scholarly journals Low but significant genetic differentiation underlies biologically meaningful phenotypic divergence in a large Atlantic salmon population

2015 ◽  
Author(s):  
Tutku Aykanat ◽  
Susan E Johnston ◽  
Panu Orell ◽  
Eero Niemelä ◽  
Jaakko Erkinaro ◽  
...  
Keyword(s):  
Life History ◽  
Genetic Differentiation ◽  
Atlantic Salmon ◽  
Genetic Divergence ◽  
Natural Populations ◽  
Structured Populations ◽  
Life History Strategies ◽  
Adaptive Divergence ◽  
Juvenile Growth ◽  
Significant Genetic Differentiation

Despite decades of research assessing the genetic structure of natural populations, the biological meaning of low yet significant genetic divergence often remains unclear due to a lack of associated phenotypic and ecological information. At the same time, structured populations with low genetic divergence and overlapping boundaries can potentially provide excellent models to study adaptation and reproductive isolation in cases where high resolution genetic markers and relevant phenotypic and life history information are available. Here, we combined SNP-based population inference with extensive phenotypic and life history data to identify potential biological mechanisms driving fine scale sub-population differentiation in Atlantic salmon (Salmo salar) from the Teno River, a major salmon river in Europe. Two sympatrically occurring sub-populations had low but significant genetic differentiation (FST = 0.018) and displayed marked differences in the distribution of life history strategies, including variation in juvenile growth rate, age at maturity and size within age classes. Large, late-maturing individuals were virtually absent from one of the two sub-populations and there were significant differences in juvenile growth rates and size-at-age after oceanic migration between individuals in the respective sub-populations. Our findings suggest that different evolutionary processes affect each sub-population and that hybridization and subsequent selection may maintain low genetic differentiation without hindering adaptive divergence.

scholarly journals GENETIC DIFFERENTIATION BETWEEN GEOGRAPHICALLY DISTANT POPULATIONS OF DROSOPHILA MELANOGASTER

Genetics ◽  
1982 ◽  
Vol 101 (2) ◽  
pp. 235-256
Author(s):  
Rama S Singh ◽  
Donal A Hickey ◽  
Jean David
Keyword(s):  
Drosophila Melanogaster ◽  
Genetic Differentiation ◽  
Gene Frequency ◽  
Natural Populations ◽  
Allozyme Variation ◽  
Clinal Variation ◽  
Significant Genetic Differentiation ◽  
African Populations ◽  
Latitudinal Clines ◽  
North And South

ABSTRACT We have studied allozyme variation at 26 gene loci in nine populations of Drosophila melanogaster originating on five different continents. The distant populations show significant genetic differentiation. However, only half of the loci studied have contributed to this differentiation; the other half show identical patterns in all populations. The genetic differentiation in North American, European and African populations is correlated with the major climatic differences between north and south. These differences arise mainly from seven loci that show gene-frequency patterns suggestive of latitudinal clines in allele frequencies. The clinal variation is such that subtropical populations are more heterozygous than temperate populations. These results are discussed in relation to the selectionist and neutralist hypotheses of genetic variation in natural populations.

Effect of time of day, time of year, and life history strategy on time budgeting in juvenile Atlantic salmon, Salmo salar

1999 ◽  
Vol 56 (12) ◽  
pp. 2397-2403 ◽  
Author(s):  
Sveinn K Valdimarsson ◽  
Neil B Metcalfe
Keyword(s):  
Life History ◽  
Atlantic Salmon ◽  
Salmo Salar ◽  
Life History Strategy ◽  
Time Of Day ◽  
Life History Strategies ◽  
Foraging Efficiency ◽  
Atlantic Salmon Salmo Salar ◽  
Juvenile Atlantic Salmon ◽  
Time Of Year

Traditionally, behavioural studies on juvenile Atlantic salmon, Salmo salar, have been conducted during the day in summer. It is known that Atlantic salmon become nocturnal in winter, but very little is known about their behaviour at that time. Therefore, observations in a seminatural stream were carried out during the day and night, from February to June, comparing diel and seasonal differences in behaviour between fish adopting alternative life history strategies. The results showed a general trend for more activity in spring than in winter, and the fish were found to be foraging at surprisingly low light levels. There were differences in relative feeding rate between the life history strategies; the early migrant fish foraged mostly during the day whereas the delayed migrant fish did more foraging at night. There is some evidence that the early migrant fish made fewer feeding attempts over the winter, which is surprising, since they grow faster over that period. This suggests differences in foraging efficiency, which could contribute to the separation into these two life history strategies.

scholarly journals Evolutionary inference from QST-FST comparisons: disentangling local adaptation from altitudinal gradient selection in snapdragon plants

2018 ◽  
Author(s):  
Sara Marin ◽  
Juliette Archambeau ◽  
Vincent Bonhomme ◽  
Mylène Lascoste ◽  
Benoit Pujol
Keyword(s):  
Local Adaptation ◽  
Natural Populations ◽  
Common Garden ◽  
Global Scale ◽  
Structured Populations ◽  
Adaptive Divergence ◽  
Adaptation To Climate Change ◽  
Phenotypic Differentiation ◽  
Multiple Populations ◽  
Environmental Demand

