcano. Hazard seasonality, as a result of varying wind conditions affecting tephra dispersal, leads to increased exposure values during the peak rainy season (January, February) in Java, but the peak dry season (January, February, March) in the Philippines. A key aim of our study was to highlight volcanoes that may have been overlooked, perhaps because they are not frequently or recently active, but that have the potential to affect large numbers of people and assets. It is not intended to replace official hazard and risk information provided by the individual country or volcano organisations. This study and the tools developed provide a road map for future multi-source regional volcanic exposure assessments, with the possibility to extend the assessment to other geographic regions and/or towards impact and loss.

Narrow is the Gate to Utopia

Moreana ◽  
2012 ◽  
Vol 49 (Number 187- (1-2) ◽  
pp. 207-226
Author(s):  
Marie-Claire Phélippeau
Keyword(s):  
Social Construction ◽  
Free Will ◽  
Religious Toleration ◽  
Individual Liberty ◽  
The Reformation ◽  
The Individual ◽  
And Function

This study examines the notions of pleasure, individual liberty and consensus in Thomas More’s Utopia. The paradox inherent in Utopia, written before the Reformation, is especially visible in the affirmation of religious toleration coexisting with the need for a strict supervision of the citizens. The dream of an ideal republic is based on a Pauline vision of man which defines the individual mainly as a sinner. Consequently, it is the duty of the republic’s rulers to guide the citizens and establish a consensus. This study tries to determine the part left to the individual’s free will and examines the nature and function of the structures that are supposed to ensure the happiness of each one and of the whole community. The notion of moral hierarchy is asserted as the linchpin of the Utopian social construction.

Plant hormones, plant growth regulators

2014 ◽  
Vol 155 (26) ◽  
pp. 1011-1018 ◽  
Author(s):  
György Végvári ◽  
Edina Vidéki
Keyword(s):  
Nervous System ◽  
Growth And Development ◽  
Large Scale ◽  
Essential Role ◽  
Higher Plants ◽  
Structure And Function ◽  
Wide Sense ◽  
Large Scale Integration ◽  
Scale Integration ◽  
And Function

Plants seem to be rather defenceless, they are unable to do motion, have no nervous system or immune system unlike animals. Besides this, plants do have hormones, though these substances are produced not in glands. In view of their complexity they lagged behind animals, however, plant organisms show large scale integration in their structure and function. In higher plants, such as in animals, the intercellular communication is fulfilled through chemical messengers. These specific compounds in plants are called phytohormones, or in a wide sense, bioregulators. Even a small quantity of these endogenous organic compounds are able to regulate the operation, growth and development of higher plants, and keep the connection between cells, tissues and synergy beween organs. Since they do not have nervous and immume systems, phytohormones play essential role in plants’ life. Orv. Hetil., 2014, 155(26), 1011–1018.

Models, Practices and Methods of Reading: Evolution in Time and Space

2009 ◽  
pp. 59-64
Author(s):  
Yulia P. Melentyeva
Keyword(s):  
Large Scale ◽  
Social Groups ◽  
National Program ◽  
Time And Space ◽  
Lack Of Information ◽  
The Individual

In recent years as public in general and specialist have been showing big interest to the matters of reading. According to discussion and launch of the “Support and Development of Reading National Program”, many Russian libraries are organizing the large-scale events like marathons, lecture cycles, bibliographic trainings etc. which should draw attention of different social groups to reading. The individual forms of attraction to reading are used much rare. To author’s mind the main reason of such an issue has to be the lack of information about forms and methods of attraction to reading.

Computational Approaches to Predict the Non-canonical DNAs

2019 ◽  
Vol 14 (6) ◽  
pp. 470-479 ◽  
Author(s):  
Nazia Parveen ◽  
Amen Shamim ◽  
Seunghee Cho ◽  
Kyeong Kyu Kim
Keyword(s):  
Computational Methods ◽  
Genetic Instability ◽  
Computational Prediction ◽  
Structure And Function ◽  
Sequence Motifs ◽  
Computational Approaches ◽  
Functional Roles ◽  
And Function ◽  
Genetic Events ◽  
Insight Into

Background: Although most nucleotides in the genome form canonical double-stranded B-DNA, many repeated sequences transiently present as non-canonical conformations (non-B DNA) such as triplexes, quadruplexes, Z-DNA, cruciforms, and slipped/hairpins. Those noncanonical DNAs (ncDNAs) are not only associated with many genetic events such as replication, transcription, and recombination, but are also related to the genetic instability that results in the predisposition to disease. Due to the crucial roles of ncDNAs in cellular and genetic functions, various computational methods have been implemented to predict sequence motifs that generate ncDNA. Objective: Here, we review strategies for the identification of ncDNA motifs across the whole genome, which is necessary for further understanding and investigation of the structure and function of ncDNAs. Conclusion: There is a great demand for computational prediction of non-canonical DNAs that play key functional roles in gene expression and genome biology. In this study, we review the currently available computational methods for predicting the non-canonical DNAs in the genome. Current studies not only provide an insight into the computational methods for predicting the secondary structures of DNA but also increase our understanding of the roles of non-canonical DNA in the genome.

