scholarly journals Speciation driven by hybridization and chromosomal plasticity in a wild yeast

2015 ◽  
Author(s):  
Jean-Baptiste Leducq ◽  
Lou Nielly-Thibault ◽  
Guillaume Charron ◽  
Chris Eberlein ◽  
Jukka-Pekka Verta ◽  
...  
Keyword(s):  
Rapid Evolution ◽  
Natural Populations ◽  
Secondary Contact ◽  
Hybrid Speciation ◽  
Hybrid Species ◽  
Chromosome Architecture ◽  
The North ◽  
Wild Yeast ◽  
Homoploid Hybrid ◽  
Powerful Mechanism

Hybridization is recognized as a powerful mechanism of speciation and a driving force in generating biodiversity. However, only few multicellular species, limited to a handful of plants and animals, have been shown to fulfill all the criteria of homoploid hybrid speciation. This lack of evidence could lead to the misconception that speciation by hybridization has a limited role in eukaryotes, particularly in single-celled organisms. Laboratory experiments have revealed that fungi such as budding yeasts can rapidly develop reproductive isolation and novel phenotypes through hybridization, showing that in principle homoploid speciation could occur in nature. Here we report a case of homoploid hybrid speciation in natural populations of the budding yeast Saccharomyces paradoxus inhabiting the North American forests. We show that the rapid evolution of chromosome architecture and an ecological context that led to secondary contact between nascent species drove the formation of an incipient hybrid species with a potentially unique ecological niche.

scholarly journals The Timing and Direction of Introgression Under the Multispecies Network Coalescent

Genetics ◽  
2019 ◽  
Vol 211 (3) ◽  
pp. 1059-1073 ◽  
Author(s):  
Mark S. Hibbins ◽  
Matthew W. Hahn
Keyword(s):  
Statistical Methods ◽  
Biological Process ◽  
Genomic Data ◽  
Hybrid Speciation ◽  
Saccharomyces Paradoxus ◽  
Genomic Signatures ◽  
Wild Yeast ◽  
Other Information ◽  
Homoploid Hybrid ◽  
New Statistics

Introgression is a pervasive biological process, and many statistical methods have been developed to infer its presence from genomic data. However, many of the consequences and genomic signatures of introgression remain unexplored from a methodological standpoint. Here, we develop a model for the timing and direction of introgression based on the multispecies network coalescent, and from it suggest new approaches for testing introgression hypotheses. We suggest two new statistics, D1 and D2, which can be used in conjunction with other information to test hypotheses relating to the timing and direction of introgression, respectively. D1 may find use in evaluating cases of homoploid hybrid speciation (HHS), while D2 provides a four-taxon test for polarizing introgression. Although analytical expectations for our statistics require a number of assumptions to be met, we show how simulations can be used to test hypotheses about introgression when these assumptions are violated. We apply the D1 statistic to genomic data from the wild yeast Saccharomyces paradoxus—a proposed example of HHS—demonstrating its use as a test of this model. These methods provide new and powerful ways to address questions relating to the timing and direction of introgression.

scholarly journals Genetic divergence and the number of hybridizing species affect the path to homoploid hybrid speciation

2018 ◽  
Vol 115 (39) ◽  
pp. 9761-9766 ◽  
Author(s):  
Aaron A. Comeault ◽  
Daniel R. Matute
Keyword(s):  
Genetic Diversity ◽  
Reproductive Isolation ◽  
Genetic Divergence ◽  
Adaptive Systems ◽  
Parental Species ◽  
Hybrid Speciation ◽  
Hybrid Species ◽  
Empirical Question ◽  
Homoploid Hybrid

Hybridization is often maladaptive and in some instances has led to the loss of biodiversity. However, hybridization can also promote speciation, such as during homoploid hybrid speciation, thereby generating biodiversity. Despite examples of homoploid hybrid species, the importance of hybridization as a speciation mechanism is still widely debated, and we lack a general understanding of the conditions most likely to generate homoploid hybrid species. Here we show that the level of genetic divergence between hybridizing species has a large effect on the probability that their hybrids evolve reproductive isolation. We find that populations of hybrids formed by parental species with intermediate levels of divergence were more likely to mate assortatively, and discriminate against their parental species, than those generated from weakly or strongly diverged parental species. Reproductive isolation was also found between hybrid populations, suggesting differential sorting of parental traits across populations. Finally, hybrid populations derived from three species were more likely to evolve reproductive isolation than those derived from two species, supporting arguments that hybridization-supplied genetic diversity can lead to the evolution of novel “adaptive systems” and promote speciation. Our results illustrate when we expect hybridization and admixture to promote hybrid speciation. Whether homoploid hybrid speciation is a common speciation mechanism in general remains an outstanding empirical question.

