scholarly journals Shifts in diversification rates linked to biogeographic movement into new areas, an example of disparate continental distributions and a recent radiation in the Andes

2015 ◽  
Author(s):  
Simon Uribe-Convers ◽  
David C Tank
Keyword(s):  
New World ◽  
Special Focus ◽  
South American ◽  
The South ◽  
Diversification Rates ◽  
The Andes ◽  
Biogeographic History ◽  
History Of ◽  
Geographic Environment ◽  
American Clade

Premise of the study: Clade specific bursts in diversification are often associated with the evolution of key innovations. However, in groups with no obvious morphological innovations, observed upticks in diversification rates have also been attributed to the colonization of a new geographic environment. In this study, we explore the systematics, diversification dynamics, and historical biogeography of the plant clade Rhinantheae in the Orobanchaceae, with a special focus on the Andean clade of the genus Bartsia L.. Methods: We sampled taxa from across Rhinantheae, including a representative sample of Andean Bartsia species. Using standard phylogenetic methods, we reconstructed evolutionary relationships, inferred divergence times among the clades of Rhinantheae, elucidated their biogeographic history, and investigated diversification dynamics. Key results: We confirmed that the South American Bartsia species form a highly supported monophyletic group. The median crown age of Rhinantheae was determined to be ca. 30 Ma, and Europe played an important role in the biogeographic history of the lineages. South America was first reconstructed in the biogeographic analyses around 9 Ma, and with a median age of 2.59 Ma, this clade shows a significant uptick in diversification. Conclusions: Increased net diversification of the South American clade corresponds with biogeographic movement into the New World. This happened at a time when the Andes were reaching the necessary elevation to host an alpine environment. Although a specific route could not be identified with certainty, we provide plausible hypotheses to how the group colonized the New World.

scholarly journals Arrival and diversification of mabuyine skinks (Squamata: Scincidae) in the Neotropics based on a fossil-calibrated timetree

PeerJ ◽  
2017 ◽  
Vol 5 ◽  
pp. e3194 ◽  
Author(s):  
Anieli Guirro Pereira ◽  
Carlos G. Schrago
Keyword(s):  
South America ◽  
New World ◽  
Phenotypic Traits ◽  
South American ◽  
Ancestral State ◽  
American Continent ◽  
The South ◽  
Diversification Rates ◽  
Mode Of Reproduction ◽  
South American Continent

BackgroundThe evolution of South American Mabuyinae skinks holds significant biogeographic interest because its sister lineage is distributed across the African continent and adjacent islands. Moreover, at least one insular species,Trachylepis atlantica, has independently reached the New World through transoceanic dispersal. To clarify the evolutionary history of both Neotropical lineages, this study aimed to infer an updated timescale using the largest species and gene sampling dataset ever assembled for this group. By extending the analysis to the Scincidae family, we could employ fossil information to estimate mabuyinae divergence times and carried out a formal statistical biogeography analysis. To unveil macroevolutionary patterns, we also inferred diversification rates for this lineage and evaluated whether the colonization of South American continent significantly altered the mode of Mabuyinae evolution.MethodsA time-calibrated phylogeny was inferred under the Bayesian framework employing fossil information. This timetree was used to (i) evaluate the historical biogeography of mabuiyines using the statistical approach implemented in BioGeoBEARS; (ii) estimate macroevolutionary diversification rates of the South American Mabuyinae lineages and the patterns of evolution of selected traits, namely, the mode of reproduction, body mass and snout–vent length; (iii) test the hypothesis of differential macroevolutionary patterns in South American lineages in BAMM and GeoSSE; and (iv) re-evaluate the ancestral state of the mode of reproduction of mabuyines.ResultsOur results corroborated the hypothesis that the occupation of the South American continent by Mabuyinae consisted of two independent dispersion events that occurred between the Oligocene and the Miocene. We found significant differences in speciation rates between the New World and the remaining Mabuyinae clades only in GeoSSE. The influence of phenotypic traits on diversification rates was not supported by any method. Ancestral state reconstruction suggested that the ancestor of South American mabuyine was likely viviparous.DiscussionOur analyses further corroborated the existence of a transoceanic connection between Africa and South America in the Eocene/Oligocene period (Atlantogea). Following colonization of the isolated South America and subsequent dispersal through the continent by the ancestral mabuyine stock, we detected no difference in macroevolutionary regimes of New World clades. This finding argued against the ecological opportunity model as an explanation for the diversity of living mabuyines.

scholarly journals Comparative Analysis of Chlamydia psittaci Genomes Reveals the Recent Emergence of a Pathogenic Lineage with a Broad Host Range

mBio ◽  
2013 ◽  
Vol 4 (2) ◽  
Author(s):  
Timothy D. Read ◽  
Sandeep J. Joseph ◽  
Xavier Didelot ◽  
Brooke Liang ◽  
Lisa Patel ◽  
...  
Keyword(s):  
Chlamydia Trachomatis ◽  
New World ◽  
Evolutionary Dynamics ◽  
Chlamydia Psittaci ◽  
South American ◽  
Content Type ◽  
Sexually Transmitted ◽  
Genome Wide ◽  
Life Threatening ◽  
History Of

