scholarly journals A computational approach to estimating nondisjunction frequency in Saccharomyces cerevisiae

2015 ◽  
Author(s):  
Daniel Chu ◽  
Sean M Burgess
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Model Organism ◽  
Computational Approach ◽  
Published Data ◽  
Wild Type ◽  
Homologous Chromosomes ◽  
Epistasis Analysis ◽  
Special Strain ◽  
Type Strains ◽  
Meiosis I

Errors segregating homologous chromosomes during meiosis result in the formation of aneuploid gametes and are the largest contributing factor to birth defects and spontaneous abortions in humans. Saccharomyces cerevisiae has long served as a model organism for studying the gene network supporting normal chromosome segregation. Current methods of measuring homolog nondisjunction frequencies are laborious and involve dissecting thousands of tetrads to detect missegregation of individually marked chromosomes. Here we describe a holistic computational approach to determine the relative contributions of meiosis I nondisjunction and random spore death in mutants with reduced spore viability. These values are based on best-fit distributions of 4, 3, 2, 1, and 0 viable-spore tetrads to observed distributions in mutant and wild-type strains. We show proof-of-principle using published data sets that the calculated average meiosis I nondisjunction frequency closely matches empirically determined values. This analysis also points to meiosis I nondisjunction as an intrinsic component of spore inviability in wild-type strains. We uncover two classes of mutants that show distinct relationships between nondisjunction death and random spore death. Class I mutants, including those with known defects in establishing and maintaining the physical engagement of homologous chromosomes display a 4-fold greater ratio of nondisjunction death to random spore death compared to Class II mutants, which include those with defects in sister chromatid cohesion. Low numbers of required tetrads facilitates epistasis analysis to probe genetic interactions. Finally the application of the R-Scripts does not require any special strain construction and can be applied to previously observed tetrad distributions.

scholarly journals Recombination Can Partially Substitute for SPO13 in Regulating Meiosis I in Budding Yeast

Genetics ◽  
2000 ◽  
Vol 155 (4) ◽  
pp. 1607-1621 ◽  
Author(s):  
Lisa Henninger Rutkowski ◽  
Rochelle Easton Esposito
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Nuclear Division ◽  
Crossing Over ◽  
Wild Type Allele ◽  
Null Mutant ◽  
Wild Type ◽  
Homologous Chromosomes ◽  
Chromosome Synapsis ◽  
Reductional Division ◽  
Meiosis I

Abstract Recombination and chromosome synapsis bring homologous chromosomes together, creating chiasmata that ensure accurate disjunction during reductional division. SPO13 is a key gene required for meiosis I (MI) reductional segregation, but dispensable for recombination, in Saccharomyces cerevisiae. Absence of SPO13 leads to single-division meiosis where reductional segregation is largely eliminated, but other meiotic events occur relatively normally. This phenotype allows haploids to produce viable meiotic products. Spo13p is thought to act by delaying nuclear division until sister centromeres/chromatids undergo proper cohesion for segregation to the same pole at MI. In the present study, a search for new spo13-like mutations that allow haploid meiosis recovered only new spo13 alleles. Unexpectedly, an unusual reduced-expression allele (spo13-23) was recovered that behaves similarly to a null mutant in haploids but to a wild-type allele in diploids, dependent on the presence of recombining homologs rather than on a diploid genome. This finding demonstrates that in addition to promoting accurate homolog disjunction, recombination can also function to partially substitute for SPO13 in promoting sister cohesion. Analysis of various recombination-defective mutants indicates that this contribution of recombination to reductional segregation requires full levels of crossing over. The implications of these results regarding SPO13 function are discussed.

scholarly journals Nonrecombinant meiosis I nondisjunction in Saccharomyces cerevisiae induced by tRNA ochre suppressors.

Genetics ◽  
1989 ◽  
Vol 123 (1) ◽  
pp. 81-95 ◽  
Author(s):  
E J Louis ◽  
J E Haber
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Mitotic Chromosome ◽  
Stop Codon ◽  
Fold Increase ◽  
Wild Type ◽  
Yeast Saccharomyces Cerevisiae ◽  
Nonsense Mutations ◽  
Chromosome Iii ◽  
Meiosis I ◽  
Chromosome Nondisjunction

Abstract The presence of the tRNA ochre suppressors SUP11 and SUP5 is found to induce meiosis I nondisjunction in the yeast Saccharomyces cerevisiae. The induction increases with increasing dosage of the suppressor and decreases in the presence of an antisuppressor. The effect is independent of the chromosomal location of SUP11. Each of five different chromosomes monitored exhibited nondisjunction at frequencies of 0.1%-1.1% of random spores, which is a 16-160-fold increase over wild-type levels. Increased nondisjunction is reflected by a marked increase in tetrads with two and zero viable spores. In the case of chromosome III, for which a 50-cM map interval was monitored, the resulting disomes are all in the parental nonrecombinant configuration. Recombination along chromosome III appears normal both in meioses that have no nondisjunction and in meioses for which there was nondisjunction of another chromosome. We propose that a proportion of one or more proteins involved in chromosome pairing, recombination or segregation are aberrant due to translational read-through of the normal ochre stop codon. Hygromycin B, an antibiotic that can suppress nonsense mutations via translational read-through, also induces nonrecombinant meiosis I nondisjunction. Increases in mistranslation, therefore, increase the production of aneuploids during meiosis. There was no observable effect of SUP11 on mitotic chromosome nondisjunction; however some disomes caused SUP11 ade2-ochre strains to appear white or red, instead of pink.