scholarly journals Hybridization and genome evolution I: The role of contingency during hybrid speciation

2013 ◽  
Vol 59 (5) ◽  
pp. 667-674 ◽  
Author(s):  
Fabrice Eroukhmanoff ◽  
Richard I. Bailey ◽  
Glenn-Peter Sætre
Keyword(s):  
Chromosome Number ◽  
Genome Evolution ◽  
Hybrid Speciation ◽  
Parent Species ◽  
Large Role ◽  
Hybrid Species ◽  
Intragenomic Conflict ◽  
Hybrid Swarms ◽  
Homoploid Hybrid

Abstract Homoploid hybrid speciation (HHS) involves the recombination of two differentiated genomes into a novel, functional one without a change in chromosome number. Theoretically, there are numerous ways for two parental genomes to recombine. Hence, chance may play a large role in the formation of a hybrid species. If these genome combinations can evolve rapidly following hybridization and sympatric situations are numerous, recurrent homoploid hybrid speciation is a possibility. We argue that three different, but not mutually exclusive, types of contingencies could influence this process. First, many of these “hopeful monsters” of recombinant parent genotypes would likely have low fitness. Only specific combinations of parental genomic contributions may produce viable, intra-fertile hybrid species able to accommodate potential constraints arising from intragenomic conflict. Second, ecological conditions (competition, geography of the contact zones or the initial frequency of both parent species) might favor different outcomes ranging from sympatric coexistence to the formation of hybrid swarms and ultimately hybrid speciation. Finally, history may also play an important role in promoting or constraining recurrent HHS if multiple hybridization events occur sequentially and parental divergence or isolation differs along this continuum. We discuss under which conditions HHS may occur multiple times in parallel and to what extent recombination and selection may fuse the parent genomes in the same or different ways. We conclude by examining different approaches that might help to solve this intriguing evolutionary puzzle.

scholarly journals The timing and direction of introgression under the multispecies network coalescent

2018 ◽  
Author(s):  
Mark S. Hibbins ◽  
Matthew W. Hahn
Keyword(s):  
Statistical Methods ◽  
Biological Process ◽  
Genomic Data ◽  
Hybrid Speciation ◽  
Saccharomyces Paradoxus ◽  
Genomic Signatures ◽  
Wild Yeast ◽  
Other Information ◽  
Homoploid Hybrid ◽  
New Statistics

AbstractIntrogression is a pervasive biological process, and many statistical methods have been developed to infer its presence from genomic data. However, many of the consequences and genomic signatures of introgression remain unexplored from a methodological standpoint. Here, we develop a model for the timing and direction of introgression based on the multispecies network coalescent, and from it suggest new approaches for testing introgression hypotheses. We suggest two new statistics, D1 and D2, which can be used in conjunction with other information to test hypotheses relating to the timing and direction of introgression, respectively. D1 may find use in evaluating cases of homoploid hybrid speciation, while D2 provides a four-taxon test for polarizing introgression. Although analytical expectations for our statistics require a number of assumptions to be met, we show how simulations can be used to test hypotheses about introgression when these assumptions are violated. We apply the D1 statistic to genomic data from the wild yeast Saccharomyces paradoxus, a proposed example of homoploid hybrid speciation, demonstrating its use as a test of this model. These methods provide new and powerful ways to address questions relating to the timing and direction of introgression.

scholarly journals The genomic and ecological context of hybridization affect the probability that symmetrical incompatibilities drive hybrid speciation

2017 ◽  
Author(s):  
Aaron A. Comeault
Keyword(s):  
Hybrid Zone ◽  
Genetic Architecture ◽  
Theoretical Work ◽  
Hybrid Speciation ◽  
Parent Species ◽  
Ecological Context ◽  
Linear Arrangement ◽  
Hybrid Species ◽  
Homoploid Hybrid ◽  
Linkage Relationships

