scholarly journals Whole genome transcriptomics reveals global effects including up-regulation of Francisella pathogenicity island gene expression during active stringent response in the highly virulent Francisella tularensis subsp. tularensis SCHU S4

Microbiology ◽  
2017 ◽  
Vol 163 (11) ◽  
pp. 1664-1679 ◽  
Author(s):  
Amber L. Murch ◽  
Paul J. Skipp ◽  
Peter L. Roach ◽  
Petra C. F. Oyston
Vaccine ◽  
2009 ◽  
Vol 27 (41) ◽  
pp. 5554-5561 ◽  
Author(s):  
Yu Cong ◽  
Jieh-Juen Yu ◽  
M. Neal Guentzel ◽  
Michael T. Berton ◽  
Janakiram Seshu ◽  
...  

2020 ◽  
Vol 8 (12) ◽  
pp. 1932
Author(s):  
Jörg Linde ◽  
Timo Homeier-Bachmann ◽  
Alexandra Dangel ◽  
Julia M. Riehm ◽  
David Sundell ◽  
...  

Francisella tularensis is the causative agent of the zoonotic disease tularemia. In Germany, most human infections are caused by contact with infected hares. The aim of this study was to characterize Francisella tularensis subsp. holarctica strains isolated from hares in Germany and to develop bioinformatics tools to analyze their genetic relatedness. In total, 257 German isolates—obtained mainly from hares (n = 233), other vertebrate animals, and ticks, but also from humans (n = 3)—were analyzed within this study. Publically available sequence data from 49 isolates were used to put our isolates into an epidemiological context and to compare isolates from natural foci and humans. Whole-genome sequences were analyzed using core-genome Multi-Locus-Sequence-Typing, canonical Single Nucleotide Polymorphism (SNP) typing and whole-genome SNP typing. An overall conformity of genotype clustering between the typing methods was found, albeit with a lower resolution for canonical single SNP typing. The subclade distribution, both on local and national levels, among strains from humans and hares was similar, suggesting circulation of the same genotypes both in animals and humans. Whilst close to identical isolates of the same subclade were found distributed over large areas, small geographical foci often harbored members of different subclades. In conclusion, although genomic high-resolution typing was shown to be robust, reproducible and allowed the identification of highly closely related strains, genetic profiling alone is not always conclusive for epidemiological linkage of F. tularensis strains.


PLoS ONE ◽  
2010 ◽  
Vol 5 (2) ◽  
pp. e9007 ◽  
Author(s):  
Ufuk Nalbantoglu ◽  
Khalid Sayood ◽  
Michael P. Dempsey ◽  
Peter C. Iwen ◽  
Stephen C. Francesconi ◽  
...  

2012 ◽  
Vol 81 (3) ◽  
pp. 850-861 ◽  
Author(s):  
Matthew E. Long ◽  
Stephen R. Lindemann ◽  
Jed A. Rasmussen ◽  
Bradley D. Jones ◽  
Lee-Ann H. Allen

ABSTRACTFrancisella tularensisis a facultative intracellular bacterial pathogen and the causative agent of tularemia. After infection of macrophages, the organism escapes from its phagosome and replicates to high density in the cytosol, but the bacterial factors required for these aspects of virulence are incompletely defined. Here, we describe the isolation and characterization ofFrancisella tularensissubsp.tularensisstrain Schu S4 mutants that lack functionaliglI,iglJ, orpdpC, three genes of theFrancisellapathogenicity island. Our data demonstrate that these mutants were defective for replication in primary human monocyte-derived macrophages and murine J774 cells yet exhibited two distinct phenotypes. TheiglIandiglJmutants were similar to one another, exhibited profound defects in phagosome escape and intracellular growth, and appeared to be trapped in cathepsin D-positive phagolysosomes. Conversely, thepdpCmutant avoided trafficking to lysosomes, phagosome escape was diminished but not ablated, and these organisms replicated in a small subset of infected macrophages. The phenotype of each mutant strain was reversed bytranscomplementation.In vivovirulence was assessed by intranasal infection of BALB/c mice. The mutants appeared avirulent, as all mice survived infection with 108CFUiglJ-orpdpC-deficient bacteria. Nevertheless, thepdpCmutant disseminated to the liver and spleen before being eliminated, whereas theiglJmutant did not. Taken together, our data demonstrate that the pathogenicity island genes tested are essential forF. tularensisSchu S4 virulence and further suggest thatpdpCmay play a unique role in this process, as indicated by its distinct intermediate phenotype.


