scholarly journals Convection - Diffusion model of talking bacteria

2017 ◽  
Author(s):  
Sarangam Majumdar ◽  
Subhoshmita Mondal
Keyword(s):  
Mathematical Model ◽  
Diffusion Coefficient ◽  
Quorum Sensing ◽  
Biological System ◽  
Numerical Scheme ◽  
Cell Communication ◽  
Threshold Concentration ◽  
Communication Process ◽  
Convection Diffusion ◽  
Sensing Systems

abstractQuorum sensing is cell to cell communication process through chemical signals formally known as autoinducers. When the concentration of quorum sensing molecules reached threshold concentration bacteria are in active state or quorum state. In this article, we propose a mathematical model of quorum sensing systems and study this biological system numerically. Moreover, we compare the different numerical scheme with the batch culture ofP.aeruginosa. We observed a negative diffusion coefficient which plays an important role in the quorum sensing mechanism.

scholarly journals Quorum sensing controls thePseudomonas aeruginosaCRISPR-Cas adaptive immune system

2016 ◽  
Vol 114 (1) ◽  
pp. 131-135 ◽  
Author(s):  
Nina M. Høyland-Kroghsbo ◽  
Jon Paczkowski ◽  
Sampriti Mukherjee ◽  
Jenny Broniewski ◽  
Edze Westra ◽  
...  
Keyword(s):  
Immune System ◽  
Quorum Sensing ◽  
Cell Communication ◽  
Adaptive Immune System ◽  
Communication Process ◽  
Clinical Settings ◽  
Bacterial Populations ◽  
Adaptive Immune ◽  
Quorum Sensing Inhibitors ◽  
Adaptive Immune Systems

CRISPR-Cas are prokaryotic adaptive immune systems that provide protection against bacteriophage (phage) and other parasites. Little is known about how CRISPR-Cas systems are regulated, preventing prediction of phage dynamics in nature and manipulation of phage resistance in clinical settings. Here, we show that the bacteriumPseudomonas aeruginosaPA14 uses the cell–cell communication process, called quorum sensing, to activatecasgene expression, to increase CRISPR-Cas targeting of foreign DNA, and to promote CRISPR adaptation, all at high cell density. This regulatory mechanism ensures maximum CRISPR-Cas function when bacterial populations are at highest risk for phage infection. We demonstrate that CRISPR-Cas activity and acquisition of resistance can be modulated by administration of pro- and antiquorum-sensing compounds. We propose that quorum-sensing inhibitors could be used to suppress the CRISPR-Cas adaptive immune system to enhance medical applications, including phage therapies.

scholarly journals Look who's talking: communication and quorum sensing in the bacterial world

2007 ◽  
Vol 362 (1483) ◽  
pp. 1119-1134 ◽  
Author(s):  
Paul Williams ◽  
Klaus Winzer ◽  
Weng C Chan ◽  
Miguel Cámara
Keyword(s):  
Quorum Sensing ◽  
Bacterial Population ◽  
Response Regulator ◽  
Cell Communication ◽  
Threshold Concentration ◽  
Critical Threshold ◽  
Signal Molecules ◽  
Bacterial Cells ◽  
Environmental Threats ◽  
Generic Term

For many years bacteria were considered primarily as autonomous unicellular organisms with little capacity for collective behaviour. However, we now appreciate that bacterial cells are in fact, highly communicative. The generic term ‘quorum sensing’ has been adopted to describe the bacterial cell-to-cell communication mechanisms which co-ordinate gene expression usually, but not always, when the population has reached a high cell density. Quorum sensing depends on the synthesis of small molecules (often referred to as pheromones or autoinducers) that diffuse in and out of bacterial cells. As the bacterial population density increases, so does the synthesis of quorum sensing signal molecules, and consequently, their concentration in the external environment rises. Once a critical threshold concentration has been reached, a target sensor kinase or response regulator is activated (or repressed) so facilitating the expression of quorum sensing-dependent genes. Quorum sensing enables a bacterial population to mount a co-operative response that improves access to nutrients or specific environmental niches, promotes collective defence against other competitor prokaryotes or eukaryotic defence mechanisms and facilitates survival through differentiation into morphological forms better able to combat environmental threats. Quorum sensing also crosses the prokaryotic–eukaryotic boundary since quorum sensing-dependent signalling can be exploited or inactivated by both plants and mammals.

