scholarly journals Effects of population- and seed bank noise on neutral evolution and efficacy of natural selection

2017 ◽  
Author(s):  
Lukas Heinrich ◽  
Johannes Müller ◽  
Aurélien Tellier ◽  
Daniel Živković
Keyword(s):  
Seed Production ◽  
Genetic Drift ◽  
Seed Bank ◽  
Death Rate ◽  
Seed Banks ◽  
Neutral Evolution ◽  
Plant Fitness ◽  
Below Ground ◽  
Ground Noise ◽  
The Impact

AbstractPopulation genetics models typically consider a fixed population size and a unique selection coefficient. However, population dynamics inherently generate noise in numbers of individuals and selection acts on various components of the individuals’ fitness. In plant species with seed banks, the size of both the above- and below-ground compartments present noise depending on seed production and the state of the seed bank. We investigate if this noise has consequences on 1) the rate of genetic drift, and 2) the efficacy of selection. We consider four variants of two-allele Moran-type models defined by combinations of presence and absence of noise in above-ground and seed bank compartments. Time scale analysis and dimension reduction methods allow us to reduce the corresponding Fokker-Planck equation to a one-dimensional diffusive Moran model. We first show that if the above-ground noise classically affects the rate of genetic drift, below-ground noise reduces the diversity storage effect of the seed bank. Second, we consider that selection can act on four different components of the plant fitness: plant or seed death rate, seed production or seed germination. Our striking result is that the efficacy of selection for seed death rate or germination rate is reduced by seed bank noise, whereas selection occurring on plant death rate or seed production is not affected. We derive the expected site-frequency spectrum reflecting this heterogeneity in selection efficacy between genes underpinning different plant fitness components. Our results highlight the importance to consider the effect of ecological noise to predict the impact of seed banks on neutral and selective evolution.

Seed production and seedling emergence of Giant Parramatta grass on the north coast of New South Wales

1996 ◽  
Vol 36 (3) ◽  
pp. 299 ◽  
Author(s):  
TS Andrews ◽  
RDB Whalley ◽  
CE Jones
Keyword(s):  
Seed Production ◽  
Seed Bank ◽  
New South ◽  
New South Wales ◽  
Seed Banks ◽  
North Coast ◽  
The North ◽  
South Wales ◽  
Seed Fall ◽  
The Impact

Inputs and losses from Giant Parramatta grass [GPG, Sporobolus indicus (L.) R. Br. var. major (Buse) Baaijens] soil seed banks were quantified on the North Coast of New South Wales. Monthly potential seed production and actual seed fall was estimated at Valla during 1991-92. Total potential production was >668 000 seeds/m2 for the season, while seed fall was >146000 seeds/m2. Seed fall >10000 seeds/m2.month was recorded from January until May, with further seed falls recorded in June and July. The impact of seed production on seed banks was assessed by estimating seed banks in the seed production quadrats before and after seed fall. Seed banks in 4 of the 6 sites decreased in year 2, although seed numbers at 1 damp site increased markedly. Defoliation from mid-December until February, April or June prevented seed production, reducing seed banks by 34% over 7 months. Seed banks in undefoliated plots increased by 3300 seeds/m2, although seed fall was estimated at >114 000 seeds/m2. Emergence of GPG seedlings from artificially established and naturally occurring, persistent seed banks was recorded for 3 years from bare and vegetated treatment plots. Sown seeds showed high levels of innate dormancy and only 4% of seeds emerged when sown immediately after collection. Longer storage of seeds after collection resulted in more seedlings emerging. Estimates of persistent seed banks ranged from 1650 to about 21260 seeds/m2. Most seedlings emerged in spring or autumn and this was correlated with rainfall but not with ambient temperatures. Rates of seed bank decline in both bare and vegetated treatment plots was estimated by fitting exponential decay curves to seed bank estimates. Assuming no further seed inputs, it was estimated that it would take about 3 and 5 years, respectively, for seed banks to decline to 150 seeds/m2 in bare and vegetated treatments.