2014 ◽  
Vol 82 (9) ◽  
pp. 3622-3635 ◽  
Author(s):  
Marie Lindgren ◽  
Linda Tancred ◽  
Igor Golovliov ◽  
Wayne Conlan ◽  
Susan M. Twine ◽  
...  

ABSTRACTPreviously, we identified a spontaneous, essentially avirulent mutant, FSC043, of the highly virulent strain SCHU S4 ofFrancisella tularensissubsp.tularensis. We have now characterized the phenotype of the mutant and the mechanisms of its attenuation in more detail. Genetic and proteomic analyses revealed that thepdpEgene and most of thepdpCgene were very markedly downregulated and, as previously demonstrated, that the strain expressed partially deleted and fusedfupAandfupBgenes. FSC043 showed minimal intracellular replication and induced no cell cytotoxicity. The mutant showed delayed phagosomal escape; at 18 h, colocalization with LAMP-1 was 80%, indicating phagosomal localization, whereas the corresponding percentages for SCHU S4 and the ΔfupAmutant were <10%. However, a small subset of the FSC043-infected cells contained up to 100 bacteria with LAMP-1 colocalization of around 30%. The unusual intracellular phenotype was similar to that of the ΔpdpCand ΔpdpCΔpdpEmutants. Complementation of FSC043 with the intactfupAandfupBgenes did not affect the phenotype, whereas complementation with thepdpCandpdpEgenes restored intracellular replication and led to marked virulence. Even higher virulence was observed after complementation with both double-gene constructs. After immunization with the FSC043 strain, moderate protection against respiratory challenge with the SCHU S4 strain was observed. In summary, FSC043 showed a highly unusual intracellular phenotype, and based on our findings, we hypothesize that the mutation in thepdpCgene makes an essential contribution to the phenotype.


2004 ◽  
Vol 186 (19) ◽  
pp. 6430-6436 ◽  
Author(s):  
Francis E. Nano ◽  
Na Zhang ◽  
Siobhán C. Cowley ◽  
Karl E. Klose ◽  
Karen K. M. Cheung ◽  
...  

ABSTRACT Francisella tularensis is a gram-negative, facultative intracellular pathogen that causes the highly infectious zoonotic disease tularemia. We have discovered a ca. 30-kb pathogenicity island of F. tularensis (FPI) that includes four large open reading frames (ORFs) of 2.5 to 3.9 kb and 13 ORFs of 1.5 kb or smaller. Previously, two small genes located near the center of the FPI were shown to be needed for intramacrophage growth. In this work we show that two of the large ORFs, located toward the ends of the FPI, are needed for virulence. Although most genes in the FPI encode proteins with amino acid sequences that are highly conserved between high- and low-virulence strains, one of the FPI genes is present in highly virulent type A F. tularensis, absent in moderately virulent type B F. tularensis, and altered in F. tularensis subsp. novicida, which is highly virulent for mice but avirulent for humans. The G+C content of a 17.7-kb stretch of the FPI is 26.6%, which is 6.6% below the average G+C content of the F. tularensis genome. This extremely low G+C content suggests that the DNA was imported from a microbe with a very low G+C-containing chromosome.


mBio ◽  
2013 ◽  
Vol 4 (1) ◽  
Author(s):  
Nihal A. Okan ◽  
Sabina Chalabaev ◽  
Tae-Hyun Kim ◽  
Avner Fink ◽  
Robin A. Ross ◽  
...  

