scholarly journals Genomic and transcriptomic signals of thermal tolerance in heat-tolerant corals (Platygyra daedalea) of the Arabian/Persian Gulf

2017 ◽  
Author(s):  
Nathan L. Kirk ◽  
Emily J. Howells ◽  
David Abrego ◽  
John A. Burt ◽  
Eli Meyer

AbstractScleractinian corals occur in tropical regions near their upper thermal limits, and are severely threatened by rising ocean temperatures. Ocean warming leads to loss of symbiotic algae (Symbiodinium), reduced fitness for the coral host, and degradation of the reef. However, several recent studies have shown that natural populations of corals harbor genetic variation in thermal tolerance that may support adaptive responses to warming. Here we’ve extended these approaches to study heat tolerance of corals in the Persian/Arabian Gulf, where heat-tolerant local populations have adapted to warm summer temperatures (>36°C). To evaluate whether selection has depleted genetic variation in thermal tolerance, estimate the potential for future adaptive responses, and understand the functional basis for these corals’ unusual heat tolerance, we measured thermal tolerance using controlled crosses in the Gulf coral Platygyra daedalea. We found that heat tolerance is highly heritable in this population (0.487-0.748), suggesting substantial potential for adaptive responses to selection for thermal tolerance. To identify genetic markers associated with this variation, we conducted genomewide SNP genotyping in parental corals and tested for relationships between paternal genotype and thermal tolerance of the offspring. We found that multilocus SNP genotypes explained a large fraction of variation in thermal tolerance in these crosses (69%). To investigate the functional basis of these differences in thermal tolerance, we profiled transcriptional responses in tolerant and susceptible families, revealing substantial sire effects on transcriptional responses to thermal stress. We also studied sequence variation in these expressed sequences, identifying alleles and functional groups associated with thermal tolerance. Our findings demonstrate that corals in these populations harbor extensive genetic variation in thermal tolerance, and these heat-tolerant phenotypes differ in both gene sequences and transcriptional stress responses from their susceptible counterparts.

2017 ◽  
Author(s):  
Katherine Dziedzic ◽  
Holland Elder ◽  
Hannah F Tavalire ◽  
Eli Meyer

Reef-building corals are highly sensitive to rising ocean temperatures, and substantial adaptation will be required for corals and the ecosystems they support to persist in changing ocean conditions. Genetic variation that might support adaptive responses has been measured in larval stages of some corals, but these estimates remain unavailable for adult corals and the functional basis of this variation remains unclear. In this study, we focused on the potential for adaptation in Orbicella faveolata, a dominant reef-builder in the Caribbean. We conducted thermal stress experiments using corals collected from natural populations in Bocas del Toro, Panama, and used multilocus SNP genotypes to estimate genetic relatedness among samples. This allowed us to estimate narrow-sense heritability of variation in bleaching responses, revealing that variation in these responses was highly heritable (h2=0.58). This suggests substantial potential for adaptive responses to warming by natural populations of O. faveolata in this region. We further investigated the functional basis for this variation using genomic and transcriptomic approaches. We used a publicly available genetic linkage map and genome assembly to map markers associated with bleaching responses, identifying twelve markers associated with variation in bleaching responses. We also profiled gene expression in corals with contrasting bleaching phenotypes, uncovering substantial differences in transcriptional stress responses between heat-tolerant and heat-susceptible corals. Together, our findings contribute to the growing body of evidence that natural populations of corals possess genetic variation in thermal stress responses that may potentially support adaptive responses to rising ocean temperatures.


2019 ◽  
Vol 116 (49) ◽  
pp. 24712-24718 ◽  
Author(s):  
Bo Zhang ◽  
Sean P. Leonard ◽  
Yiyuan Li ◽  
Nancy A. Moran

