scholarly journals Subsoil arbuscular mycorrhizal fungal communities in arable soil differ from those in topsoil

2017 ◽  
Author(s):  
Moisés A. Sosa-Hernández ◽  
Julien Roy ◽  
Stefan Hempel ◽  
Timo Kautz ◽  
Ulrich Köpke ◽  
...  
Keyword(s):  
Community Structure ◽  
Mycorrhizal Fungi ◽  
Potential Role ◽  
Arbuscular Mycorrhizal ◽  
Fungal Communities ◽  
Operational Taxonomic Units ◽  
Family Level ◽  
Amf Communities ◽  
Arbuscular Mycorrhizal Fungal

AbstractArbuscular mycorrhizal fungi are recognized as important drivers of plant health and productivity in agriculture but very often existing knowledge is limited to the topsoil. With growing interest in the role of subsoil in sustainable agriculture, we used high-throughput Illumina sequencing on a set of samples encompassing drilosphere, rhizosphere and bulk soil, in both top- and subsoil. Our results show subsoil AMF communities harbor unique Operational Taxonomic Units (OTUs) and that both soil depths differ in community structure both at the OTU and family level. Our results emphasize the distinctness of subsoil AMF communities and the potential role of subsoil as a biodiversity reservoir.

Clary sage cultivation and mycorrhizal inoculation influence rhizosphere fungal community structure over time in a trace-element polluted site

2021 ◽  
Author(s):  
Robin Raveau ◽  
Joël Fontaine ◽  
Mohamed Hijri ◽  
Anissa Lounès Hadj-Sahraoui
Keyword(s):  
Community Structure ◽  
Mycorrhizal Fungi ◽  
Arbuscular Mycorrhizal ◽  
Fungal Communities ◽  
Rhizospheric Soil ◽  
Polluted Soils ◽  
Salvia Sclarea ◽  
Fungal Microbiota ◽  
Amf Communities ◽  
Over Time

<p>Fungal community in the soil plays a central role in natural systems and agroecosystems, therefore it attracted much research interests. However, the fungal microbiota of aromatic plants, such as Salvia sclarea L., especially in trace-element (TE) polluted conditions and within the framework of phytomanagement approaches, remains unexplored. The presence of high concentrations of TE in the soil is likely to negatively affect not only microbial diversity and community structures, but also plant establishment and growth. The objective of this study is to investigate the soil fungal and arbuscular mycorrhizal fungi (AMF) community structure and their changes over time in TE-polluted soils in the vicinity of a former lead smelter and under the cultivation of clary sage. We used Illumina MiSeq amplicon sequencing to evaluate the effects of in situ clary sage cultivation during two successive years, combined or not with an exogenous AMF inoculation, on the rhizospheric soil and root fungal communities. We obtained 1239 and 569 fungal amplicon sequence variants (ASV) respectively in the rhizospheric soil and roots of S. sclarea in TE-polluted conditions. Remarkably, 69 AMF species were detected in our experimental site, belonging to 12 AMF genera. Besides, the inoculation treatment significantly shaped the fungal communities in soil, and increased the number of AMF ASVs in clary sage roots. In addition, successive years of clary sage cultivation also significantly shaped both fungal and AMF communities in the soil and root biotopes. Our data provide new insights on fungal and AMF communities in the rhizospheric soil and roots of clary sage grown in TE-polluted agricultural soil.</p><p><strong>Keywords</strong>: Trace Elements-polluted soils, fungal microbiota, Salvia sclarea, arbuscular mycorrhizal fungi</p>

scholarly journals Micro-Landscape Dependent Changes in Arbuscular Mycorrhizal Fungal Community Structure

2021 ◽  
Vol 11 (11) ◽  
pp. 5297
Author(s):  
Stavros D. Veresoglou ◽  
Leonie Grünfeld ◽  
Magkdi Mola
Keyword(s):  
Community Structure ◽  
Mycorrhizal Fungi ◽  
Root Colonization ◽  
Environmental Parameters ◽  
Arbuscular Mycorrhizal ◽  
Fungal Community Structure ◽  
High Connectivity ◽  
Spatio Temporal ◽  
Arbuscular Mycorrhizal Fungal ◽  
Colonization Rates