scholarly journals Influences of Histone Stoichiometry on the Target Site Preference of Retrotransposons Ty1 and Ty2 in Saccharomyces cerevisiae

Genetics ◽  
1996 ◽  
Vol 142 (3) ◽  
pp. 761-776 ◽  
Author(s):  
Lori A Rinckel ◽  
David J Garfinkel
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Promoter Region ◽  
Target Site ◽  
Site Preference ◽  
Wild Type ◽  
Histone Proteins ◽  
Protein Levels ◽  
In The Wild ◽  
Type Strains ◽  
Orientation Bias

Abstract In Saccharomyces cerevisiae, the target site specificity of the retrotransposon Ty1 appears to involve the Ty integration complex recognizing chromatin structures. To determine whether changes in chromatin structure affect Ty1 and Ty2 target site preference, we analyzed Ty transposition at the CAN1 locus in mutants containing altered levels of histone proteins. A Δhta1-htb1 mutant with decreased levels of H2A and H2B histone proteins showed a pattern of Ty1 and Ty2 insertions at CAN1 that was significantly different from that of both the wild-type and a Δhta2-htb2 mutant, which does not have altered histone protein levels. Altered levels of H2A and H2B proteins disrupted a dramatic orientation bias in the CAN1 promoter region. In the wild-type strains, few Ty1 and Ty2 insertions in the promoter region were oriented opposite to the direction of CAN1 transcription. In the Δhta1-htb1 background, however, numerous Ty1 and Ty2 insertions were in the opposite orientation clustered within the TATA region. This altered insertion pattern does not appear to be due to a bias caused by selecting canavanine resistant isolates in the different HTA1-HTB1 backgrounds. Our results suggest that reduced levels of histone proteins alter Ty target site preference and disrupt an asymmetric Ty insertion pattern.

Bioreduction of Some Common Carbonylic Compounds Mediated by Yeasts

2010 ◽  
Vol 65 (1-2) ◽  
pp. 1-9 ◽  
Author(s):  
Javier Silva ◽  
Julio Alarcón ◽  
Sergio A. Aguila ◽  
Joel B. Alderete
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Pichia Pastoris ◽  
Aqueous Medium ◽  
Ethyl Acetoacetate ◽  
Enantiomeric Excess ◽  
Optically Active ◽  
Environmentally Benign ◽  
Wild Type ◽  
Regeneration System ◽  
Type Strains

Bioreduction of several prochiral carbonylic compounds such as acetophenone (1), ethyl acetoacetate (2) and ethyl phenylpropionate (3) to the corresponding optically active secalcohols 1a - 3a was performed using wild-type strains of Pichia pastoris UBB 1500, Rhodotorula sp., and Saccharomyces cerevisiae. The reductions showed moderate to excellent conversion and high enantiomeric excess, in an extremely mild and environmentally benign manner in aqueous medium, using glucose as cofactor regeneration system. The obtained alcohols follow Prelog’s rule, but in the reduction of 1 with P. pastoris UBB 1500 the anti- Prelog enantiopreference was observed

scholarly journals Barrier Activity in Candida albicans Mediates Pheromone Degradation and Promotes Mating

2007 ◽  
Vol 6 (6) ◽  
pp. 907-918 ◽  
Author(s):  
Dana Schaefer ◽  
Pierre Côte ◽  
Malcolm Whiteway ◽  
Richard J. Bennett
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Candida Albicans ◽  
Cell Growth ◽  
Cell Fusion ◽  
Aspartyl Protease ◽  
Wild Type ◽  
Pheromone Activity ◽  
Important Regulator ◽  
Mutant Cells ◽  
Type Strains

ABSTRACT Mating in Candida albicans and Saccharomyces cerevisiae is regulated by the secretion of peptide pheromones that initiate the mating process. An important regulator of pheromone activity in S. cerevisiae is barrier activity, involving an extracellular aspartyl protease encoded by the BAR1 gene that degrades the alpha pheromone. We have characterized an equivalent barrier activity in C. albicans and demonstrate that the loss of C. albicans BAR1 activity results in opaque a cells exhibiting hypersensitivity to alpha pheromone. Hypersensitivity to pheromone is clearly seen in halo assays; in response to alpha pheromone, a lawn of C. albicans Δbar1 mutant cells produces a marked zone in which cell growth is inhibited, whereas wild-type strains fail to show halo formation. C. albicans mutants lacking BAR1 also exhibit a striking mating defect in a cells, but not in α cells, due to overstimulation of the response to alpha pheromone. The block to mating occurs prior to cell fusion, as very few mating zygotes were observed in mixes of Δbar1 a and α cells. Finally, in a barrier assay using a highly pheromone-sensitive strain, we were able to demonstrate that barrier activity in C. albicans is dependent on Bar1p. These studies reveal that a barrier activity to alpha pheromone exists in C. albicans and that the activity is analogous to that caused by Bar1p in S. cerevisiae.