scholarly journals The PqsE-RhlR Interaction Regulates RhlR DNA Binding to Control Virulence Factor Production in Pseudomonas aeruginosa

2022 ◽  
Author(s):  
Kayla A. Simanek ◽  
Isabelle R. Taylor ◽  
Erica K. Richael ◽  
Erica Lasek-Nesselquist ◽  
Bonnie L. Bassler ◽  
...  
Keyword(s):  
Pseudomonas Aeruginosa ◽  
Dna Binding ◽  
Quorum Sensing ◽  
Virulence Factor ◽  
Cell Communication ◽  
Communication Process ◽  
Collective Behaviors ◽  
Factor Production ◽  
A Cell ◽  
Virulence Factor Production

Bacteria use a cell-cell communication process called quorum sensing (QS) to orchestrate collective behaviors. QS relies on the group-wide detection of molecules called autoinducers (AI).

scholarly journals Saccharomyces cerevisiae Requires CFF1 To Produce 4-Hydroxy-5-Methylfuran-3(2H)-One, a Mimic of the Bacterial Quorum-Sensing Autoinducer AI-2

mBio ◽  
2021 ◽  
Vol 12 (2) ◽  
Author(s):  
Julie S. Valastyan ◽  
Christina M. Kraml ◽  
Istvan Pelczer ◽  
Thomas Ferrante ◽  
Bonnie L. Bassler
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Quorum Sensing ◽  
Bacterial Species ◽  
Cell Communication ◽  
Communication Process ◽  
Signal Molecules ◽  
Catalytic Residue ◽  
Interspecies Communication ◽  
Content Type ◽  
Extracellular Signal

ABSTRACT Quorum sensing is a process of cell-to-cell communication that bacteria use to orchestrate collective behaviors. Quorum sensing depends on the production, release, and detection of extracellular signal molecules called autoinducers (AIs) that accumulate with increasing cell density. While most AIs are species specific, the AI called AI-2 is produced and detected by diverse bacterial species, and it mediates interspecies communication. We recently reported that mammalian cells produce an AI-2 mimic that can be detected by bacteria through the AI-2 receptor LuxP, potentially expanding the role of the AI-2 system to interdomain communication. Here, we describe a second molecule capable of interdomain signaling through LuxP, 4-hydroxy-5-methylfuran-3(2H)-one (MHF), that is produced by the yeast Saccharomyces cerevisiae. Screening the S. cerevisiae deletion collection revealed Cff1p, a protein with no known role, to be required for MHF production. Cff1p is proposed to be an enzyme, with structural similarity to sugar isomerases and epimerases, and substitution at the putative catalytic residue eliminated MHF production in S. cerevisiae. Sequence analysis uncovered Cff1p homologs in many species, primarily bacterial and fungal, but also viral, archaeal, and higher eukaryotic. Cff1p homologs from organisms from all domains can complement a cff1Δ S. cerevisiae mutant and restore MHF production. In all cases tested, the identified catalytic residue is conserved and required for MHF to be produced. These findings increase the scope of possibilities for interdomain interactions via AI-2 and AI-2 mimics, highlighting the breadth of molecules and organisms that could participate in quorum sensing. IMPORTANCE Quorum sensing is a cell-to-cell communication process that bacteria use to monitor local population density. Quorum sensing relies on extracellular signal molecules called autoinducers (AIs). One AI called AI-2 is broadly made by bacteria and used for interspecies communication. Here, we describe a eukaryotic AI-2 mimic, 4-hydroxy-5-methylfuran-3(2H)-one, (MHF), that is made by the yeast Saccharomyces cerevisiae, and we identify the Cff1p protein as essential for MHF production. Hundreds of viral, archaeal, bacterial, and eukaryotic organisms possess Cff1p homologs. This finding, combined with our results showing that homologs from all domains can replace S. cerevisiae Cff1p, suggests that like AI-2, MHF is widely produced. Our results expand the breadth of organisms that may participate in quorum-sensing-mediated interactions.

