scholarly journals Effect size and statistical power in the rodent fear conditioning literature – a systematic review

2017 ◽  
Author(s):  
Clarissa F. D. Carneiro ◽  
Thiago C. Moulin ◽  
Malcolm R. Macleod ◽  
Olavo B. Amaral
Keyword(s):  
Systematic Review ◽  
Sample Size ◽  
Fear Conditioning ◽  
Effect Size ◽  
Statistical Power ◽  
Sample Size Calculation ◽  
Wide Distribution ◽  
Effect Sizes ◽  
Biomedical Science ◽  
Case Scenario

AbstractProposals to increase research reproducibility frequently call for focusing on effect sizes instead of p values, as well as for increasing the statistical power of experiments. However, it is unclear to what extent these two concepts are indeed taken into account in basic biomedical science. To study this in a real-case scenario, we performed a systematic review of effect sizes and statistical power in studies on learning of rodent fear conditioning, a widely used behavioral task to evaluate memory. Our search criteria yielded 410 experiments comparing control and treated groups in 122 articles. Interventions had a mean effect size of 29.5%, and amnesia caused by memory-impairing interventions was nearly always partial. Mean statistical power to detect the average effect size observed in well-powered experiments with significant differences (37.2%) was 65%, and was lower among studies with non-significant results. Only one article reported a sample size calculation, and our estimated sample size to achieve 80% power considering typical effect sizes and variances (15 animals per group) was reached in only 12.2% of experiments. Actual effect sizes correlated with effect size inferences made by readers on the basis of textual descriptions of results only when findings were non-significant, and neither effect size nor power correlated with study quality indicators, number of citations or impact factor of the publishing journal. In summary, effect sizes and statistical power have a wide distribution in the rodent fear conditioning literature, but do not seem to have a large influence on how results are described or cited. Failure to take these concepts into consideration might limit attempts to improve reproducibility in this field of science.

scholarly journals Statistical Power in Content Analysis Designs: How Effect Size, Sample Size and Coding Accuracy Jointly Affect Hypothesis Testing ‐ A Monte Carlo Simulation Approach.

2021 ◽  
Vol 3 (1) ◽  
pp. 61-89
Author(s):  
Stefan Geiß
Keyword(s):  
Monte Carlo Simulation ◽  
Monte Carlo ◽  
Content Analysis ◽  
Sample Size ◽  
Effect Size ◽  
Statistical Power ◽  
Effect Sizes ◽  
Sample Sizes ◽  
Expected Effect ◽  
Sample Size Effect

Abstract This study uses Monte Carlo simulation techniques to estimate the minimum required levels of intercoder reliability in content analysis data for testing correlational hypotheses, depending on sample size, effect size and coder behavior under uncertainty. The ensuing procedure is analogous to power calculations for experimental designs. In most widespread sample size/effect size settings, the rule-of-thumb that chance-adjusted agreement should be ≥.80 or ≥.667 corresponds to the simulation results, resulting in acceptable α and β error rates. However, this simulation allows making precise power calculations that can consider the specifics of each study’s context, moving beyond one-size-fits-all recommendations. Studies with low sample sizes and/or low expected effect sizes may need coder agreement above .800 to test a hypothesis with sufficient statistical power. In studies with high sample sizes and/or high expected effect sizes, coder agreement below .667 may suffice. Such calculations can help in both evaluating and in designing studies. Particularly in pre-registered research, higher sample sizes may be used to compensate for low expected effect sizes and/or borderline coding reliability (e.g. when constructs are hard to measure). I supply equations, easy-to-use tables and R functions to facilitate use of this framework, along with example code as online appendix.