scholarly journals Adolescent and adult laryngotracheal stenosis: a review

2021 ◽  
Vol 37 (1) ◽  
Author(s):  
Gerhard Johan Klopper ◽  
Oladele Vincent Adeniyi ◽  
Kate Stephenson
Keyword(s):  
Intensive Care ◽  
Past Century ◽  
Main Body ◽  
Laryngotracheal Stenosis ◽  
Airway Protection ◽  
Interventional Pulmonology ◽  
The Past ◽  
Airway Emergency ◽  
The Individual ◽  
And Function

Abstract Background The larynx has multiple composite functions which include phonation, airway protection, and sensory control of respiration. Stenosis of the larynx and trachea were first recorded by O’Dwyer in 1885 and by Colles in 1886, respectively. Initially, the aetiology of laryngotracheal stenosis was predominantly infective. Currently, the leading cause is iatrogenic injury to the laryngotracheal complex secondary to prolonged ventilation in an intensive care unit. Main body Laryngotracheal stenosis is a complex and diverse disease. It poses a major challenge to the surgeon and can present as an airway emergency. Management typically demands the combined involvement of various disciplines including otorhinolaryngology, cardiothoracic surgery, anaesthesiology, interventional pulmonology, and radiology. Both the disease and its management can impact upon respiration, voice, and swallowing. The incidence of iatrogenic laryngotracheal stenosis has reflected the evolution of airway and intensive care whilst airway surgery has advanced concurrently over the past century. Correction of laryngotracheal stenosis requires expansion of the airway lumen; this is achieved by either endoscopic or open surgery. We review the relevant basic science, aetiopathogenesis, diagnosis, management, and treatment outcomes of LTS. Conclusion The choice of surgical procedure in the management of laryngotracheal stenosis is often dictated by the individual anatomy and function of the larynx and trachea, together with patient factors and available facilities. Regardless of how the surgeon chooses to approach these lesions, prevention of iatrogenic laryngotracheal damage remains of primary importance.

scholarly journals Accessible Routes Integrating Data from Multiple Sources

2020 ◽  
Vol 10 (1) ◽  
pp. 7
Author(s):  
Miguel R. Luaces ◽  
Jesús A. Fisteus ◽  
Luis Sánchez-Fernández ◽  
Mario Munoz-Organero ◽  
Jesús Balado ◽  
...  
Keyword(s):  
Information System ◽  
Data Model ◽  
Large Scale ◽  
Heterogeneous Data ◽  
Multiple Sources ◽  
Heterogeneous Data Sources ◽  
Different Types ◽  
Software Sensors ◽  
The City

Providing citizens with the ability to move around in an accessible way is a requirement for all cities today. However, modeling city infrastructures so that accessible routes can be computed is a challenge because it involves collecting information from multiple, large-scale and heterogeneous data sources. In this paper, we propose and validate the architecture of an information system that creates an accessibility data model for cities by ingesting data from different types of sources and provides an application that can be used by people with different abilities to compute accessible routes. The article describes the processes that allow building a network of pedestrian infrastructures from the OpenStreetMap information (i.e., sidewalks and pedestrian crossings), improving the network with information extracted obtained from mobile-sensed LiDAR data (i.e., ramps, steps, and pedestrian crossings), detecting obstacles using volunteered information collected from the hardware sensors of the mobile devices of the citizens (i.e., ramps and steps), and detecting accessibility problems with software sensors in social networks (i.e., Twitter). The information system is validated through its application in a case study in the city of Vigo (Spain).

scholarly journals PEDRERA. Positive Energy District Renovation Model for Large Scale Actions

Energies ◽  
2021 ◽  
Vol 14 (10) ◽  
pp. 2833
Author(s):  
Paolo Civiero ◽  
Jordi Pascual ◽  
Joaquim Arcas Abella ◽  
Ander Bilbao Figuero ◽  
Jaume Salom
Keyword(s):  
Simulation Model ◽  
Performance Indicators ◽  
Large Scale ◽  
Key Performance Indicators ◽  
Positive Energy ◽  
Design Phase ◽  
Multiple Sources ◽  
Reliable Prediction ◽  
Sensitive Analysis ◽  
Web Platform

In this paper, we provide a view of the ongoing PEDRERA project, whose main scope is to design a district simulation model able to set and analyze a reliable prediction of potential business scenarios on large scale retrofitting actions, and to evaluate the overall co-benefits resulting from the renovation process of a cluster of buildings. According to this purpose and to a Positive Energy Districts (PEDs) approach, the model combines systemized data—at both building and district scale—from multiple sources and domains. A sensitive analysis of 200 scenarios provided a quick perception on how results will change once inputs are defined, and how attended results will answer to stakeholders’ requirements. In order to enable a clever input analysis and to appraise wide-ranging ranks of Key Performance Indicators (KPIs) suited to each stakeholder and design phase targets, the model is currently under the implementation in the urbanZEB tool’s web platform.

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