scholarly journals Quorum-Sensing Regulation of Antimicrobial Resistance in Bacteria

2020 ◽  
Vol 8 (3) ◽  
pp. 425 ◽  
Author(s):  
Xihong Zhao ◽  
Zixuan Yu ◽  
Tian Ding
Keyword(s):  
Quorum Sensing ◽  
Efflux Pump ◽  
Cell Communication ◽  
Quorum Quenching ◽  
Resistance Mechanisms ◽  
Resistant Bacteria ◽  
Microbial Resistance ◽  
Sensing Systems ◽  
Drug Resistant Bacteria ◽  
New Strategy

Quorum sensing is a cell-to-cell communication system that exists widely in the microbiome and is related to cell density. The high-density colony population can generate a sufficient number of small molecule signals, activate a variety of downstream cellular processes including virulence and drug resistance mechanisms, tolerate antibiotics, and harm the host. This article gives a general introduction to the current research status of microbial quorum-sensing systems, focuses on the role of quorum-sensing systems in regulating microbial resistance mechanisms, such as drug efflux pump and microbial biofilm formation regulation, and discusses a new strategy for the treatment of drug-resistant bacteria proposed by using quorum quenching to prevent microbial resistance.

scholarly journals Dialkylresorcinols as bacterial signaling molecules

2014 ◽  
Vol 112 (2) ◽  
pp. 572-577 ◽  
Author(s):  
Sophie Brameyer ◽  
Darko Kresovic ◽  
Helge B. Bode ◽  
Ralf Heermann
Keyword(s):  
Quorum Sensing ◽  
Bacterial Species ◽  
Cell Communication ◽  
Signaling Molecules ◽  
Human Pathogen ◽  
Human Pathogens ◽  
Bacterial Signaling ◽  
Sensing Systems ◽  
Luxr Homolog ◽  
Cell Cell

It is well recognized that bacteria communicate via small diffusible molecules, a process termed quorum sensing. The best understood quorum sensing systems are those that use acylated homoserine lactones (AHLs) for communication. The prototype of those systems consists of a LuxI-like AHL synthase and a cognate LuxR receptor that detects the signal. However, many proteobacteria possess LuxR receptors, yet lack any LuxI-type synthase, and thus these receptors are referred to as LuxR orphans or solos. In addition to the well-known AHLs, little is known about the signaling molecules that are sensed by LuxR solos. Here, we describe a novel cell–cell communication system in the insect and human pathogenPhotorhabdus asymbiotica. We identified the LuxR homolog PauR to sense dialkylresorcinols (DARs) and cyclohexanediones (CHDs) instead of AHLs as signals. The DarABC synthesis pathway produces the molecules, and the entire system emerged as important for virulence. Moreover, we have analyzed more than 90 differentPhotorhabdusstrains by HPLC/MS and showed that these DARs and CHDs are specific to the human pathogenP. asymbiotica. On the basis of genomic evidence, 116 other bacterial species are putative DAR producers, among them many human pathogens. Therefore, we discuss the possibility of DARs as novel and widespread bacterial signaling molecules and show that bacterial cell–cell communication goes far beyond AHL signaling in nature.

scholarly journals Traditional Chinese Medicine Tanreqing Inhibits Quorum Sensing Systems in Pseudomonas aeruginosa