ABSTRACT Chlamydia psittaci is an obligate intracellular bacterium. Interest in Chlamydia stems from its high degree of virulence as an intestinal and pulmonary pathogen across a broad range of animals, including humans. C. psittaci human pulmonary infections, referred to as psittacosis, can be life-threatening, which is why the organism was developed as a bioweapon in the 20th century and is listed as a CDC biothreat agent. One remarkable recent result from comparative genomics is the finding of frequent homologous recombination across the genome of the sexually transmitted and trachoma pathogen Chlamydia trachomatis. We sought to determine if similar evolutionary dynamics occurred in C. psittaci. We analyzed 20 C. psittaci genomes from diverse strains representing the nine known serotypes of the organism as well as infections in a range of birds and mammals, including humans. Genome annotation revealed a core genome in all strains of 911 genes. Our analyses showed that C. psittaci has a history of frequently switching hosts and undergoing recombination more often than C. trachomatis. Evolutionary history reconstructions showed genome-wide homologous recombination and evidence of whole-plasmid exchange. Tracking the origins of recombinant segments revealed that some strains have imported DNA from as-yet-unsampled or -unsequenced C. psittaci lineages or other Chlamydiaceae species. Three ancestral populations of C. psittaci were predicted, explaining the current population structure. Molecular clock analysis found that certain strains are part of a clonal epidemic expansion likely introduced into North America by South American bird traders, suggesting that psittacosis is a recently emerged disease originating in New World parrots. IMPORTANCE Chlamydia psittaci is classified as a CDC biothreat agent based on its association with life-threatening lung disease, termed psittacosis, in humans. Because of the recent remarkable findings of frequent recombination across the genome of the human sexually transmitted and ocular trachoma pathogen Chlamydia trachomatis, we sought to determine if similar evolutionary dynamics occur in C. psittaci. Twenty C. psittaci genomes were analyzed from diverse strains that may play a pathogenic role in human disease. Evolution of the strains revealed genome-wide recombination occurring at a higher rate than for C. trachomatis. Certain strains were discovered to be part of a recent epidemic clonal expansion originating in South America. These strains may have been introduced into the United States from South American bird traders, suggesting that psittacosis is a recently emerged disease originating in New World parrots. Our analyses indicate that C. psittaci strains have a history of frequently switching hosts and undergoing recombination.

scholarly journals On the Pleistocene Snow-Line Depression in the Arid Regions of the South American Andes

1971 ◽  
Vol 10 (59) ◽  
pp. 255-267
Author(s):  
Stefan L. Hastenrath
Keyword(s):  
Arid Regions ◽  
South American ◽  
The South ◽  
Temperate Latitude ◽  
The Andes ◽  
Western Cordillera ◽  
Snow Line ◽  
The Pacific ◽  
The Arid Regions ◽  
June July

AbstractField observations during a journey through the arid regions of the South American Andes in June-July 1969 are evaluated in conjunction with available air photographs and reports from adjacent regions of the High Andes. Results indicate an increase of the Pleistocene snow-line depression in the western Cordillera from about 700 m at lat. 12° S. to more than 1 500 m at lat. 30° S. The Pleistocene snow-line depression decreases from the Pacific to the Atlantic side of the Andes, but particularly strongly so on the poleward fringe of the arid region. From this geomorphic evidence it is suggested that the atmospheric circulation during the glacial period was characterized by an Equatorward displacement of the boundary between tropical easterlies and temperate-latitude westerlies.

New conodont records of the Los Sombreros Formation (Cambrian–Ordovician) from the Western Precordillera, Argentina: biostratigraphic and palaeoenvironmental implications

2019 ◽  
Vol 157 (4) ◽  
pp. 539-550
Author(s):  
Gabriela Torre ◽  
Guillermo L. Albanesi
Keyword(s):  
Continental Margin ◽  
Carbonate Platform ◽  
South American ◽  
The South ◽  
Depositional History ◽  
The Matrix ◽  
Minimum Age ◽  
History Of ◽  
Lower Palaeozoic ◽  
Early Palaeozoic

AbstractThe presence of a carbonate platform that interfingers towards the west with slope facies allows for the identification of an ancient lower Palaeozoic continental margin in the Western Precordillera of Argentina. The Los Sombreros Formation is essential for the interpretation of the continental slope of the Precordillera, which accreted to Gondwana as part of the Cuyania Terrane in the early Palaeozoic. The age of these slope deposits is controversial; therefore, a precise biostratigraphic scheme is critical to reveal the evolution of the South American continental margin of Gondwana. The study of lithic deposits of two sections of the Los Sombreros Formation, the El Salto and Los Túneles sections, provides important information for further understanding the depositional history of the slope. At El Salto section, the conodonts recovered from an allochthonous block refer to the Cordylodus proavus Zone (upper Furongian). The conodonts recovered from the matrix of a calclithite bed of the Los Sombreros Formation in the Los Túneles section are assigned to the Lenodus variabilis Zone (early Darriwilian), providing a minimum age for this stratigraphic unit. In addition, clasts from this sample yielded conodonts from the Paltodus deltifer − Macerodus dianae zones (upper Tremadocian). The contrasting conodont colour alterations and preservation states from the elements of two latter records, coming from the same sample, argue the reworked clasts originated in the carbonate platform and later transported to the slope during the accretion process of the Precordilleran Terrane to the South American Gondwanan margin during the Middle–Late Ordovician.

