scholarly journals Hybrid systems approach to modeling stochastic dynamics of cell size

2016 ◽  
Author(s):  
Cesar Augusto Vargas-Garcia ◽  
Abhyudai Singh

A ubiquitous feature of all living cells is their growth over time followed by division into two daughter cells. How a population of genetically identical cells maintains size homeostasis, i.e., a narrow distribution of cell size, is an intriguing fundamental problem. We model size using a stochastic hybrid system, where a cell grows exponentially over time and probabilistic division events are triggered at discrete time intervals. Moreover, whenever these events occur, size is randomly partitioned among daughter cells. We first consider a scenario, where a timer (i.e., cell-cycle clock) that measures the time since the last division event regulates cellular growth and the rate of cell division. Analysis reveals that such a timer-driven system cannot achieve size homeostasis, in the sense that, the cell-to-cell size variation grows unboundedly with time. To explore biologically meaningful mechanisms for controlling size we consider three different classes of models: i) a size-dependent growth rate and timer-dependent division rate; ii) a constant growth rate and size-dependent division rate and iii) a constant growth rate and division rate that depends both on the cell size and timer. We show that each of these strategies can potentially achieve bounded intercellular size variation, and derive closed-form expressions for this variation in terms of underlying model parameters. Finally, we discuss how different organisms have adopted the above strategies for maintaining cell size homeostasis.

1993 ◽  
Vol 50 (10) ◽  
pp. 2166-2174 ◽  
Author(s):  
Pierre Pepin

This study presents an assessment of the size-dependent mortality hypothesis for larval fish from a multispecies survey of Conception Bay, Newfoundland, Canada. Mortality rates are estimated using a length-based method (per millimetre). The results from this survey are consistent with previous studies which indicate that losses decrease with increasing size of fish. However, for each species within this survey, mortality rates are constant. Comparison of mortality rates within species among surveys indicates that as the range of size categories sampled increases, the estimated mortality rates decrease, despite evidence of adequate fit to the length-based model. The findings indicate that previous relationships between size or stage and mortality of larval fish should be reevaluated. Length-based methodology used to estimate mortality rates of larval fish appears to provide biased estimates of this vital characteristic. It is suggested that using size as a proxy for biological age (i.e., assuming a constant growth rate) may be an invalid assumption. Future surveys will need to provide accurate information about the age structure of larvae sampled in order to properly estimate mortality rates.


2018 ◽  
Vol 59 (3) ◽  
pp. 293-312 ◽  
Author(s):  
B. VAN BRUNT ◽  
A. ALMALKI ◽  
T. LYNCH ◽  
A. ZAIDI

We consider an initial–boundary value problem that involves a partial differential equation with a functional term. The problem is motivated by a cell division model for size structured cell cohorts in which growth and division occur. Although much is known about the large time asymptotic behaviour of solutions to these problems for constant growth rates, general solution techniques are rare. We analyse the case where the growth rate is linear and the division rate is a monomial, and we develop a method to determine the general solution for a general class of initial data. The large time dynamics of solutions for this case are significantly different from the constant growth rate case. We show that solutions approach a time-dependent attracting solution that is periodic in the time variable.


2021 ◽  
Vol 28 (3) ◽  
pp. e18793
Author(s):  
Jônatas Lima ◽  
Railene Almeida ◽  
Edson Guilherme

We present new aspects of breeding biology of Gray-fronted Dove Leptotila rufaxilla, from five nests found between 2012 and 2014 in a lowland forest fragment in southwestern Brazil. The nests simple/platform shape were built at a mean height of 1.90 m above ground. The clutch size was two eggs white and elliptic, incubated for 15 days (based on three nests). We recorded predation in two nests still in incubation phase. Minimum hatch weight of nestlings was 10 g and young fledged with a mean mass of 56 g. The constant growth rate (K) of nestlings was 0.40 with a growth asymptote of 60.7 g. Daily survival rate, Mayfield and apparent nesting success in the incubation period was 90, 20 and 56%, respectively, while in the nestling period were all 100%. Our data and the contribution of citizen science showed that L. rufaxilla breeds over the year, mainly in the rainy season, both in southwestern Amazonia and in other regions of occurrence.


1981 ◽  
Vol 18 (01) ◽  
pp. 65-75 ◽  
Author(s):  
Aidan Sudbury

In cell-size-dependent growth the probabilistic rate of division of a cell into daughter-cells and the rate of increase of its size depend on its size. In this paper the expected number of cells in the population at time t is calculated for a variety of models, and it is shown that population growths slower and faster than exponential are both possible. When the cell sizes are bounded conditions are given for exponential growth.


IAWA Journal ◽  
1989 ◽  
Vol 10 (4) ◽  
pp. 417-426 ◽  
Author(s):  
L.G. Vysotskaya ◽  
E.A. Vaganov

Radial cell size of conifers of three speeies: Pinus sylvestris, Larix sibirica, and Larix gmelinii from natural stands in the south of the Krasnoyarsk region (USSR) have been measured with a semi-automated device. The main factors responsible for cell size variation have been determined. These are: age, growth rate, soil moisture, climatic changes and endogenous rhythm of cell growth. Age greatly affects the radial cell size in trees up to 30 years old. Growth rate only affects radial tracheid diameter in narrow rings of 0 to 0.5 mm. The main components of variation: soil moisture, climatic factors and a cyclic component have been estimated for pines from three different conditions of moisture: moist, moderately moist and dry. It was shown, that under optimal growth conditions the contribution of the endogenous component was more or less equal to that of the climatic component.


2012 ◽  
Vol 1454 ◽  
pp. 161-166 ◽  
Author(s):  
Nobuyuki Iwata ◽  
Yuta Watabe ◽  
Yoshito Tsuchiya ◽  
Kento. Norota ◽  
Takuya Hashimoto ◽  
...  

ABSTRACTThe LaFeO3 and CaFeOX layers are grown using highly dense target prepared by Pechini method, with which accurate growth rate is achieved. Since the LaFeO3demonstrates the obvious RHEED oscillation until the end of growth, constant growth rate, and the step-terraces structure, the LFO is employed as a buffer and/or reference layer to determine the required pulses to deposit the thickness we desire in the superlattice. Superlattices show the clear satellite peaks and Laue oscillation in the XRD spectra as well as the oscillations caused by the film thickness with a flat surface and superstructure with a flat interface in the x-ray reflection spectrum. The streaky RHEED patterns and step-terraces surface are consistent with the results of spectra using x-ray.


Cell Reports ◽  
2014 ◽  
Vol 7 (3) ◽  
pp. 705-714 ◽  
Author(s):  
Nikolai Slavov ◽  
Bogdan A. Budnik ◽  
David Schwab ◽  
Edoardo M. Airoldi ◽  
Alexander van Oudenaarden

1973 ◽  
Vol 10 (2) ◽  
pp. 289-298 ◽  
Author(s):  
Aidan Sudbury ◽  
Peter Clifford

A general model for the growth and division of cells in which the growth rate and division probability at any instant depend only on their size at that time is introduced. Conditions under which (a) the distribution of cell-size at division converges ergodically, (b) the sizes tend to 0 or ∞, are exhibited, and bounds to the correlation between the sizes at division of sister cells are given in a wide class of cases.


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