scholarly journals Shugoshin Promotes Sister Kinetochore Biorientation in Saccharomyces cerevisiae

2008 ◽  
Vol 19 (3) ◽  
pp. 1199-1209 ◽  
Author(s):  
Brendan M. Kiburz ◽  
Angelika Amon ◽  
Adele L. Marston
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Chromosome Segregation ◽  
Minor Role ◽  
Meiotic Cell ◽  
Homologous Chromosomes ◽  
Cell Divisions ◽  
Sister Chromatids ◽  
Sister Kinetochore ◽  
A Minor ◽  
Meiosis I

Chromosome segregation must be executed accurately during both mitotic and meiotic cell divisions. Sgo1 plays a key role in ensuring faithful chromosome segregation in at least two ways. During meiosis this protein regulates the removal of cohesins, the proteins that hold sister chromatids together, from chromosomes. During mitosis, Sgo1 is required for sensing the absence of tension caused by sister kinetochores not being attached to microtubules emanating from opposite poles. Here we describe a differential requirement for Sgo1 in the segregation of homologous chromosomes and sister chromatids. Sgo1 plays only a minor role in segregating homologous chromosomes at meiosis I. In contrast, Sgo1 is important to bias sister kinetochores toward biorientation. We suggest that Sgo1 acts at sister kinetochores to promote their biorientation.

scholarly journals Conservative Duplication of Spindle Poles during Meiosis in Saccharomyces cerevisiae

2001 ◽  
Vol 183 (7) ◽  
pp. 2372-2375 ◽  
Author(s):  
Andreas Wesp ◽  
Susanne Prinz ◽  
Gerald R. Fink
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Spindle Pole Body ◽  
Spindle Pole ◽  
Spore Formation ◽  
Wild Type ◽  
Body Distribution ◽  
Spindle Poles ◽  
Pole Body ◽  
Spindle Pole Bodies ◽  
Type Strains

ABSTRACT During sporulation in diploid Saccharomyces cerevisiae, spindle pole bodies acquire the so-called meiotic plaque, a prerequisite for spore formation. Mpc70p is a component of the meiotic plaque and is thus essential for spore formation. We show here that MPC70/mpc70 heterozygous strains most often produce two spores instead of four and that these spores are always nonsisters. In wild-type strains, Mpc70p localizes to all four spindle pole bodies, whereas in MPC70/mpc70 strains Mpc70p localizes to only two of the four spindle pole bodies, and these are always nonsisters. Our data can be explained by conservative spindle pole body distribution in which the two newly synthesized meiosis II spindle pole bodies of MPC70/mpc70 strains lack Mpc70p.

Xylulose fermentation by mutant and wild-type strains of Zygosaccharomyces and Saccharomyces cerevisiae

2000 ◽  
Vol 53 (4) ◽  
pp. 376-382 ◽  
Author(s):  
A. Eliasson ◽  
E. Boles ◽  
B. Johansson ◽  
M. Österberg ◽  
J. M. Thevelein ◽  
...  
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Wild Type ◽  
Type Strains

scholarly journals The links between hypertrophy, reproductive potential and longevity in the Saccharomyces cerevisiae yeast.

2016 ◽  
Vol 63 (2) ◽  
Author(s):  
Mateusz Molon ◽  
Renata Zadrag-Tecza
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Cell Volume ◽  
Genetic Background ◽  
Wild Type Strain ◽  
Reproductive Potential ◽  
Model Organism ◽  
Reproductive Capacity ◽  
Wild Type ◽  
Yeast Saccharomyces Cerevisiae ◽  
Daughter Cells

The yeast Saccharomyces cerevisiae has long been used as a model organism for studying the basic mechanisms of aging. However, the main problem with the use of this unicellular fungus is the unit of "longevity". For all organisms, lifespan is expressed in units of time, while in the case of yeast it is defined by the number of daughter cells produced. Additionally, in yeast the phenotypic effects of mutations often show a clear dependence on the genetic background, suggesting the need for an analysis of strains representing different genetic backgrounds. Our results confirm the data presented in earlier papers that the reproductive potential is strongly associated with an increase in cell volume per generation. An excessive cell volume results in the loss of reproductive capacity. These data clearly support the hypertrophy hypothesis. The time of life of all analysed mutants, with the exception of sch9D, is the same as in the case of the wild-type strain. Interestingly, the 121% increase of the fob1D mutant's reproductive potential compared to the sfp1D mutant does not result in prolongation of the mutant's time of life (total lifespan).

Sign in / Sign up

Export Citation Format

Share Document