scholarly journals Enhancer identification and activity evaluation in the red flour beetle, Tribolium castaneum

2017 ◽  
Author(s):  
Yi-Ting Lai ◽  
Kevin D. Deem ◽  
Ferran Borràs-Castells ◽  
Nagraj Sambrani ◽  
Heike Rudolf ◽  
...  
Keyword(s):  
Tribolium Castaneum ◽  
Morphological Diversity ◽  
Regulatory Elements ◽  
Model Systems ◽  
Red Flour Beetle ◽  
Open Chromatin ◽  
Enhancer Activity ◽  
Flour Beetle ◽  
Genome Wide ◽  
Enhancer Identification

ABSTRACTEvolution of cis-properties (such as enhancers) often plays an important role in the production of diverse morphology. However, a mechanistic understanding is often limited by the absence of methods to study enhancers in species outside of established model systems. Here, we sought to establish methods to identify and test enhancer activity in the red flour beetle, Tribolium castaneum. To identify possible enhancer regions, we first obtained genome-wide chromatin profiles from various tissues and stages of Tribolium via FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements)-sequencing. Comparison of these profiles revealed a distinct set of open chromatin regions in each tissue and stage. Second, we established the first reporter assay system that works in both Drosophila and Tribolium, using nubbin in the wing and hunchback in the embryo as case studies. Together, these advances will be useful to study the evolution of cis-language and morphological diversity in Tribolium and other insects.

scholarly journals A genome-wide inventory of neurohormone GPCRs in the red flour beetle Tribolium castaneum

2008 ◽  
Vol 29 (1) ◽  
pp. 142-165 ◽  
Author(s):  
Frank Hauser ◽  
Giuseppe Cazzamali ◽  
Michael Williamson ◽  
Yoonseong Park ◽  
Bin Li ◽  
...  
Keyword(s):  
Tribolium Castaneum ◽  
Red Flour Beetle ◽  
Flour Beetle ◽  
Genome Wide ◽  
A Genome

scholarly journals Enhancer identification and activity evaluation in the red flour beetle,Tribolium castaneum

Development ◽  
2018 ◽  
Vol 145 (7) ◽  
pp. dev160663 ◽  
Author(s):  
Yi-Ting Lai ◽  
Kevin D. Deem ◽  
Ferran Borràs-Castells ◽  
Nagraj Sambrani ◽  
Heike Rudolf ◽  
...  
Keyword(s):  
Tribolium Castaneum ◽  
Red Flour Beetle ◽  
Flour Beetle ◽  
Activity Evaluation ◽  
Enhancer Identification

A Novel Method for the Analysis of Volatile Organic Compounds (VOCs) from Red Flour Beetle Tribolium castaneum (H.) using Headspace-SPME Technology

2020 ◽  
Vol 16 (4) ◽  
pp. 404-412 ◽  
Author(s):  
Ihab Alnajim ◽  
Manjree Agarwal ◽  
Tao Liu ◽  
YongLin Ren
Keyword(s):  
Volatile Organic Compounds ◽  
Organic Compounds ◽  
Tribolium Castaneum ◽  
Solid Phase ◽  
Chemical Signals ◽  
Red Flour Beetle ◽  
Specific Chemical ◽  
Flour Beetle ◽  
Volatile Organic ◽  
Spme Fibre

Background: The red flour beetle, Tribolium castaneum (Herbst) (Coleoptera: Tenebrionidae) is one of the world’s most serious stored grain insect pests. A method of early and rapid identification of red flour beetle in stored products is urgently required to improve control options. Specific chemical signals identified as Volatile Organic Compounds (VOCs) that are released by the beetle can serve as biomarkers. Methods: The Headspace Solid Phase Microextraction (HS-SPME) technique and the analytical conditions with GC and GCMS were optimised and validated for the determination of VOCs released from T. castaneum. Results: The 50/30 μm DVB/CAR/PDMS SPME fibre was selected for extraction of VOCs from T. castaneum. The efficiency of extraction of VOCs was significantly affected by the extraction time, temperature, insect density and type of SPME fibre. Twenty-three VOCs were extracted from insects in 4 mL flask at 35 ± 1°C for four hours of extraction and separated and identified with gas chromatography-mass spectroscopy. The major VOCs or chemical signals from T. castaneum were 1-pentadecene, p-Benzoquinone, 2-methyl- and p-Benzoquinone, 2-ethyl. Conclusion: This study showed that HS-SPME GC technology is a robust and cost-effective method for extraction and identification of the unique VOCs produced by T. castaneum. Therefore, this technology could lead to a new approach in the timely detection of T. castaneum and its subsequent treatment.

scholarly journals Woot, an Active Gypsy-Class Retrotransposon in the Flour Beetle, Tribolium castaneum, is Associated With a Recent Mutation

Genetics ◽  
1996 ◽  
Vol 143 (1) ◽  
pp. 417-426
Author(s):  
Richard W Beeman ◽  
M Scott Thomson ◽  
John M Clark ◽  
Marco A DeCamillis ◽  
Susan J Brown ◽  
...  
Keyword(s):  
Sequence Analysis ◽  
Tribolium Castaneum ◽  
Frameshift Mutation ◽  
Open Reading Frames ◽  
Red Flour Beetle ◽  
Intron Sequence ◽  
Coding Region ◽  
Long Terminal Repeats ◽  
Flour Beetle ◽  
Reading Frames

Abstract A recently isolated, lethal mutation of the homeotic Abdominal gene of the red flour beetle Tribolium castaneum is associated with an insertion of a novel retrotransposon into an intron. Sequence analysis indicates that this retrotransposon, named Woot, is a member of the gypsy family of mobile elements. Most strains of T. castaneum appear to harbor ~25-35 copies of Woot per genome. Woot is composed of long terminal repeats of unprecedented length (3.6 kb each), flanking an internal coding region 5.0 kb in length. For most copies of Woot, the internal region includes two open reading frames (ORFs) that correspond to the gag and pol genes of previously described retrotransposons and retroviruses. The copy of Woot inserted into Abdominal bears an apparent single frameshift mutation that separates the normal second ORF into two. Woot does not appear to generate infectious virions by the criterion that no envelop gene is discernible. The association of Woot with a recent mutation suggests that this retroelement is currently transpositionally active in at least some strains.

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