The roots of most plants host diverse assemblages of arbuscular mycorrhizal fungi (AMF), which benefit the plant hosts in diverse ways. Even though we understand that such AMF assemblages are non-random, we do not fully appreciate whether and how environmental settings can make them more or less predictable in time and space. Here we present results from three controlled experiments, where we manipulated two environmental parameters, habitat connectance and habitat quality, to address the degree to which plant roots in archipelagos of high connectivity and invariable habitats are colonized with (i) less diverse and (ii) easier to predict AMF assemblages. We observed no differences in diversity across our manipulations. We show, however, that mixing habitats and varying connectivity render AMF assemblages less predictable, which we could only detect within and not between our experimental units. We also demonstrate that none of our manipulations favoured any specific AMF taxa. We present here evidence that the community structure of AMF is less responsive to spatio-temporal manipulations than root colonization rates which is a facet of the symbiosis which we currently poorly understand.

scholarly journals Mycorrhizal Fungi as Bioprotectors of Crops Against Verticillium Wilt—A Hypothetical Scenario Under Changing Environmental Conditions

Plants ◽  
2020 ◽  
Vol 9 (11) ◽  
pp. 1468
Author(s):  
Nieves Goicoechea
Keyword(s):  
Environmental Factors ◽  
Mycorrhizal Fungi ◽  
Host Plants ◽  
Current Knowledge ◽  
Water Status ◽  
Arbuscular Mycorrhizal ◽  
Hypothetical Scenario ◽  
Soil Temperatures ◽  
Amf Communities

The association that many crops can establish with the arbuscular mycorrhizal fungi (AMF) present in soils can enhance the resistance of the host plants against several pathogens, including Verticillium spp. The increased resistance of mycorrhizal plants is mainly due to the improved nutritional and water status of crops and to enhanced antioxidant metabolism and/or increased production of secondary metabolites in the plant tissues. However, the effectiveness of AMF in protecting their host plants against Verticillium spp. may vary depending on the environmental factors. Some environmental factors, such as the concentration of carbon dioxide in the atmosphere, the availability of soil water and the air and soil temperatures, are predicted to change drastically by the end of the century. The present paper discusses to what extent the climate change may influence the role of AMF in protecting crops against Verticillium-induced wilt, taking into account the current knowledge about the direct and indirect effects that the changing environment can exert on AMF communities in soils and on the symbiosis between crops and AMF, as well as on the development, incidence and impact of diseases caused by soil-borne pathogens.

scholarly journals Dynamics of arbuscular mycorrhizal fungi in relation to root colonization, spore density, and soil properties among different spreading stages of the exotic plant threeflower beggarweed (Desmodium triflorum) in a Zoysia tenuifolia lawn

Weed Science ◽  
2019 ◽  
Vol 67 (6) ◽  
pp. 689-701
Author(s):  
Xiaoge Han ◽  
Changchao Xu ◽  
Yutao Wang ◽  
Dan Huang ◽  
Qiang Fan ◽  
...  
Keyword(s):  
Arbuscular Mycorrhizal Fungi ◽  
Soil Properties ◽  
Mycorrhizal Fungi ◽  
Arbuscular Mycorrhizal ◽  
Spore Density ◽  
Invasive Weed ◽  
Weed Invasion ◽  
Operational Taxonomic Units ◽  
Amf Communities ◽  
Spore Densities

AbstractWeed invasion is a prevailing problem in modestly managed lawns. Less attention has been given to the exploration of the role of arbuscular mycorrhizal fungi (AMF) under different invasion pressures from lawn weeds. We conducted a four-season investigation into a Zoysia tenuifolia Willd. ex Thiele (native turfgrass)–threeflower beggarweed [Desmodium triflorum (L.) DC.] (invasive weed) co-occurring lawn. The root mycorrhizal colonizations of the two plants, the soil AM fungal communities and the spore densities under five different coverage levels of D. triflorum were investigated. Desmodium triflorum showed significantly higher root hyphal and vesicular colonizations than those of Z. tenuifolia, while the root colonizations of both species varied significantly among seasons. The increased coverage of D. triflorum resulted in the following effects: (1) the spore density initially correlated with mycorrhizal colonizations of Z. tenuifolia but gradually correlated with those of D. triflorum. (2) Correlations among soil properties, spore densities, and mycorrhizal colonizations were more pronounced in the higher coverage levels. (3) Soil AMF community compositions and relative abundances of AMF operational taxonomic units changed markedly in response to the increased invasion pressure. The results provide strong evidence that D. triflorum possessed a more intense AMF infection than Z. tenuifolia, thus giving rise to the altered host contributions to sporulation, soil AMF communities, relations of soil properties, spore densities, and root colonizations of the two plants, all of which are pivotal for the successful invasion of D. triflorum in lawns.

