scholarly journals Individual heterogeneity and capture-recapture models: what, why and how?

2017 ◽  
Author(s):  
Olivier Gimenez ◽  
Emmanuelle Cam ◽  
Jean-Michel Gaillard
Keyword(s):  
Population Dynamics ◽  
Life History ◽  
Finite Mixture Models ◽  
Random Effect ◽  
Life History Evolution ◽  
Individual Heterogeneity ◽  
Future Research ◽  
Imperfect Detection ◽  
Trade Offs ◽  
Capture Recapture

AbstractVariation between and within individuals in life history traits is ubiquitous in natural populations. When affecting fitness-related traits such as survival or reproduction, individual heterogeneity plays a key role in population dynamics and life history evolution. However, it is only recently that properly accounting for individual heterogeneity when studying population dynamics of free-ranging populations has been made possible through the development of appropriate statistical models. We aim here to review case studies of individual heterogeneity in the context of capture-recapture models for the estimation of population size and demographic parameters with imperfect detection. First, we define what individual heterogeneity means and clarify the terminology used in the literature. Second, we review the literature and illustrate why individual heterogeneity is used in capture-recapture studies by focusing on the detection of life-history trade-offs, including senescence. Third, we explain how to model individual heterogeneity in capture-recapture models and provide the code to fit these models (https://github.com/oliviergimenez/indhet_in_CRmodels). The distinction is made between situations in which heterogeneity is actually measured and situations in which part of the heterogeneity remains unobserved. Regarding the latter, we outline recent developments of random-effect models and finite-mixture models. Finally, we discuss several avenues for future research.

scholarly journals The physiological costs of reproduction in small mammals

2007 ◽  
Vol 363 (1490) ◽  
pp. 375-398 ◽  
Author(s):  
John R Speakman
Keyword(s):  
Life History ◽  
Small Mammals ◽  
Morphological Changes ◽  
Life History Evolution ◽  
Indirect Costs ◽  
Direct Costs ◽  
Costs Of Reproduction ◽  
Dominant Component ◽  
Trade Offs ◽  
Almost All

Life-history trade-offs between components of fitness arise because reproduction entails both gains and costs. Costs of reproduction can be divided into ecological and physiological costs. The latter have been rarely studied yet are probably a dominant component of the effect. A deeper understanding of life-history evolution will only come about once these physiological costs are better understood. Physiological costs may be direct or indirect. Direct costs include the energy and nutrient demands of the reproductive event, and the morphological changes that are necessary to facilitate achieving these demands. Indirect costs may be optional ‘compensatory costs’ whereby the animal chooses to reduce investment in some other aspect of its physiology to maximize the input of resource to reproduction. Such costs may be distinguished from consequential costs that are an inescapable consequence of the reproductive event. In small mammals, the direct costs of reproduction involve increased energy, protein and calcium demands during pregnancy, but most particularly during lactation. Organ remodelling is necessary to achieve the high demands of lactation and involves growth of the alimentary tract and associated organs such as the liver and pancreas. Compensatory indirect costs include reductions in thermogenesis, immune function and physical activity. Obligatory consequential costs include hyperthermia, bone loss, disruption of sleep patterns and oxidative stress. This is unlikely to be a complete list. Our knowledge of these physiological costs is currently at best described as rudimentary. For some, we do not even know whether they are compensatory or obligatory. For almost all of them, we have no idea of exact mechanisms or how these costs translate into fitness trade-offs.

scholarly journals Life‐history evolution in the anthropocene: effects of increasing nutrients on traits and trade‐offs

2015 ◽  
Vol 8 (7) ◽  
pp. 635-649 ◽  
Author(s):  
Emilie Snell‐Rood ◽  
Rickey Cothran ◽  
Anne Espeset ◽  
Punidan Jeyasingh ◽  
Sarah Hobbie ◽  
...  
Keyword(s):  
Life History ◽  
Life History Evolution ◽  
Trade Offs ◽  
History Evolution

scholarly journals Arabis alpina: a perennial model plant for ecological genomics and life-history evolution