ABSTRACTPhenotypic differentiation among natural populations can be explained by natural selection or by neutral processes such as drift. There are many examples in the literature where comparing the effects of these processes on multiple populations has allowed the detection of local adaptation. However, these studies rarely identify the agents of selection. Whether population adaptive divergence is caused by local features of the environment, or by the environmental demand emerging at a more global scale, for example along altitudinal gradients, is a question that remains poorly investigated. Here, we measured neutral genetic (FST) and quantitative genetic (QST) differentiation among 13 populations of snapdragon plants (Antirrhinum majus) in a common garden experiment. We found low but significant genetic differentiation at putatively neutral markers, which supports the hypothesis of either ongoing pervasive homogenisation via gene flow between diverged populations or reproductive isolation between disconnected populations. Our results also support the hypothesis of local adaptation involving phenological, morphological, reproductive and functional traits. They also showed that phenotypic differentiation increased with altitude for traits reflecting the reproduction and the phenology of plants, thereby confirming the role of such traits in their adaptation to environmental differences associated with altitude. Our approach allowed us to identify candidate traits for the adaptation to climate change in snapdragon plants. Our findings imply that environmental conditions changing with altitude, such as the climatic envelope, influenced the adaptation of multiple populations of snapdragon plants on the top of their adaptation to local environmental features. They also have implications for the study of adaptive evolution in structured populations because they highlight the need to disentangle the adaptation of plant populations to climate envelopes and altitude from the confounding effects of selective pressures acting specifically at the local scale of a population.

scholarly journals Low but significant genetic differentiation underlies biologically meaningful phenotypic divergence in a large Atlantic salmon population

2015 ◽  
Vol 24 (20) ◽  
pp. 5158-5174 ◽  
Author(s):  
Tutku Aykanat ◽  
Susan E. Johnston ◽  
Panu Orell ◽  
Eero Niemelä ◽  
Jaakko Erkinaro ◽  
...  
Keyword(s):  
Genetic Differentiation ◽  
Atlantic Salmon ◽  
Significant Genetic Differentiation ◽  
Phenotypic Divergence ◽  
Salmon Population

Genetic Divergence of Anadromous and Nonanadromous Atlantic Salmon (Salmo salar) in the River Namsen, Norway

1989 ◽  
Vol 46 (3) ◽  
pp. 406-409 ◽  
Author(s):  
Jukka Vuorinen ◽  
Ole Kristian Berg
Keyword(s):  
Life History ◽  
Atlantic Salmon ◽  
Salmo Salar ◽  
Genetic Divergence ◽  
Gene Diversity ◽  
Atlantic Salmon Salmo Salar ◽  
Large Numbers ◽  
Salmon Fry ◽  
Strong Founder Effect ◽  
Electrophoretic Data

Anadromous and nonanadromous Atlantic salmon, Salmo salar, coexist in the River Namsen in Norway. We studied genetic divergence between these two life history types by using electrophoretic data from 38 protein loci. Although allele frequencies differed significantly between the types at four loci no fixed allele frequency difference was observed. Nei's genetic distance between the life history types, however, was 0.01 a relatively high value for Atlantic salmon populations. The genetic differences observed between anadromous and nonanadromous salmon accounted for 18.3% of the total gene diversity. The five nonanadromous salmon samples formed two genetically different groups corresponding to the upper and lower ranges of the nonanadromous salmon in the river. The average observed heterozygosity was 3.1% for anadromous and 1.0% for nonanadromous salmon. The low heterozygosity in nonanadromous salmon probably reflects a strong founder effect. Stockings of large numbers of anadromous salmon fry to the upper reaches of the River Namsen have caused no detectable hybridization with nonanadromous salmon. Also downstream migrating nonanadromous salmon have apparently not made any important genetic contribution to the anadromous fish.

scholarly journals Maturation in Atlantic salmon (Salmo salar, Salmonidae): a synthesis of ecological, genetic, and molecular processes

2021 ◽  
Author(s):  
Kenyon B. Mobley ◽  
Tutku Aykanat ◽  
Yann Czorlich ◽  
Andrew House ◽  
Johanna Kurko ◽  
...  
Keyword(s):  
Climate Change ◽  
Life History ◽  
Atlantic Salmon ◽  
Salmo Salar ◽  
Economic Value ◽  
Life History Strategies ◽  
Life History Stages ◽  
Current State ◽  
Genomic Studies ◽  
Diversity Of Life

AbstractOver the past decades, Atlantic salmon (Salmo salar, Salmonidae) has emerged as a model system for sexual maturation research, owing to the high diversity of life history strategies, knowledge of trait genetic architecture, and their high economic value. The aim of this synthesis is to summarize the current state of knowledge concerning maturation in Atlantic salmon, outline knowledge gaps, and provide a roadmap for future work. We summarize the current state of knowledge: 1) maturation in Atlantic salmon takes place over the entire life cycle, starting as early as embryo development, 2) variation in the timing of maturation promotes diversity in life history strategies, 3) ecological and genetic factors influence maturation, 4) maturation processes are sex-specific and may have fitness consequences for each sex, 5) genomic studies have identified large-effect loci that influence maturation, 6) the brain-pituitary–gonadal axis regulates molecular and physiological processes of maturation, 7) maturation is a key component of fisheries, aquaculture, conservation, and management, and 8) climate change, fishing pressure, and other anthropogenic stressors likely have major effects on salmon maturation. In the future, maturation research should focus on a broader diversity of life history stages, including early embryonic development, the marine phase and return migration. We recommend studies combining ecological and genetic approaches will help disentangle the relative contributions of effects in different life history stages to maturation. Functional validation of large-effect loci should reveal how these genes influence maturation. Finally, continued research in maturation will improve our predictions concerning how salmon may adapt to fisheries, climate change, and other future challenges.

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