ABSTRACT The highly virulent Francisella tularensis subsp. tularensis has been classified as a category A bioterrorism agent. A live vaccine strain (LVS) has been developed but remains unlicensed in the United States because of an incomplete understanding of its attenuation. Lipopolysaccharide (LPS) modification is a common strategy employed by bacterial pathogens to avoid innate immunity. A novel modification enzyme has recently been identified in F. tularensis and Helicobacter pylori. This enzyme, a two-component Kdo (3-deoxy-d-manno-octulosonic acid) hydrolase, catalyzes the removal of a side chain Kdo sugar from LPS precursors. The biological significance of this modification has not yet been studied. To address the role of the two-component Kdo hydrolase KdhAB in F. tularensis pathogenesis, a ΔkdhAB deletion mutant was constructed from the LVS strain. In intranasal infection of mice, the ΔkdhAB mutant strain had a 50% lethal dose (LD50) 2 log10 units higher than that of the parental LVS strain. The levels of the proinflammatory cytokines tumor necrosis factor alpha (TNF-α) and interleukin-1β (IL-1β) in bronchoalveolar lavage fluid were significantly higher (2-fold) in mice infected with the ΔkdhAB mutant than in mice infected with LVS. In vitro stimulation of bone marrow-derived macrophages with the ΔkdhAB mutant induced higher levels of TNF-α and IL-1β in a TLR2-dependent manner. In addition, TLR2−/− mice were more susceptible than wild-type mice to ΔkdhAB bacterial infection. Finally, immunization of mice with ΔkdhAB bacteria elicited a high level of protection against the highly virulent F. tularensis subsp. tularensis strain Schu S4. These findings suggest an important role for the Francisella Kdo hydrolase system in virulence and offer a novel mutant as a candidate vaccine. IMPORTANCE The first line of defense against a bacterial pathogen is innate immunity, which slows the progress of infection and allows time for adaptive immunity to develop. Some bacterial pathogens, such as Francisella tularensis, suppress the early innate immune response, killing the host before adaptive immunity can mature. To avoid an innate immune response, F. tularensis enzymatically modifies its lipopolysaccharide (LPS). A novel LPS modification—Kdo (3-deoxy-d-manno-octulosonic acid) saccharide removal—has recently been reported in F. tularensis. We found that the ∆kdhAB mutant was significantly attenuated in mice. Additionally, the mutant strain induced an early innate immune response in mice both in vitro and in vivo. Immunization of mice with this mutant provided protection against the highly virulent F. tularensis strain Schu S4. Thus, our study has identified a novel LPS modification important for microbial virulence. A mutant lacking this modification may be used as a live attenuated vaccine against tularemia.


2008 ◽  
Vol 76 (12) ◽  
pp. 5488-5499 ◽  
Author(s):  
Audrey Chong ◽  
Tara D. Wehrly ◽  
Vinod Nair ◽  
Elizabeth R. Fischer ◽  
Jeffrey R. Barker ◽  
...  

ABSTRACT Francisella tularensis is an intracellular pathogen that can survive and replicate within macrophages. Following phagocytosis and transient interactions with the endocytic pathway, F. tularensis rapidly escapes from its original phagosome into the macrophage cytoplasm, where it eventually replicates. To examine the importance of the nascent phagosome for the Francisella intracellular cycle, we have characterized early trafficking events of the F. tularensis subsp. tularensis strain Schu S4 in a murine bone marrow-derived macrophage model. Here we show that early phagosomes containing Schu S4 transiently interact with early and late endosomes and become acidified before the onset of phagosomal disruption. Inhibition of endosomal acidification with the vacuolar ATPase inhibitor bafilomycin A1 or concanamycin A prior to infection significantly delayed but did not block phagosomal escape and cytosolic replication, indicating that maturation of the early Francisella-containing phagosome (FCP) is important for optimal phagosomal escape and subsequent intracellular growth. Further, Francisella pathogenicity island (FPI) protein expression was induced during early intracellular trafficking events. Although inhibition of endosomal acidification mimicked the early phagosomal escape defects caused by mutation of the FPI-encoded IglCD proteins, it did not inhibit the intracellular induction of FPI proteins, demonstrating that this response is independent of phagosomal pH. Altogether, these results demonstrate that early phagosomal maturation is required for optimal phagosomal escape and that the early FCP provides cues other than intravacuolar pH that determine intracellular induction of FPI proteins.


2004 ◽  
Vol 72 (5) ◽  
pp. 3042-3047 ◽  
Author(s):  
Horacio Gil ◽  
Jorge L. Benach ◽  
David G. Thanassi

ABSTRACT Francisella tularensis is a highly infectious gram-negative bacterium with potential for use as a bioweapon. Analysis of the F. tularensis live vaccine strain (LVS) ultrastructure by electron microscopy revealed the presence of long, thin fibers, similar in appearance to type 4 pili. The highly virulent F. tularensis Schu S4 strain was found to contain type 4 pilus genes, and we confirmed that these genes are present and expressed in the LVS.


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