USING R FOR PSYCHOLOGICAL RESEARCH: A TUTORIAL OF BASIC METHODS

2020 ◽  
pp. 28-63
Author(s):  
A. G. Vinogradov
Keyword(s):  
Sample Size ◽  
Empirical Research ◽  
Effect Size ◽  
Statistical Power ◽  
Sample Size Calculation ◽  
Psychological Research ◽  
Research Data ◽  
Statistical Hypothesis ◽  
Categorical Variables ◽  
Measurement Scales

The article belongs to a special modern genre of scholar publications, so-called tutorials – articles devoted to the application of the latest methods of design, modeling or analysis in an accessible format in order to disseminate best practices. The article acquaints Ukrainian psychologists with the basics of using the R programming language to the analysis of empirical research data. The article discusses the current state of world psychology in connection with the Crisis of Confidence, which arose due to the low reproducibility of empirical research. This problem is caused by poor quality of psychological measurement tools, insufficient attention to adequate sample planning, typical statistical hypothesis testing practices, and so-called “questionable research practices.” The tutorial demonstrates methods for determining the sample size depending on the expected magnitude of the effect size and desired statistical power, performing basic variable transformations and statistical analysis of psychological research data using language and environment R. The tutorial presents minimal system of R functions required to carry out: modern analysis of reliability of measurement scales, sample size calculation, point and interval estimation of effect size for four the most widespread in psychology designs for the analysis of two variables’ interdependence. These typical problems include finding the differences between the means and variances in two or more samples, correlations between continuous and categorical variables. Practical information on data preparation, import, basic transformations, and application of basic statistical methods in the cloud version of RStudio is provided.

scholarly journals Causality in Statistical Power: Isomorphic Properties of Measurement, Research Design, Effect Size, and Sample Size

Scientifica ◽  
2016 ◽  
Vol 2016 ◽  
pp. 1-5 ◽  
Author(s):  
R. Eric Heidel
Keyword(s):  
Sample Size ◽  
Cognitive Dissonance ◽  
Research Design ◽  
Effect Size ◽  
Statistical Power ◽  
Research Study ◽  
A Priori ◽  
Sample Size Calculation ◽  
Design Effect

Statistical power is the ability to detect a significant effect, given that the effect actually exists in a population. Like most statistical concepts, statistical power tends to induce cognitive dissonance in hepatology researchers. However, planning for statistical power by ana priorisample size calculation is of paramount importance when designing a research study. There are five specific empirical components that make up ana priorisample size calculation: the scale of measurement of the outcome, the research design, the magnitude of the effect size, the variance of the effect size, and the sample size. A framework grounded in the phenomenon of isomorphism, or interdependencies amongst different constructs with similar forms, will be presented to understand the isomorphic effects of decisions made on each of the five aforementioned components of statistical power.

scholarly journals Effect size and statistical power in the rodent fear conditioning literature – A systematic review

PLoS ONE ◽  
2018 ◽  
Vol 13 (4) ◽  
pp. e0196258 ◽  
Author(s):  
Clarissa F. D. Carneiro ◽  
Thiago C. Moulin ◽  
Malcolm R. Macleod ◽  
Olavo B. Amaral
Keyword(s):  
Systematic Review ◽  
Fear Conditioning ◽  
Effect Size ◽  
Statistical Power

Sample-Size Planning for More Accurate Statistical Power: A Method Adjusting Sample Effect Sizes for Publication Bias and Uncertainty

2017 ◽  
Vol 28 (11) ◽  
pp. 1547-1562 ◽  
Author(s):  
Samantha F. Anderson ◽  
Ken Kelley ◽  
Scott E. Maxwell
Keyword(s):  
Sample Size ◽  
Publication Bias ◽  
Effect Size ◽  
Statistical Power ◽  
Web Applications ◽  
R Package ◽  
Effect Sizes ◽  
Alternative Approach ◽  
Sample Size Planning ◽  
User Friendly

The sample size necessary to obtain a desired level of statistical power depends in part on the population value of the effect size, which is, by definition, unknown. A common approach to sample-size planning uses the sample effect size from a prior study as an estimate of the population value of the effect to be detected in the future study. Although this strategy is intuitively appealing, effect-size estimates, taken at face value, are typically not accurate estimates of the population effect size because of publication bias and uncertainty. We show that the use of this approach often results in underpowered studies, sometimes to an alarming degree. We present an alternative approach that adjusts sample effect sizes for bias and uncertainty, and we demonstrate its effectiveness for several experimental designs. Furthermore, we discuss an open-source R package, BUCSS, and user-friendly Web applications that we have made available to researchers so that they can easily implement our suggested methods.

