scholarly journals Identification of Mechanisms of Functional Signaling Between Human Hippocampus Regions

2017 ◽  
Author(s):  
Ruben Sanchez-Romero ◽  
Joseph D. Ramsey ◽  
Jackson C. Liang ◽  
Clark Glymour

AbstractBackgroundStandard BOLD connectivity analyses depend on aggregating the signals of individual voxels within regions of interest (ROIs). In certain cases, this spatial aggregation implies a loss of valuable functional and anatomical information about subsets of voxels that drive the ROI level connectivity.New MethodWe use the FGES algorithm, a data-driven score-based graphical search method, to identify subsets of voxels that are chiefly responsible for exchanging signals between ROIs. We apply the method to high-resolution resting state functional magnetic resonance imaging (rs-fMRI) data from medial temporal lobe regions of interest of a single healthy individual measured repeated times over a year and a half.ResultsThe FGES algorithm recovered subsets of voxels within larger medial temporal lobe ROIs of entorhinal cortex and hippocampus subfields that show spatially consistency across different scanning sessions, and are statistically significant under tests that validate the role of these subsets as main drivers of effective connectivity between hippocampal regions of interest.Comparison with Existing MethodsIn contrast to standard functional connectivity methods, the FGES algorithm is robust against false positive connections produced by transitive closures of adjacencies (correlation methods) and common effect conditioning (Markov random field methods).ConclusionsThe FGES algorithm allows for identification of communication subsets of voxels driving the connectivity between regions of interest, recovering valuable anatomical and functional information that is lost when ROIs are aggregated. The FGES algorithm is specially suited for voxelwise connectivity research, given its short running time and scalability to big data problems.

2016 ◽  
Author(s):  
Ruben Sanchez-Romero ◽  
Joseph D. Ramsey ◽  
Jackson C. Liang ◽  
Kevin Jarbo ◽  
Clark Glymour

Standard BOLD connectivity analyses depend on aggregating the signals of individual voxel within regions of interest (ROIs). In certain cases, this aggregation implies a loss of valuable functional and anatomical information about sub-regions of voxels that drive the ROI level connectivity. We describe a data-driven statistical search method that identifies the voxels that are chiefly responsible for exchanging signals between regions of interest that are known to be effectively connected. We apply the method to high-resolution resting state functional magnetic resonance imaging (rs-fMRI) data from medial temporal lobe regions of interest of a single healthy individual measured repeated times over a year and a half. The method successfully recovered densely connected voxels within larger ROIs of entorhinal cortex and hippocampus subfields consistent with the well-known medial temporal lobe structural connectivity. To assess the performance of our method in more common scanning protocols we apply it to resting state fMRI data of corticostriatal regions of interest for 50 healthy individuals. The method recovered densely connected voxels within the caudate nucleus and the putamen in good qualitative agreement with structural connectivity measurements. We describe related methods for estimation of effective connections at the voxel level that merit investigation.


2006 ◽  
Vol 18 (10) ◽  
pp. 1654-1662 ◽  
Author(s):  
Indre V. Viskontas ◽  
Barbara J. Knowlton ◽  
Peter N. Steinmetz ◽  
Itzhak Fried

Different structures within the medial-temporal lobe likely make distinct contributions to declarative memory. In particular, several current psychological and computational models of memory predict that the hippocampus and parahippocampal regions play different roles in the formation and retrieval of declarative memories [e.g., Norman, K. A., & O'Reilly, R. C. Modeling hippocampal and neocortical contributions to recognition memory: A complementary-learning systems approach. Psychological Review, 110, 611–646, 2003]. Here, we examined the neuronal firing patterns in these two regions during recognition memory. Recording directly from neurons in humans, we find that cells in both regions respond to novel stimuli with an increase in firing (excitation). However, already on the second presentation of a stimulus, neurons in these regions show very different firing patterns. In the parahippocampal region there is dramatic decrease in the number of cells responding to the stimuli, whereas in the hippocampus there is recruitment of a large subset of neurons showing inhibitory (decrease from baseline firing) responses. These results suggest that inhibition is a mechanism used by cells in the human hippocampus to support sparse coding in mnemonic processing. The findings also provide further evidence for the division of labor in the medial-temporal lobe with respect to declarative memory processes.


2015 ◽  
Vol 35 (33) ◽  
pp. 11751-11760 ◽  
Author(s):  
Anthony I. Jang ◽  
Vincent D. Costa ◽  
Peter H. Rudebeck ◽  
Yogita Chudasama ◽  
Elisabeth A. Murray ◽  
...  

2005 ◽  
Vol 26 (3) ◽  
pp. 273
Author(s):  
P.M. Kemp ◽  
S.M.A. Hoffmann ◽  
C. Holmes ◽  
A. Ward ◽  
L. Bolt ◽  
...  

2005 ◽  
Vol 22 (3) ◽  
pp. 764-772 ◽  
Author(s):  
C. H. Salmond ◽  
J. Ashburner ◽  
A. Connelly ◽  
K. J. Friston ◽  
D. G. Gadian ◽  
...  

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