The thermal tolerance of an organism limits its ecological and geographic ranges and is potentially affected by dependence on temperature-sensitive symbiotic partners. Aphid species vary widely in heat sensitivity, but almost all aphids are dependent on the nutrient-provisioning intracellular bacterium Buchnera, which has evolved with aphids for 100 million years and which has a reduced genome potentially limiting heat tolerance. We addressed whether heat sensitivity of Buchnera underlies variation in thermal tolerance among 5 aphid species. We measured how heat exposure of juvenile aphids affects later survival, maturation time, and fecundity. At one extreme, heat exposure of Aphis gossypii enhanced fecundity and had no effect on the Buchnera titer. In contrast, heat suppressed Buchnera populations in Aphis fabae, which suffered elevated mortality, delayed development and reduced fecundity. Likewise, in Acyrthosiphon kondoi and Acyrthosiphon pisum, heat caused rapid declines in Buchnera numbers, as well as reduced survivorship, development rate, and fecundity. Fecundity following heat exposure is severely decreased by a Buchnera mutation that suppresses the transcriptional response of a gene encoding a small heat shock protein. Similarly, absence of this Buchnera heat shock gene may explain the heat sensitivity of Ap. fabae. Fluorescent in situ hybridization revealed heat-induced deformation and shrinkage of bacteriocytes in heat-sensitive species but not in heat-tolerant species. Sensitive and tolerant species also differed in numbers and transcriptional responses of heat shock genes. These results show that shifts in Buchnera heat sensitivity contribute to host variation in heat tolerance.


2017 ◽  
Author(s):  
Brent L. Lockwood ◽  
Tarun Gupta ◽  
Rosemary Scavotto

AbstractMany terrestrial ectothermic species exhibit limited variation in upper thermal tolerance across latitude. However, these trends may not signify limited adaptive capacity to increase thermal tolerance in the face of climate change. Instead, thermal tolerance may be similar among populations because behavioral thermoregulation by mobile organisms or life stages may buffer natural selection for thermal tolerance. We compared thermal tolerance of adults and embryos among natural populations of Drosophila melanogaster from a broad range of thermal habitats around the globe to assess natural variation of thermal tolerance in mobile vs. immobile life stages. We found no variation among populations in adult thermal tolerance, but embryonic thermal tolerance was higher in tropical strains than in temperate strains. Average maximum temperature of the warmest month of the year predicted embryonic thermal tolerance in tropical but not temperate sites. We further report that embryos live closer to their upper thermal limits than adultso—i.e., thermal safety margins are smaller for embryos than adults. F1 hybrid embryos from crosses between temperate and tropical populations had thermal tolerance that matched that of tropical embryos, suggesting dominance of heat-tolerant alleles. Together our findings suggest that thermal selection has led to divergence in embryonic thermal tolerance but that selection for divergent thermal tolerance may be limited in adults. Further, our results suggest that thermal traits should be measured across life stages in order to better predict adaptive limits.Impact SummaryClimate change may threaten the extinction of many ectothermic species, unless populations can evolutionarily adapt to rising temperatures. Natural selection should favor individuals with higher heat tolerances in hotter environments. But recent studies have found that individuals from hot and cold places often have similar heat tolerances. This pattern may indicate that the evolution of heat tolerance is constrained. If this were true, then it would have dire consequences for species persistence under novel thermal conditions.An alternative explanation for lack of variation in heat tolerance is that mobile organisms don’t need higher heat tolerances to survive in hotter places. The majority of studies have focused on heat tolerance of the adult life stage. Yet, adults in many species are mobile organisms that can avoid extreme heat by seeking shelter in cooler microhabitats (e.g., shaded locations). In contrast, immobile life stages (e.g., insect eggs) cannot behaviorally avoid extreme heat. Thus, mobile and immobile life stages may face different thermal selection pressures that lead to disparate patterns of thermal adaptation across life stages.Here, we compared heat tolerances of fruit fly adults and eggs (Drosophila melanogaster) from populations in temperate North America and tropical locations around the globe. Consistent with previous studies, we found no differences among populations in adult heat tolerance. However, eggs from tropical flies were consistently more heat tolerant than eggs from North American flies. Further, eggs had lower heat tolerance than adults. Consequently, fly eggs in the hotter tropics may experience heat death more frequently than adult flies later in life. This may explain why patterns of divergence in heat tolerance were decoupled across life stages. These patterns indicate that thermal adaptation may be life-stage-specific and suggest that future work should characterize thermal traits across life stages to better understand the evolution of thermal limits.


2019 ◽  
Vol 116 (21) ◽  
pp. 10586-10591 ◽  
Author(s):  
Megan K. Morikawa ◽  
Stephen R. Palumbi