The role of seedbanks in invasions by Hyparrhenia hirta (L.) Stapf in Australia

2019 ◽  
Vol 41 (5) ◽  
pp. 383 ◽  
Author(s):  
Vinod K. Chejara ◽  
Paul Kristiansen ◽  
R. D. B. (Wal) Whalley ◽  
Brian M. Sindel ◽  
Christopher Nadolny
Keyword(s):  
South African ◽  
Seed Production ◽  
Seed Dormancy ◽  
Seed Bank ◽  
Soil Seed Bank ◽  
Perennial Grass ◽  
Seed Banks ◽  
Invasive Weed ◽  
South Wales ◽  
Poor Seed

Hyparrhenia hirta (L.) Stapf (also known as Coolatai grass, South African bluestem or thatching grass) has become a serious invasive weed in Australia. Within its native range, it is generally regarded as a useful grass particularly for thatching, and seed production is low with a low soil seed bank of from 2 to 200seedsm–2. Several hundred accessions of H. hirta were deliberately introduced into Australia up until the 1980s and nearly all were discarded because of poor seed production. However, at least one introduction in the 1890s in northern New South Wales (NSW), Australia, has possibly contributed to the present serious weed problem. Annual seed production from roadside stands in northern NSW ranged from 7000 to 92000seedsm–2 in 2015. The soil seed bank under dense H. hirta infestations in the same region in 2006 and 2007, was found to be ~30000seedsm–2 mostly confined to the top 2cm, with few dormant seeds and a large reduction of these numbers over the next 12 months when further seed input was prevented. Similar studies of other perennial grass weeds have found seed banks of similar sizes, but dormancy mechanisms ensure that their seed banks last for at least 10 years without further seed input. These results suggest that the present weedy populations of H. hirta have dramatically increased fecundity enabling a large seed bank to develop beneath dense stands. The development of seed dormancy and consequently a long-lived seed bank would make this weed even more difficult to control. Until seed dormancy develops, control of H. hirta in northern NSW can be effective provided further input into the seed bank can be prevented.

The impact of duration of drainage on the seed banks of northern prairie wetlands

1989 ◽  
Vol 67 (6) ◽  
pp. 1878-1884 ◽  
Author(s):  
Carol E. Wienhold ◽  
A. G. van der Valk
Keyword(s):  
Seed Bank ◽  
Seed Banks ◽  
Seed Density ◽  
Prairie Wetlands ◽  
Vegetation Surveys ◽  
The Mean ◽  
Wetland Species ◽  
Total Seed ◽  
The Impact

To determine the potential role of seed banks in the restoration of drained wetlands, the seed banks of 30 extant and 52 drained and cultivated prairie potholes were sampled in Iowa, Minnesota, and North Dakota; the potholes had been drained between 5 and 70 years ago. The midsummer vegetation of most of these potholes was also sampled. The number of species in the seed bank of a pothole declined from a mean of 12.3 in extant potholes to 7.5, 5.4, 5.0, 7.4, 3.2, and 2.1 in potholes drained up to 5, 10, 20, 30, 40, and 70 years ago, respectively. The mean total seed density of extant potholes was 3600 seeds/m2. It increased to 7000 seeds/m2 up to 5 years after drainage, but then declined rapidly to 1400, 1200, 600, 300, and 160 after up to 10, 20, 30, 40, and 70 years after drainage. Changes in both species richness and seed density with increasing duration of drainage varied from state to state. About 60% of the species present in the seed banks of extant or recently drained wetlands were not detected in wetlands that had been drained for more than 20 years. Vegetation surveys of extant and drained wetlands indicated that as many or more wetland species not detected in the seed bank were present in the vegetation, as there were wetland species in the seed bank.

The paradox of berry production in temperate species of Vaccinium

1994 ◽  
Vol 72 (1) ◽  
pp. 52-58 ◽  
Author(s):  
S. P. Vander Kloet ◽  
N. M. Hill
Keyword(s):  
Key Words ◽  
Seed Production ◽  
Seed Bank ◽  
Soil Column ◽  
Common Species ◽  
Seed Banks ◽  
Soil Cores ◽  
Vegetative Cover ◽  
Buried Seeds ◽  
Avalon Peninsula

Vegetative cover, fruiting phenology, and seed production was estimated from six Vaccinia heathlands on the Avalon Peninsula of Newfoundland so that the efficacy of the Vaccinium seed bank could be ascertained. Out of the six species of Vaccinium present in this vegetation, only V. angustifolium and V. boreale were recovered from 120 soil cores taken; V. uliginosum and V. vitis-idaea, two of the most common species on these heaths, were not represented in the seed bank at all, yet experimentally buried seeds from both these taxa will successfully germinate when exhumed after 6 years of burial. Indeed, 81% of the germinants were from taxa with dry fruits such as Kalmia, Luzula, Juncus, and Agrostis. Paucity of Vaccinium seed in the soil column may be due in part to fungal rot and avian predation. Key words: Vaccinium, seed production, seed banks, heaths.