AbstractDespite examples of homoploid hybrid species, theoretical work describing when, where, and how we expect homoploid hybrid speciation to occur remains relatively rare. Here I explore the probability of homoploid hybrid speciation due to “symmetrical incompatibilities” under different selective and genetic scenarios. Through simulation, I test how genetic architecture and selection acting on traits that do not themselves generate incompatibilities interact to affect the probability that hybrids evolve symmetrical incompatibilities with their parent species. Unsurprisingly, selection against admixture at ‘adaptive’ loci that are linked to loci that generate incompatibilities tends to reduce the probability of evolving symmetrical incompatibilities. By contrast, selection that favors admixed genotypes at adaptive loci can promote the evolution of symmetrical incompatibilities. The magnitude of these outcomes is affected by the strength of selection, aspects of genetic architecture such as linkage relationships and the linear arrangement of loci along a chromosome, and the amount of hybridization following the formation of a hybrid zone. These results highlight how understanding the nature of selection, aspects of the genetics of traits affecting fitness, and the strength of reproductive isolation between hybridizing taxa can all be used to inform when we expect to observe homoploid hybrid speciation due to symmetrical incompatibilities.

scholarly journals Diversification of mandarin citrus by hybrid speciation and apomixis

2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Guohong Albert Wu ◽  
Chikatoshi Sugimoto ◽  
Hideyasu Kinjo ◽  
Chika Azama ◽  
Fumimasa Mitsube ◽  
...  
Keyword(s):  
Genome Analysis ◽  
East Asian ◽  
Ryukyu Islands ◽  
Hybrid Speciation ◽  
Comparative Genome Analysis ◽  
Hybrid Species ◽  
The Ryukyu Islands ◽  
Homoploid Hybrid ◽  
Rapid Diffusion ◽  
Apomictic Reproduction

AbstractThe origin and dispersal of cultivated and wild mandarin and related citrus are poorly understood. Here, comparative genome analysis of 69 new east Asian genomes and other mainland Asian citrus reveals a previously unrecognized wild sexual species native to the Ryukyu Islands: C. ryukyuensis sp. nov. The taxonomic complexity of east Asian mandarins then collapses to a satisfying simplicity, accounting for tachibana, shiikuwasha, and other traditional Ryukyuan mandarin types as homoploid hybrid species formed by combining C. ryukyuensis with various mainland mandarins. These hybrid species reproduce clonally by apomictic seed, a trait shared with oranges, grapefruits, lemons and many cultivated mandarins. We trace the origin of apomixis alleles in citrus to mangshanyeju wild mandarins, which played a central role in citrus domestication via adaptive wild introgression. Our results provide a coherent biogeographic framework for understanding the diversity and domestication of mandarin-type citrus through speciation, admixture, and rapid diffusion of apomictic reproduction.

scholarly journals The role of parental and hybrid species in multiple introgression events: evidence of homoploid hybrid speciation inCentaurea(Cardueae, Asteraceae)

2014 ◽  
Vol 175 (3) ◽  
pp. 453-467 ◽  
Author(s):  
Giulia Mameli ◽  
Javier López-Alvarado ◽  
Emmanuele Farris ◽  
Alfonso Susanna ◽  
Rossella Filigheddu ◽  
...  
Keyword(s):  
Hybrid Speciation ◽  
Hybrid Species ◽  
Homoploid Hybrid

Present Status of the Salmonids Atlantic Salmon and Sea-Trout in the Dutch Part of the River Rhine

1994 ◽  
Vol 29 (3) ◽  
pp. 37-41 ◽  
Author(s):  
W. G. Cazemier
Keyword(s):  
Atlantic Salmon ◽  
Salmo Trutta ◽  
Natural Populations ◽  
River Rhine ◽  
Sea Trout ◽  
The Past ◽  
The North ◽  
Trout Population ◽  
The North Sea ◽  
Heavy Pollution

In the past, the anadromous salmonids, Atlantic salmon (Salmo salar) and sea-trout (Salmo trutta), have formed natural populations in the river Rhine. From the beginning of the nineteenth century onwards, the greater part of the drainage area of the river has been gradually altered from a more or less rural and agricultural area, into a highly industrialised one with subsequent industrialisation, river-engineering and heavy pollution. These developments are considered to be the major cause for the disappearance of the populations of anadromous salmonid fish in the 1950s. The water quality has recovered significantly during the past 25 years. From about 1975 onwards, this process gave rise to a recovery of the anadromous trout population. Results of recent studies of the sea-trout migration pattern are presented. They reveal that nowadays these salmonids can complete their up- and downstream migrations from the North Sea to places, situated at hundreds of kilometres upward the river and vica versa. The numbers of recorded Atlantic salmon and catch locations in inland waters are presented. They show a significant increase since 1989. These phenomena can be understood as promising signs of the recovery of the Rhine aquatic ecosystem.

Sign in / Sign up

Export Citation Format

Share Document