Ecological restoration of forests, meadows, reefs, or other foundational ecosystems during climate change depends on the discovery and use of individuals able to withstand future conditions. For coral reefs, climate-tolerant corals might not remain tolerant in different environments because of widespread environmental adjustment of coral physiology and symbionts. Here, we test if parent corals retain their heat tolerance in nursery settings, if simple proxies predict successful colonies, and if heat-tolerant corals suffer lower growth or survival in normal settings. Before the 2015 natural bleaching event in American Samoa, we set out 800 coral fragments from 80 colonies of four species selected by prior tests to have a range of intraspecific natural heat tolerance. After the event, nursery stock from heat-tolerant parents showed two to three times less bleaching across species than nursery stock from less tolerant parents. They also retained higher individual genetic diversity through the bleaching event than did less heat-tolerant corals. The three best proxies for thermal tolerance were response to experimental heat stress, location on the reef, and thermal microclimate. Molecular biomarkers were also predictive but were highly species specific. Colony genotype and symbiont genus played a similarly strong role in predicting bleaching. Combined, our results show that selecting for host and symbiont resilience produced a multispecies coral nursery that withstood multiple bleaching events, that proxies for thermal tolerance in restoration can work across species and be inexpensive, and that different coral clones within species reacted very differently to bleaching.


2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Joanne M. Bennett ◽  
Jennifer Sunday ◽  
Piero Calosi ◽  
Fabricio Villalobos ◽  
Brezo Martínez ◽  
...  

AbstractUnderstanding how species’ thermal limits have evolved across the tree of life is central to predicting species’ responses to climate change. Here, using experimentally-derived estimates of thermal tolerance limits for over 2000 terrestrial and aquatic species, we show that most of the variation in thermal tolerance can be attributed to a combination of adaptation to current climatic extremes, and the existence of evolutionary ‘attractors’ that reflect either boundaries or optima in thermal tolerance limits. Our results also reveal deep-time climate legacies in ectotherms, whereby orders that originated in cold paleoclimates have presently lower cold tolerance limits than those with warm thermal ancestry. Conversely, heat tolerance appears unrelated to climate ancestry. Cold tolerance has evolved more quickly than heat tolerance in endotherms and ectotherms. If the past tempo of evolution for upper thermal limits continues, adaptive responses in thermal limits will have limited potential to rescue the large majority of species given the unprecedented rate of contemporary climate change.


2021 ◽  
Vol 9 (2) ◽  
pp. 249
Author(s):  
Thomas Schalck ◽  
Bram Van den Bergh ◽  
Jan Michiels

Fuels and polymer precursors are widely used in daily life and in many industrial processes. Although these compounds are mainly derived from petrol, bacteria and yeast can produce them in an environment-friendly way. However, these molecules exhibit toxic solvent properties and reduce cell viability of the microbial producer which inevitably impedes high product titers. Hence, studying how product accumulation affects microbes and understanding how microbial adaptive responses counteract these harmful defects helps to maximize yields. Here, we specifically focus on the mode of toxicity of industry-relevant alcohols, terpenoids and aromatics and the associated stress-response mechanisms, encountered in several relevant bacterial and yeast producers. In practice, integrating heterologous defense mechanisms, overexpressing native stress responses or triggering multiple protection pathways by modifying the transcription machinery or small RNAs (sRNAs) are suitable strategies to improve solvent tolerance. Therefore, tolerance engineering, in combination with metabolic pathway optimization, shows high potential in developing superior microbial producers.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Sherzod Nigmatullayevich Rajametov ◽  
Eun Young Yang ◽  
Myeong Cheoul Cho ◽  
Soo Young Chae ◽  
Hyo Bong Jeong ◽  
...  

AbstractUnderstanding the mechanism for heat tolerance is important for the hot pepper breeding program to develop heat-tolerant cultivars in changing climate. This study was conducted to investigate physiological and biochemical parameters related to heat tolerance and to determine leaf heat damage levels critical for selecting heat-tolerant genotypes. Seedlings of two commercial cultivars, heat-tolerant ‘NW Bigarim’ (NB) and susceptible ‘Chyung Yang’ (CY), were grown in 42 °C for ten days. Photosynthesis, electrolyte conductivity, proline content were measured among seedlings during heat treatment. Photosynthetic rate was significantly reduced in ‘CY’ but not in ‘NB’ seedlings in 42 °C. Stomatal conductivity and transpiration rate was significantly higher in ‘NB’ than ‘CY’. Proline content was also significantly higher in ‘NB’. After heat treatment, leaf heat damages were determined as 0, 25, 50 and 75% and plants with different leaf heat damages were moved to a glasshouse (30–32/22–24 °C in day/night). The growth and developmental parameters were investigated until 70 days. ‘NB’ was significantly affected by leaf heat damages only in fruit yield while ‘CY’ was in fruit set, number and yield. ‘NB’ showed fast recovery after heat stress compared to ‘CY’. These results suggest that constant photosynthetic rate via increased transpiration rate as well as high proline content in heat stress condition confer faster recovery from heat damage of heat-tolerant cultivars in seedlings stages.