2020 ◽  
Vol 11 ◽  
Author(s):  
Weifeng Yang ◽  
Qing Wei ◽  
Qian Tong ◽  
Kaiyu Cui ◽  
Gaiying He ◽  
...  
Keyword(s):  
Pseudomonas Aeruginosa ◽  
Chinese Medicine ◽  
Traditional Chinese Medicine ◽  
Quorum Sensing ◽  
Virulence Factors ◽  
Bacterial Infections ◽  
Cell Communication ◽  
Opportunistic Pathogen ◽  
Communication Process ◽  
Phenotypic Analysis

Pseudomonas aeruginosa is an opportunistic pathogen that can infect a wide variety of hosts including humans, plants, and animals. The production of virulence factors is the determinant of the infection paradigm and is under orchestrated regulation via cell-to-cell communication process called quorum sensing (QS). To disable QS circuits and prevent bacterial infections, a large battery of anti-QS agents, particularly from traditional Chinese medicine have been developed. Here, we used P. aeruginosa as a model microorganism to investigate the effect of traditional Chinese medicine Tanreqing (TRQ) formula on bacterial pathogenicity. Phenotypic analysis showed that TRQ treatment could completely inhibit the production of phenazine pyocyanin and moderately inhibit the production of virulence factors such as rhamnolipids, elastase, and alkaline protease. Further transcriptomic analyses revealed that TRQ treatment could significantly attenuate the expression of QS-regulated genes in P. aeruginosa and TRQ-treated P. aeruginosa regulon shared a large overlap with QS regulon. Component contribution to QS inhibition shed light on the indispensable role of all five components in TRQ formula. Further genetic analysis indicated that upstream regulators of QS systems, including two-component systems GacS/GacA and PprA/PprB, were both inhibited by TRQ treatment. Finally, our TRQ formula could efficiently protect Caenorhabditis elegans from killing by P. aeruginosa. Altogether, we have proved TRQ formula as an effective and specific agent to attenuate bacterial virulence and combat bacterial infections.

scholarly journals The role of coherence in bacterial communication

2017 ◽  
Author(s):  
Sarangam Majumdar ◽  
Sisir Roy
Keyword(s):  
Quorum Sensing ◽  
Ion Channel ◽  
Communication Systems ◽  
Phase Synchronization ◽  
Cell Communication ◽  
Communication Process ◽  
Bacterial Communication ◽  
Novel Approach ◽  
Electrical Signaling

Bacteria within biofilms can coordinate their behavior through distinct from of communication mechanism1. The well-established cell - to - cell signaling process in bacteria is known as quorum sensing through chemical signaling molecules2-5. Recently, another cell- to - cell communication process based on ion channel mediated electrical signaling6 has also been observed. In this article, we propose a novel approach to explain the role of coherence and phase synchronization in the cell – to – cell bacterial communication. The observable long – range coherent electrical signaling is species independent and it is caused by membrane – potential - dependent modulation of tumbling frequency7-9. Moreover, noise can play a constructive role in enhancing the synchronization of chaotic bacterial communication systems and noise associated with the opening and closing the gate of ion channel induce small kinetic viscosity that make a wave-like pattern in concentration profile of quorum sensing.

scholarly journals ThePseudomonas aeruginosaLasR quorum-sensing receptor balances ligand selectivity and sensitivity

2018 ◽  
Author(s):  
Amelia R. McCready ◽  
Jon E. Paczkowski ◽  
Brad R. Henke ◽  
Bonnie L. Bassler
Keyword(s):  
Quorum Sensing ◽  
Ligand Binding ◽  
Cell Communication ◽  
Communication Process ◽  
Signal Molecules ◽  
Ligand Selectivity ◽  
Existing Structures ◽  
Binding Domains ◽  
Extracellular Signal ◽  
Sensitivity And Selectivity