Ecological Studies of the Endangered Rutidosis Leptorrhynchoides .I. Seed Production, Soil Seed Bank Dynamics, Population Density and Their Effects on Recruitment

1995 ◽  
Vol 43 (1) ◽  
pp. 1 ◽  
Author(s):  
JW Morgan
Keyword(s):  
Population Density ◽  
Seed Production ◽  
Seed Bank ◽  
Seedling Recruitment ◽  
Fire Regime ◽  
Seedling Survival ◽  
Soil Seed Bank ◽  
Seedling Emergence ◽  
Seed Bank Dynamics ◽  
The Impact

The seasonal dynamics of the soil seed bank of Rutidosis leptorrhynchoides F.Muell. were studied by the seedling emergence technique. Seed longevity in soil was quantified in a seed burial and retrieval experiment. The importance of annual seed production to recruitment was also determined over a 2-year-period, as was the impact of conspecific neighbour density on seed production per inflorescence. Rutidosis leptorrhynchoides appears to form a transient seed bank with little capacity to store germinable seeds in the soil from year to year. No seedlings were observed in soil sampled after the autumn germination pulse and no viable seed was present in the soil within 16 weeks of burial. The rate of seed loss was similar when seed was buried under all intact grassland canopy and in 0.25m2 canopy gaps. It appears that most seeds simply rot in moist soil or are predated by soil invertebrates. Seedling recruitment was at least 15 times greater in plots where natural seed input occurred than where it was curtailed. Less than 10% of seed shed resulted in seedling emergence. It is suggested that recruitment in the large populations studied was limited by germination rather than by microsite availability for seedling survival. Population density had an impact on seed production with sparsely distributed individuals producing fewer seeds per inflorescence than plants from denser colonies, although there was much variation. Sparse plants produced significantly fewer seeds per inflorescence than hand crosspollinated heads suggesting reduced pollinator efficacy in these colonies relative to larger colonies where there was no such difference. Rutidosis leptorrhynchoides is dependent on the maintenance of the standing population for recruitment. Any factors that influence flowering and subsequent seed production will limit the ability of the species to regenerate. Over sufficient time, this could lead to the localised extinction of the species and may explain why R. leptorrhynchoides has failed to reappear in remnants where a suitable fire regime has been re-implemented after a period of management unfavourable to the survival, flowering and regeneration of this species.

Effect of a Living Mulch on Weed Seed Banks in Tomato

2011 ◽  
Vol 25 (2) ◽  
pp. 245-251 ◽  
Author(s):  
Kevin D. Gibson ◽  
John Mcmillan ◽  
Stephen G. Hallett ◽  
Thomas Jordan ◽  
Stephen C. Weller
Keyword(s):  
Seed Production ◽  
Seed Bank ◽  
Critical Period ◽  
Field Studies ◽  
Seed Banks ◽  
Weed Suppression ◽  
Weed Seed ◽  
Fresh Market ◽  
Living Mulch ◽  
Seed Rate

Weeds that emerge between rows in fresh market tomatoes after the critical period of competition are not suppressed by the crop and can produce large quantities of seed. A living mulch planted between rows might limit weed seed production. Buckwheat was seeded between tomato rows after the critical period in 2007 and 2008 in field studies near Lafayette, IN. Weeds were allowed to emerge after the critical period (CP), controlled throughout the growing season (no seed threshold [NST]), or mowed to limit seed production (MOW). Buckwheat and MOW plots were mowed twice after the critical period in 2007 and once in 2008. Seed banks were sampled after the critical period and in the following spring. Tomato yields were not reduced by growing buckwheat between rows. Seed bank densities for common purslane and carpetweed, which escaped mowing due to their prostrate habits, increased in all treatments. Germinable seed bank densities were 306 seeds m−2or less in the NST and buckwheat treatments but 755 seeds m−2or more in the CP treatments for species with erect habits in both years. Seed bank densities were lower in the MOW treatment than in the CP treatments in 2007 but not in 2008. In a parallel experiment conducted in adjacent plots, buckwheat was seeded at five rates (0, 56, 112, 168, and 224 kg seed ha−1). Plots were mowed and emergent weeds sampled as described for the intercrop experiment. Weed densities before mowing decreased linearly with buckwheat seed rate. After mowing, no relationship was detected between seed rate and weed densities. This study supports the hypothesis that a living mulch planted after the critical period can be used to limit seed bank growth without reducing tomato yields, but additional research is needed to better understand the effect of mowing on living mulch growth and weed suppression.