2018 ◽  
Vol 46 (2) ◽  
pp. 2597-2597
Author(s):  
Ahmed Sallam ◽  
Ahmed Amro ◽  
Ammar Elakhdar ◽  
Mona F. A. Dawood ◽  
Toshihiro Kumamaru ◽  
...  

Author(s):  
Sherzod Rajametov ◽  
Eun Young Yang ◽  
Myeong Cheoul Cho ◽  
Soo Young Chae ◽  
Hyo Bong Jeong ◽  
...  

Understanding the mechanism for heat tolerance is important for the hot pepper breeding program to develop heat-tolerant cultivars in changing climate. This study was conducted to investigate physiological and biochemical parameters related to heat tolerance and to determine leaf heat damage levels critical for selecting heat-tolerant genotypes. Seedlings of two commercial cultivars, heat-tolerant ‘NW Bigarim’ (NB) and susceptible ‘Chyung Yang’ (CY), were grown in 42 °C for ten days. Photosynthesis, electrolyte conductivity, proline content were measured among seedlings during heat treatment. Photosynthetic rate was significantly reduced in ‘CY’ but not in ‘NB’ seedlings in 42 °C. Stomatal conductivity and transpiration rate was significantly higher in ‘NB’ than ‘CY’. Proline content was also significantly higher in ‘NB’. After heat treatment, leaf heat damages were determined as 0, 25, 50 and 75% and plants with different leaf heat damages were moved to a glasshouse (30–32/22–24 °C in day/night). The growth and developmental parameters were investigated until 70 days. ‘NB’ was significantly affected by leaf heat damages only in fruit yield while ‘CY’ was in fruit set, number and yield. ‘NB’ showed fast recovery after heat stress compared to ‘CY’. These results suggest that constant photosynthetic rate via increased transpiration rate as well as high proline content in heat stress condition confer faster recovery from heat damage of heat-tolerant cultivars in seedlings stages.


Author(s):  
Sherzod Nigmatullayevich Rajametov ◽  
Eun Young Yang ◽  
Hyo Bong Jeong ◽  
Myeong Cheoul Cho ◽  
Soo-Young Chae ◽  
...  

High temperature seriously effects on plant vegetative and reproductive development and reduces productivity of plants, while to increase crop yield is the main target in most crop heat stress tolerance improvement breeding programs, not just survival, under high temperature. Our aim was to compare temperature stress tolerance in two commercial tomato cultivars “Dafnis” (big fruit size) and “Minichal” (cherry fruit size) to develop early screening methods and find out survival rate and physiological responses of tomato cultivars on high temperature (40°C and within 70% RH, day/night) in 4-5 true leaf seedling stage- (4LS) and identifies the linkage of heat tolerance with fruit set and leaf heat damage rates (LHD) in seedling stage with subsequent vegetative traits at recovery. Results showed that heat stress significantly affected on physiological-chemical and vegetative parameters of seedlings regardless of tomato cultivars. Survival and the threshold level of high temperature tolerance in the seedlings of cv. “Dafnis” and “Minichal” were identified on days 7 and 9, respectively. Our findings revealed that photosynthesis (PN, Gs, Ci, Tr) parameters were increased and CHL content persisted steady value in cv. “Minichal” during heat stress period, however EC and RPL rates were lower than cv. “Dafnis”. Heat stress reduced the SFW in both cultivars in seedling stage, but PH and RFW were significantly decreased in the heat tolerant cv. “Minichal”, whereas this parameters were not significantly ranged in the heat susceptible cv. “Dafnis”. Additionally, there no found linkage between vegetative parameters with decreasing of PN and CHL rates during HT of seedlings. In plants of cv. “Minichal” with LHD-25, 50 and 75% were no found significant differences in PH, whereas in cv. “Dafnis” significant differences were determined in plants with LHD-75%, and the significant differences in rates of SFW and RFW were observed in plants of cv. “Dafnis” having LHD-75% for 28 days of recovery at NT condition. Taken together, we concluded that heat stress affected on physiological parameters regardless of tolerance level, and to identify heat tolerant genotype in tomato breeding program, screening and selection genotypes have to be evaluated at the vegetative and reproductive stages with consideration fruit size types. Since we could not find linkage between heat tolerances in seedling stage with fruit set at the reproductive stage and fruit set cannot be used as a general predictor of heat tolerance.


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