Root-colonizing and soil-borne communities of arbuscular mycorrhizal fungi in a temperate forest understorey

Botany ◽  
2014 ◽  
Vol 92 (4) ◽  
pp. 277-285 ◽  
Author(s):  
Ülle Saks ◽  
John Davison ◽  
Maarja Öpik ◽  
Martti Vasar ◽  
Mari Moora ◽  
...  
Keyword(s):  
Plant Species ◽  
Mycorrhizal Fungi ◽  
Plant Root ◽  
Arbuscular Mycorrhizal ◽  
Small Subunit ◽  
Plant Roots ◽  
Individual Plant ◽  
Amf Communities ◽  
Arbuscular Mycorrhizal Fungal ◽  
Phylogenetic Dispersion

We analyzed arbuscular mycorrhizal fungal (AMF) communities in plant root samples from a natural forest ecosystem — a primeval forest in Järvselja, Estonia. AMF small-subunit (SSU) ribosomal RNA genes were subjected to 454-pyrosequencing and BLAST-based taxonomic identification. Seventy-six AMF sequence groups (virtual taxa, VT) were identified from plant roots. Taken together with seven additional VT recorded in an earlier investigation of soil AMF communities at the site, this represents the highest number of AMF reported from a single ecosystem to date. The six study plant species hosted similar AMF communities. However, AMF community composition in plant roots was significantly different from that in soil and considerably more VT were retrieved from roots than from soil. AMF VT identified from plant roots as a whole and from individual plant species were frequently phylogenetically clustered compared with local and global taxon pools, suggesting that nonrandom assembly processes, notably habitat filtering, may have shaped fungal assemblages. In contrast, the phylogenetic dispersion of AMF communities in soil did not differ from random subsets of the local or global taxon pools.

Arbuscular mycorrhizal fungal succession in a long-lived perennial

Botany ◽  
2014 ◽  
Vol 92 (4) ◽  
pp. 313-320 ◽  
Author(s):  
Miranda M. Hart ◽  
Monika Gorzelak ◽  
Diane Ragone ◽  
Susan J. Murch
Keyword(s):  
High Throughput Sequencing ◽  
Selective Pressure ◽  
Arbuscular Mycorrhizal ◽  
Am Fungi ◽  
Fungal Communities ◽  
Artocarpus Altilis ◽  
Host Identity ◽  
Arbuscular Mycorrhizal Fungal ◽  
Insight Into

It is difficult to understand why arbuscular mycorrhizal (AM) fungal communities change over time. The role of host identity confounds our understanding of successional changes in AM fungal communities because hosts exert strong selective pressure on their root-associated microbes. In this study we looked at the AM fungi associated with a long-lived perennial breadfruit (Artocarpus altilis (Parkinson) Fosberg) to see how AM communities change over the life span of a single, long-lived host. Using 454 high-throughput sequencing, we found evidence that older trees had more AM fungal taxa than younger trees and were associated with different AM fungal communities, but these differences were not apparent early in the life cycle. Older trees were dominated by species of Rhizophagus, whereas younger trees and genets were dominated by species of Glomus. Some taxa were only detected in older trees (e.g., Funneliformis) or genets (e.g., Racocetra and Scutellospora), indicating that certain AM fungal taxa may serve as “indicators” of the successional age of the fungal community. These results provide important information about a poorly studied system and give insight into how AM communities change over longer time scales.

scholarly journals Differential responses of arbuscular mycorrhizal fungal communities to long-term fertilization in the wheat rhizosphere and root endosphere