Statistical Power of Negative Randomized Controlled Trials Presented at American Society for Clinical Oncology Annual Meetings

2007 ◽  
Vol 25 (23) ◽  
pp. 3482-3487 ◽  
Author(s):  
Philippe L. Bedard ◽  
Monika K. Krzyzanowska ◽  
Melania Pintilie ◽  
Ian F. Tannock
Keyword(s):  
Sample Size ◽  
Effect Size ◽  
Statistical Power ◽  
Effect Sizes ◽  
Controlled Trials ◽  
Time To Event ◽  
Randomized Controlled ◽  
American Society ◽  
Post Hoc ◽  
Adequate Sample Size

Purpose To investigate the prevalence of underpowered randomized controlled trials (RCTs) presented at American Society of Clinical Oncology (ASCO) annual meetings. Methods We surveyed all two-arm phase III RCTs presented at ASCO annual meetings from 1995 to 2003 for which negative results were obtained. Post hoc calculations were performed using a power of 80% and an α level of .05 (two sided) to determine sample sizes required to detect small, medium, and large effect sizes. For studies reporting a proportion or time-to-event as primary end point, effect size was expressed as an odds ratio (OR) or hazard ratio (HR), respectively, with a small effect size defined as OR/HR ≥ 1.3, medium effect size defined as OR/HR ≥ 1.5, and large effect size defined as OR/HR ≥ 2.0. Logistic regression was used to identify factors associated with lack of statistical power. Results Of 423 negative RCTs for which post hoc sample size calculations could be performed, 45 (10.6%), 138 (32.6%), and 233 (55.1%) had adequate sample size to detect small, medium, and large effect sizes, respectively. Only 35 negative RCTs (7.1%) reported a reason for inadequate sample size. In a multivariable model, studies that were presented at oral sessions (P = .0038), multicenter studies supported by a cooperative group (P < .0001), and studies with time to event as primary outcome (P < .0001) were more likely to have adequate sample size. Conclusion More than half of negative RCTs presented at ASCO annual meetings do not have an adequate sample to detect a medium-size treatment effect.

scholarly journals Effect Size Interpretation, Sample Size Calculation, and Statistical Power in Gerontology

2019 ◽  
Author(s):  
Christopher Brydges
Keyword(s):  
Individual Differences ◽  
Sample Size ◽  
Effect Size ◽  
Sample Size Calculation ◽  
Effect Sizes ◽  
Group Differences ◽  
Cohen’S D ◽  
Pearson's R ◽  
Cohen's D ◽  
Pearson’S R

Background and Objectives: Researchers typically use Cohen’s guidelines of Pearson’s r = .10, .30, and .50, and Cohen’s d = 0.20, 0.50, and 0.80 to interpret observed effect sizes as small, medium, or large, respectively. However, these guidelines were not based on quantitative estimates, and are only recommended if field-specific estimates are unknown. The current study investigated the distribution of effect sizes in both individual differences research and group differences research in gerontology to provide estimates of effect sizes in the field.Research Design and Methods: Effect sizes (Pearson’s r, Cohen’s d, and Hedges’ g) were extracted from meta-analyses published in ten top-ranked gerontology journals. The 25th, 50th, and 75th percentile ranks were calculated for Pearson’s r (individual differences) and Cohen’s d or Hedges’ g (group differences) values as indicators of small, medium, and large effects. A priori power analyses were conducted for sample size calculations given the observed effect size estimates.Results: Effect sizes of Pearson’s r = .12, .20, and .32 for individual differences research and Hedges’ g = 0.16, 0.38, and 0.76 for group differences research were interpreted as small, medium, and large effects in gerontology. Discussion and Implications: Cohen’s guidelines appear to overestimate effect sizes in gerontology. Researchers are encouraged to use Pearson’s r = .10, .20, and .30, and Cohen’s d or Hedges’ g = 0.15, 0.40, and 0.75 to interpret small, medium, and large effects in gerontology, and recruit larger samples.

scholarly journals Protocol for a systematic review of effect sizes and statistical power in the rodent fear conditioning literature

2016 ◽  
Vol 3 (1) ◽  
pp. e00016 ◽  
Author(s):  
T.C. Moulin ◽  
C.F.D. Carneiro ◽  
M.R. Macleod ◽  
O.B. Amaral
Keyword(s):  
Systematic Review ◽  
Fear Conditioning ◽  
Statistical Power ◽  
Effect Sizes
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