scholarly journals The Dynamics of Bird Diversity in the New World

2020 ◽  
Vol 69 (6) ◽  
pp. 1180-1199 ◽  
Author(s):  
Antonin Machac
Keyword(s):  
Species Richness ◽  
New World ◽  
Dominant Role ◽  
Bird Diversity ◽  
Biodiversity Hotspots ◽  
Relative Importance ◽  
Diversification Rates ◽  
The Andes ◽  
The Rich ◽  
Over Time

Abstract Three prominent explanations have been proposed to explain the dramatic differences in species richness across regions and elevations, (i) time for speciation, (ii) diversification rates, and (iii) ecological limits. But the relative importance of these explanations and, especially, their interplay and possible synthesis remain largely elusive. Integrating diversification analyses, null models, and geographic information systems, I study avian richness across regions and elevations of the New World. My results reveal that even though the three explanations are differentially important (with ecological limits playing the dominant role), each contributes uniquely to the formation of richness gradients. Further, my results reveal the likely interplay between the explanations. They indicate that ecological limits hinder the diversification process, such that the accumulation of species within a region gradually slows down over time. Yet, it does not seem to converge toward a hard ceiling on regional richness. Instead, species-rich regions show suppressed, but continued, diversification, coupled with signatures of possible competition (esp. Neotropical lowlands). Conversely, species-poor, newly-colonized regions show fast diversification and weak to no signs of competition (esp. Nearctic highlands). These results held across five families of birds, across grid cells, biomes, and elevations. Together, my findings begin to illuminate the rich, yet highly consistent, interplay of the mechanisms that together shape richness gradients in the New World, including the most species-rich biodiversity hotspots on the planet, the Andes and the Amazon. [Biogeography; community; competition; macroevolution; phylogenetics; richness gradient.]

Microsatellites and 16S sequences corroborate phenotypic evidence of trans-Andean variation in the parasitoidMicroctonus hyperodae(Hymenoptera: Braconidae)

2005 ◽  
Vol 95 (4) ◽  
pp. 289-298 ◽  
Author(s):  
L.M. Winder ◽  
C.B. Phillips ◽  
C. Lenney-Williams ◽  
R.P. Cane ◽  
K. Paterson ◽  
...  
Keyword(s):  
Andes Mountains ◽  
South American ◽  
The South ◽  
The Andes ◽  
16S Gene ◽  
Pasture Grasses ◽  
Geographical Populations ◽  
Listronotus Bonariensis ◽  
Microctonus Hyperodae ◽  
Chilean Populations

AbstractEight South American geographical populations of the parasitoidMicroctonus hyperodaeLoan were collected in South America (Argentina, Brazil, Chile and Uruguay) and released in New Zealand for biological control of the weevilListronotus bonariensis(Kuschel), a pest of pasture grasses and cereals. DNA sequencing (16S, COI, 28S, ITS1, β-tubulin), RAPD, AFLP, microsatellite, SSCP and RFLP analyses were used to seek markers for discriminating between the South American populations. All of the South American populations were more homogeneous than expected. However, variation in microsatellites and 16S gene sequences corroborated morphological, allozyme and other phenotypic evidence of trans-Andes variation between the populations. The Chilean populations were the most genetically variable, while the variation present on the eastern side of the Andes mountains was a subset of that observed in Chile.

A new species ofCinclodesfrom the Espinhaço Range, southeastern Brazil: insights into the biogeographical history of the South American highlands

Ibis ◽  
2012 ◽  
Vol 154 (4) ◽  
pp. 738-755 ◽  
Author(s):  
Guilherme H. S. Freitas ◽  
Anderson V. Chaves ◽  
Lílian M. Costa ◽  
Fabrício R. Santos ◽  
Marcos Rodrigues
Keyword(s):  
New Species ◽  
Southeastern Brazil ◽  
South American ◽  
The South ◽  
Espinhaço Range ◽  
History Of ◽  
History Of The South ◽  
A New Species

scholarly journals A high-resolution history of the South American Monsoon from Last Glacial Maximum to the Holocene

2017 ◽  
Vol 7 (1) ◽  
Author(s):  
Valdir F. Novello ◽  
Francisco W. Cruz ◽  
Mathias Vuille ◽  
Nicolás M. Stríkis ◽  
R. Lawrence Edwards ◽  
...  
Keyword(s):  
High Resolution ◽  
Last Glacial Maximum ◽  
Glacial Maximum ◽  
South American ◽  
The South ◽  
The Holocene ◽  
South American Monsoon ◽  
Last Glacial ◽  
History Of ◽  
History Of The South
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