2021 ◽  
Author(s):  
Stefan Wötzel ◽  
Marco Andrello ◽  
Maria Albani ◽  
Marcus Koch ◽  
George Coupland ◽  
...  
Keyword(s):  
Life History ◽  
Life History Evolution ◽  
The Arctic ◽  
Model Organisms ◽  
Future Research ◽  
Ecological Genomics ◽  
Open Questions ◽  
Arabis Alpina ◽  
History Evolution ◽  
Plant Families

Many model organisms have obtained a prominent status due to an advantageous combination of their life-history characteristics, genetic properties and also practical considerations. In non-crop plants, Arabidopsis thaliana is the most renowned model and has been used as study system to elucidate numerous biological processes at the molecular level. Once a complete genome sequence was available, research has markedly accelerated and further established A. thaliana as the reference to stimulate studies in other species with different biology. Within the Brassicaceae family, the arctic-alpine perennial Arabis alpina has become a model complementary to A. thaliana to study life-history evolution and ecological genomics in harsh environments. In this review, we provide an overview of the properties that facilitated the rapid emergence of A. alpina as a plant model. We summarize the evolutionary history of A. alpina, including the diversification of its mating system, and discuss recent progress in the molecular dissection of developmental traits that are related to its perennial life history and environmental adaptation. We indicate open questions from which future research might be developed in other Brassicaceae species or more distantly related plant families.

scholarly journals Ecología de las poblaciones de plantas en una selva húmeda de México

2017 ◽  
pp. 121
Author(s):  
Miguel Martínez-Ramos ◽  
Elena Álvarez-Buylla
Keyword(s):  
Population Dynamics ◽  
Life History Evolution ◽  
Life Forms ◽  
Future Research ◽  
Tropical Rain Forests ◽  
Field Station ◽  
Plant Life Forms ◽  
Demographic Patterns ◽  
Plant Population Ecology ◽  
Conservation And Management

This paper reviewing plant population ecology studies that have done in Mexican tropical rain forests, particularly at the Los Tuxtlas Tropical Field Station (UNAM). The review considers next topics: (i) population structure and demographic patterns, (ii) population dynamics, (iii) life-history evolution, and (iv) the importance of demography and genetics for conservation and management of tropical rain forest plant products. The studies show an important advance in the description of patterns, in the analysis of population dynamics, and in the detection of some key demographic elements that can be important for forest conservation and management. However, the understanding of causes that originate such patterns and dynamics is yet poor. The studies have focused mainly on abundant arboreal plant species; other plant life-forms and rare species have received virtually null attention. After pointing out conclusions gained from our review, we propose some perspectives for future research.

scholarly journals Life history evolution under climate change and its influence on the population dynamics of a long-lived plant

2015 ◽  
Vol 103 (4) ◽  
pp. 798-808 ◽  
Author(s):  
Jennifer L. Williams ◽  
Hans Jacquemyn ◽  
Brad M. Ochocki ◽  
Rein Brys ◽  
Tom E. X. Miller
Keyword(s):  
Climate Change ◽  
Population Dynamics ◽  
Life History ◽  
Life History Evolution ◽  
History Evolution

Trade-Offs in Life-History Evolution

1989 ◽  
Vol 3 (3) ◽  
pp. 259 ◽  
Author(s):  
S. C. Stearns
Keyword(s):  
Life History ◽  
Life History Evolution ◽  
Trade Offs ◽  
History Evolution

Intraspecific variation in reproductive effort by female Parapediasia teterrella (Lepidoptera: Pyralidae) and its relation to body size

1990 ◽  
Vol 68 (1) ◽  
pp. 44-48 ◽  
Author(s):  
Larry D. Marshall
Keyword(s):  
Life History ◽  
Body Size ◽  
Egg Production ◽  
Egg Size ◽  
Reproductive Effort ◽  
Life History Evolution ◽  
Reproductive Parameters ◽  
Trade Offs ◽  
Egg Number ◽  
Lepidoptera Pyralidae

Daily egg production of the moth Parapediasia teterrella declined over the life-span of the female but egg size remained constant. The absence of water resulted in lower fecundity and early mortality. Egg size and lifetime fecundity showed considerable inter-individual variation and large females produced more and larger eggs than their smaller counterparts. Large females expended greater reproductive effort than small females. Hatching success was negatively related to egg size. In spite of this, large females laying large eggs had higher fitness than small females. I postulate that multiple reproductive strategies within a species, resulting from differences in reproductive effort expended, may explain why expected trade-offs in reproductive parameters (e.g., egg size versus egg number) were not found in this species. Furthermore, I argue that the prevalent interpretation of life-history evolution (that body size is the important determining parameter of life-history parameters) may reflect correlation of body size with reproductive effort, and reproductive effort may be more important in determining the nature of trade-offs between reproductive parameters.