Seed banks: Memory in soil

1995 ◽  
Vol 75 (1) ◽  
pp. 11-13 ◽  
Author(s):  
Paul B. Cavers
Keyword(s):  
Genetic Structure ◽  
Seed Bank ◽  
Seed Banks ◽  
Reduced Tillage ◽  
Herbicide Resistant ◽  
Areas Of Interest ◽  
The Impact

Approaches used to study seed banks and early publications on them are summarized. Current areas of interest are described, including the balance between herbicide-susceptible and herbicide-resistant seed populations, the effects of reduced tillage, the genetic structure of the seed bank, the role of desiccation, the impact of nutrients, oxygen and ortho-dihydroxyphenols, and methods of sampling seed banks and processing the data.

Teaching Seed Bank Ecology in an Undergraduate Laboratory Exercise

1995 ◽  
Vol 9 (1) ◽  
pp. 5-16 ◽  
Author(s):  
Emilie E. Regnier
Keyword(s):  
Seed Production ◽  
Seed Bank ◽  
Soil Seed Bank ◽  
Species Abundance ◽  
Conventional Tillage ◽  
Seed Banks ◽  
Soil Disturbance ◽  
Life Cycles ◽  
Weed Seed ◽  
Laboratory Exercise

The study of weed life cycles, reproductive strategies, and the soil seed bank is emphasized in the undergraduate weed science course at Ohio State University as central to an understanding of the survival of weeds in the environment. A laboratory exercise was conducted every spring and fall academic quarter from 1991 to 1993 to demonstrate the effects of long-term cropping and soil disturbance histories on weed seed banks and aboveground weed communities. Five sites with diverse histories of culture were sampled; these included a field cultivated in vegetables under continuous conventional tillage for 59 yr, a field cultivated in field corn under continuous no-tillage for 11 yr, a 24 yr-old turfgrass research farm, a 70 yr-old forest, and a section of the forest border. Students conducted a survey of the weeds growing at the sites and separated and identified seeds from soil samples over a 3-wk period in weekly 2-h laboratory periods. Students wrote reports interpreting the data based on their knowledge of the site histories, weed life cycles, and weed seed production and longevity characteristics. The data were consistent over academic quarters as well as with published research, indicating that the survey and soil sampling techniques provided a reasonably accurate representation of the weed flora and soil seed populations. Weeds found growing at the sites were primarily summer annuals at the vegetable site, and a mix of summer and winter annuals, biennials, and perennials at the remaining sites. Annual weeds dominated the seed banks of all sites with common lambsquarters, pigweed spp., and common purslane being the most commonly found seeds. The presence of most seeds in the soil could be explained by a combination of species seed production and seed longevity characteristics and species abundance in the standing community. Interpretation of the data required students to integrate and apply lecture material and provided an excellent thinking exercise.

The impact of climate temperature on counts, recovery, and death rates due to SARS-CoV-2 in South Africa. (Preprint)

2020 ◽  
Author(s):  
Neven Chetty ◽  
Bamise Adeleye ◽  
Abiola Olawale Ilori
Keyword(s):  
South Africa ◽  
South African ◽  
Death Rate ◽  
Western Cape ◽  
Warm Climate ◽  
The South ◽  
Recovery Rates ◽  
Death Rates ◽  
Online Resource ◽  
The Impact