AbstractQuorum sensing is a cell-cell communication process that bacteria use to orchestrate group behaviors. Quorum sensing is mediated by extracellular signal molecules called autoinducers. Autoinducers are often structurally similar, raising questions concerning how bacteria distinguish among them. Here, we use thePseudomonas aeruginosaLasR quorum-sensing receptor to explore receptor sensitivity and selectivity. Alteration of LasR amino acid S129 increases ligand selectivity and decreases ligand sensitivity. Conversely, the L130F mutation enhances LasR sensitivity while reducing selectivity. We solve crystal structures of LasR ligand binding domains complexed with non-cognate autoinducers. Comparison to existing structures reveals that ligand selectivity/sensitivity is mediated by a flexible loop adjacent to the ligand binding site. We show thatP. aeruginosaharboring LasR variants with modified selectivity or sensitivity exhibit altered quorum-sensing responses. We suggest that an evolutionary trade-off between ligand selectivity and sensitivity enables LasR to optimally regulate quorum-sensing traits.

scholarly journals Saccharomyces cerevisiae Requires CFF1 to Produce 4-hydroxy-5-methylfuran-3(2H)-one, a Mimic of the Bacterial Quorum-Sensing Autoinducer AI-2

2020 ◽  
Author(s):  
Julie S. Valastyan ◽  
Christina M. Kraml ◽  
Istvan Pelczer ◽  
Thomas Ferrante ◽  
Bonnie L. Bassler
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Quorum Sensing ◽  
Mammalian Cells ◽  
Bacterial Species ◽  
Local Population ◽  
Cell Communication ◽  
Communication Process ◽  
Signal Molecules ◽  
Catalytic Residue ◽  
Extracellular Signal

AbstractQuorum sensing is a process of cell-to-cell communication that bacteria use to orchestrate collective behaviors. Quorum sensing depends on the production, release, and detection of extracellular signal molecules called autoinducers (AIs) that accumulate with increasing cell density. While most AIs are species-specific, the AI called AI-2 is produced and detected by diverse bacterial species and it mediates inter-species communication. We recently reported that mammalian cells produce an AI-2 mimic that can be detected by bacteria through the AI-2 receptor, LuxP, potentially expanding the role of the AI-2 system to inter-domain communication. Here, we describe a second molecule capable of inter-domain signaling through LuxP, 4-hydroxy-5-methylfuran-3(2H)-one (MHF) that is produced by the yeast Saccharomyces cerevisiae. Screening the S. cerevisiae deletion collection revealed Cff1p, a protein with no known role, to be required for MHF production. Cff1p is proposed to be an enzyme, possibly an epimerase or isomerase, and substitution at the putative catalytic residue eliminated MHF production in S. cerevisiae. Sequence analysis uncovered Cff1p homologs in many species, primarily bacterial and fungal, but also viral, archaeal, and higher eukaryotic. Cff1p homologs from organisms from all domains can complement a S. cerevisiae cff1Δ mutant and restore MHF production. In all test cases, the identified catalytic residue is conserved and required for MHF to be produced. These findings increase the scope of possibilities for inter-domain interactions via AI-2 and AI-2 mimics, highlighting the breadth of molecules and organisms that could participate in quorum sensing.ImportanceQuorum sensing is a cell-to-cell communication process that bacteria use to monitor local population density. Quorum sensing relies on extracellular signal molecules called autoinducers (AIs). One AI, called AI-2, is broadly made by bacteria and used for inter-species communication. Here, we describe a eukaryotic AI-2 mimic, 5-methylfuran-3(2H)-one, (MHF), that is made by the yeast Saccharomyces cerevisiae, and we identify the Cff1p protein as essential for MHF production. Hundreds of viral, archaeal, bacterial, and eukaryotic organisms possess Cff1p homologs. This finding, combined with our results showing that homologs from all domains can replace S. cerevisiae Cff1p, suggests that like AI-2, MHF is widely produced. Our results expand the breadth of organisms that may participate in quorum-sensing-mediated interactions.

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