scholarly journals Physiological demands and nutrient intake modulate a trade-off between dispersal and reproduction based on age and sex of field crickets

2021 ◽  
Vol 224 (7) ◽  
Author(s):  
Lisa A. Treidel ◽  
Rebecca M. Clark ◽  
Melissa T. Lopez ◽  
Caroline M. Williams
Keyword(s):  
Life History ◽  
Flight Muscle ◽  
Life History Strategy ◽  
Life History Evolution ◽  
Resource Acquisition ◽  
Muscle Quality ◽  
Field Crickets ◽  
Trade Offs ◽  
Physiological Demands ◽  
Age And Sex

ABSTRACT Animals adjust resource acquisition throughout life to meet changing physiological demands of growth, reproduction, activity and somatic maintenance. Wing-polymorphic crickets invest in either dispersal or reproduction during early adulthood, providing a system in which to determine how variation in physiological demands, determined by sex and life history strategy, impact nutritional targets, plus the consequences of nutritionally imbalanced diets across life stages. We hypothesized that high demands of biosynthesis (especially oogenesis in females) drive elevated resource acquisition requirements and confer vulnerability to imbalanced diets. Nutrient targets and allocation into key tissues associated with life history investments were determined for juvenile and adult male and female field crickets (Gryllus lineaticeps) when given a choice between two calorically equivalent but nutritionally imbalanced (protein- or carbohydrate-biased) artificial diets, or when restricted to one imbalanced diet. Flight muscle synthesis drove elevated general caloric requirements for juveniles investing in dispersal, but flight muscle quality was robust to imbalanced diets. Testes synthesis was not costly, and life history investments by males were insensitive to diet composition. In contrast, costs of ovarian synthesis drove elevated caloric and protein requirements for adult females. When constrained to a carbohydrate-biased diet, ovary synthesis was reduced in reproductive morph females, eliminating their advantage in early life fecundity over the dispersal morph. Our findings demonstrate that nutrient acquisition modulates dispersal–reproduction trade-offs in an age- and sex-specific manner. Declines in food quality will thus disproportionately affect specific cohorts, potentially driving demographic shifts and altering patterns of life history evolution.

scholarly journals Integrative developmental ecology: a review of density-dependent effects on life-history traits and host-microbe interactions in non-social holometabolous insects

2020 ◽  
Vol 34 (5) ◽  
pp. 659-680 ◽  
Author(s):  
Anh The Than ◽  
Fleur Ponton ◽  
Juliano Morimoto
Keyword(s):  
Population Dynamics ◽  
Life History ◽  
Life History Traits ◽  
Larval Density ◽  
Future Research ◽  
Density Dependent ◽  
Integrative Framework ◽  
Wide Range ◽  
Microbe Interactions ◽  
Host Microbe Interactions

Abstract Population density modulates a wide range of eco-evolutionary processes including inter- and intra-specific competition, fitness and population dynamics. In holometabolous insects, the larval stage is particularly susceptible to density-dependent effects because the larva is the resource-acquiring stage. Larval density-dependent effects can modulate the expression of life-history traits not only in the larval and adult stages but also downstream for population dynamics and evolution. Better understanding the scope and generality of density-dependent effects on life-history traits of current and future generations can provide useful knowledge for both theory and experiments in developmental ecology. Here, we review the literature on larval density-dependent effects on fitness of non-social holometabolous insects. First, we provide a functional definition of density to navigate the terminology in the literature. We then classify the biological levels upon which larval density-dependent effects can be observed followed by a review of the literature produced over the past decades across major non-social holometabolous groups. Next, we argue that host-microbe interactions are yet an overlooked biological level susceptible to density-dependent effects and propose a conceptual model to explain how density-dependent effects on host-microbe interactions can modulate density-dependent fitness curves. In summary, this review provides an integrative framework of density-dependent effects across biological levels which can be used to guide future research in the field of ecology and evolution.

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