2021 ◽  
Author(s):  
Yuying Ma ◽  
Huanchao Zhang ◽  
Daozhong Wang ◽  
Xisheng Guo ◽  
Teng Yang ◽  
...  
Keyword(s):  
Arbuscular Mycorrhizal Fungi ◽  
Mycorrhizal Fungi ◽  
Rhizosphere Soil ◽  
Organic Amendments ◽  
Alpha Diversity ◽  
Arbuscular Mycorrhizal ◽  
Mineral Fertilization ◽  
Amf Communities ◽  
Arbuscular Mycorrhizal Fungal

Arbuscular mycorrhizal fungi (AMF) provide essential nutrients to crops and are critically impacted by fertilization in agricultural ecosystems. Understanding shifts in AMF communities in and around crop roots under different fertilization regimes can provide important lessons for improving agricultural production and sustainability. Here, we compared the responses of AMF communities in the rhizosphere (RS) and root endosphere (ES) of wheat ( Triticum aestivum ) to different fertilization treatments: Non-fertilization (Control), mineral fertilization only (NPK), mineral fertilization plus wheat straw (NPKS), and mineral fertilization plus cow manure (NPKM). We employed high-throughput amplicon sequencing and investigated the diversity, community composition, and network structure of AMF communities to assess their responses to fertilization. Our results elucidated that AMF communities in the RS and ES respond differently to fertilization schemes. Long-term NPK application decreased the RS AMF alpha diversity significantly, whereas additional organic amendments (straw or manure) had no effect. Contrastingly, NPK fertilization increased the ES AMF alpha diversity significantly, while additional organic amendments decreased it significantly. The effect of different fertilization schemes on AMF network complexity in the RS and ES were similar to their effects on alpha diversity. Changes to AMF communities in the RS and ES correlated mainly with the pH and phosphorus level of the rhizosphere soil under long-term inorganic and organic fertilization regimes. We suggest that the AMF community in the roots should be given more consideration when studying the effects of fertilization regimes on AMF in agroecosystems. Importance Arbuscular mycorrhizal fungi are an integral component of rhizospheres, bridging the soil and plant systems and are highly sensitive to fertilization. However, surprisingly little is known about how the response differs between the roots and the surrounding soil. Decreasing arbuscular mycorrhizal fungal diversity under fertilization has been reported, implying a potential reduction in the mutualism between plants and arbuscular mycorrhizal fungi. However, we found opposing responses to long-term fertilization managements of arbuscular mycorrhizal fungi in the wheat roots and rhizosphere soil. These results suggested that changes in the arbuscular mycorrhizal fungal community in soils do not reflect those in the roots, highlighting that the root arbuscular mycorrhizal fungal community is pertinent to understand arbuscular mycorrhizal fungi and their crop hosts’ responses to anthropogenic influences.

A review of fungi associated with Arabian desert soils

Nova Hedwigia ◽  
2020 ◽  
Author(s):  
Fuad Ameen ◽  
Steven L. Stephenson ◽  
Saleh Al Nadhari ◽  
Mohamed A. Yassin
Keyword(s):  
Mycorrhizal Fungi ◽  
Biomedical Applications ◽  
Arbuscular Mycorrhizal ◽  
Fungal Communities ◽  
Desert Soils ◽  
Functional Studies ◽  
Future Challenges ◽  
Metagenomics Data ◽  
Harsh Conditions

e microbial communities associated with desert soils are poorly studied. Moleculartechniques have revealed that these communities are more diverse than previously thought. In thisreview, we have assembled and synthesized available literature on microbiological research directedtowards Arabian Desert soils, with primary emphasis on fungi. Recent molecular techniqueshave generated metagenomics data indicating a relatively high diversity of fungi in deserts, includingthe Arabian Desert. However, most publications dealing with Arabian Desert soils have reportedonly fungi that can be cultured, identified either molecularly or morphologically. As such,the fungal communities and their diversity are still largely unknown. Most functional studies in theArabian Desert deal with the role of arbuscular mycorrhizal fungi in improving plants’ survival inthe harsh conditions of desert. In addition, desert fungi might be utilized in developing sustainableagriculture and biomedical applications. Because of future challenges related to desertification andclimate change, there is a need for additional studies on heat and drought resistant fungi and thefunctions of these organisms in deserts.

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