BACKGROUND The impact of climate temperature on the counts (number of positive COVID-19 cases reported), recovery, and death rates of COVID-19 cases in South Africa's nine provinces was investigated. The data for confirmed cases of COVID-19 were collected for March 25 and June 30, 2020 (14 weeks) from South Africa's Government COVID-19 online resource, while the daily provincial climate temperatures were collected from the website of the South African Weather Service. Our result indicates that a higher or lower climate temperature does not prevent or delay the spread and death rates but shows significant positive impacts on the recovery rates of COVID-19 patients. Thus, it indicates that the climate temperature is unlikely to impose a strict limit on the spread of COVID-19. There is no correlation between the cases and death rates, an indicator that no particular temperature range is closely associated with a faster or slower death rate of COVID-19 patients. As evidence from our study, a warm climate temperature can only increase the recovery rate of COVID-19 patients, ultimately impacting the death and active case rates and freeing up resources quicker to enable health facilities to deal with those patients' climbing rates who need treatment. OBJECTIVE This study aims to investigate the impact of climate temperature variation on the counts, recovery, and death rates of COVID-19 cases in all South Africa's provinces. The findings were compared with those of countries with comparable climate temperature values. METHODS The data for confirmed cases of COVID-19 were collected for March 25 and June 30 (14 weeks) for South African provinces, including daily counts, death, and recovery rates. The dates were grouped into two, wherein weeks 1-5 represent the periods of total lockdown to contain the spread of COVID-19 in South Africa. Weeks 6-14 are periods where the lockdown was eased to various levels 4 and 3. The daily information of COVID-19 count, death, and recovery was obtained from South Africa's Government COVID-19 online resource (https://sacoronavirus.co.za). Daily provincial climate temperatures were collected from the website of the South African Weather Service (https://www.weathersa.co.za). The provinces of South Africa are Eastern Cape, Western Cape, Northern Cape, Limpopo, Northwest, Mpumalanga, Free State, KwaZulu-Natal, Western Cape, and Gauteng. Weekly consideration was given to the daily climate temperature (average minimum and maximum). The recorded values were considered, respectively, to be in the ratio of death-to-count (D/C) and recovery-to-count (R/C). Descriptive statistics were performed for all the data collected for this study. The analyses were performed using the Person’s bivariate correlation to analyze the association between climate temperature, death-to-count, and recovery-to-count ratios of COVID-19. RESULTS The results showed that higher climate temperatures aren't essential to avoid the COVID-19 from being spread. The present results conform to the reports that suggested that COVID-19 is unlike the seasonal flu, which does dissipate as the climate temperature rises [17]. Accordingly, the ratio of counts and death-to-count cannot be concluded to be influenced by variations in the climate temperatures within the study areas. CONCLUSIONS The study investigates the impact of climate temperature on the counts, recovery, and death rates of COVID-19 cases in all South Africa's provinces. The findings were compared with those of countries with comparable climate temperatures as South Africa. Our result indicates that a higher or lower climate temperature does not prevent or delay the spread and death rates but shows significant positive impacts on the recovery rates of COVID-19 patients. Warm climate temperatures seem not to restrict the spread of the COVID-19 as the count rate was substantial at every climate temperatures. Thus, it indicates that the climate temperature is unlikely to impose a strict limit on the spread of COVID-19. There is no correlation between the cases and death rates, an indicator that there is no particular temperature range of the climatic conditions closely associated with a faster or slower death rate of COVID-19 patients. However, other shortcomings in this study's process should not be ignored. Some other factors may have contributed to recovery rates, such as the South African government's timely intervention to announce a national lockout at the early stage of the outbreak, the availability of intensive medical care, and social distancing effects. Nevertheless, this study shows that a warm climate temperature can only help COVID-19 patients recover more quickly, thereby having huge impacts on the death and active case rates.

Effect of different treatments on the seed bank of grazed and ungrazed Baltic seashore meadows

1998 ◽  
Vol 76 (7) ◽  
pp. 1188-1197 ◽  
Author(s):  
Heli M. Jutila b. Erkkilä
Keyword(s):  
Seed Bank ◽  
Brackish Water ◽  
Salt Water ◽  
Tap Water ◽  
Cold Treatment ◽  
Abundant Species ◽  
Seed Banks ◽  
The West ◽  
Pesticide Treatment ◽  
Juncus Gerardii

Seed banks of two seashore meadows were studied on the west coast of Finland (latitude 61°30'-61°33'N, longitude 21°28'-21°41'E). Samples were taken in June to a depth of 10 cm in the geolittoral zone of the grazed and ungrazed transects. The grazed samples were halved lengthwise: one half was grown immediately, the other after cold treatment. One third of the all samples was treated as controls, one third was watered with brackish water, and one third was given a pesticide treatment. Altogether, 13 926 seedlings germinated and 25 species were identified (three annuals, two biennials, and the rest perennials). Most seedlings were perennial monocots, with Juncus gerardii Loisel. the most abundant species. The seed bank was significantly larger and richer in the ungrazed site than in the grazed site. Cold treatment reduced the number of germinating species and seedlings. In the grazed and non-cold-treated samples, the numbers of species and seedlings were highest in the pesticide treatment. In ungrazed samples there were no significant differences among treatments. After the cold treatment, the least number of species and seedlings was produced by the salt-water treatment. Changing brackish water to tap water led to a burst of germination, especially of J. gerardii. The seed bank of the upper geolittoral zone was richer than that of the middle geolittoral. The multivariate classification and ordination groupings are based on the abundances of J. gerardii and Glaux maritima L.; different treatments were not distinguishable. There was a low resemblance between the seed bank and the aboveground vegetation.Key words: seed bank, salinity, pesticide, seashore meadow, cold treatment, vegetation.

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