scholarly journals Investing in evolutionary history: implementing a phylogenetic approach for mammal conservation

2011 ◽  
Vol 366 (1578) ◽  
pp. 2611-2622 ◽  
Author(s):  
Ben Collen ◽  
Samuel T. Turvey ◽  
Carly Waterman ◽  
Helen M. R. Meredith ◽  
Tyler S. Kuhn ◽  
...  
Keyword(s):  
Evolutionary History ◽  
Extinction Risk ◽  
Mammalian Species ◽  
Iucn Red List ◽  
Composite Measure ◽  
Extinction Rates ◽  
Evolutionary Distinctiveness ◽  
Global Extinction ◽  
Mammal Conservation ◽  
The Impact

Under the impact of human activity, global extinction rates have risen a thousand times higher than shown in the fossil record. The resources available for conservation are insufficient to prevent the loss of much of the world's threatened biodiversity during this crisis. Conservation planners have been forced to prioritize their protective activities, in the context of great uncertainty. This has become known as ‘the agony of choice’. A range of methods have been proposed for prioritizing species for conservation attention; one of the most strongly supported is prioritizing those species that maximize phylogenetic distinctiveness (PD). We evaluate how a composite measure of extinction risk and phylogenetic isolation (EDGE) has been used to prioritize species according to their degree of unique evolutionary history (evolutionary distinctiveness, ED) weighted by conservation urgency (global endangerment, GE). We review PD-based approaches and provide an updated list of EDGE mammals using the 2010 IUCN Red List. We evaluate how robust this method is to changes in phylogenetic uncertainty, knowledge of taxonomy and extinction risk, and examine how mammalian species that rank highly in EDGE score are representative of the collective from which they are drawn.

scholarly journals The dynamics underlying avian extinction trajectories forecast a wave of extinctions

2019 ◽  
Vol 15 (12) ◽  
pp. 20190633 ◽  
Author(s):  
Melanie J. Monroe ◽  
Stuart H. M. Butchart ◽  
Arne O. Mooers ◽  
Folmer Bokma
Keyword(s):  
Extinction Risk ◽  
Population Decline ◽  
Bird Species ◽  
Iucn Red List ◽  
Red List ◽  
Extinction Rate ◽  
Critically Endangered Species ◽  
Extinction Rates ◽  
Historical Times ◽  
Risk Categories

Population decline is a process, yet estimates of current extinction rates often consider just the final step of that process by counting numbers of species lost in historical times. This neglects the increased extinction risk that affects a large proportion of species, and consequently underestimates the effective extinction rate. Here, we model observed trajectories through IUCN Red List extinction risk categories for all bird species globally over 28 years, and estimate an overall effective extinction rate of 2.17 × 10 −4 /species/year. This is six times higher than the rate of outright extinction since 1500, as a consequence of the large number of species whose status is deteriorating. We very conservatively estimate that global conservation efforts have reduced the effective extinction rate by 40%, but mostly through preventing critically endangered species from going extinct rather than by preventing species at low risk from moving into higher-risk categories. Our findings suggest that extinction risk in birds is accumulating much more than previously appreciated, but would be even greater without conservation efforts.

scholarly journals Tetrapods on the EDGE: Overcoming data limitations to identify phylogenetic conservation priorities

2017 ◽  
Author(s):  
Rikki Gumbs ◽  
Claudia L. Gray ◽  
Oliver R. Wearn ◽  
Nisha R. Owen
Keyword(s):  
Extinction Risk ◽  
Phylogenetic Analyses ◽  
Iucn Red List ◽  
New Method ◽  
Conservation Priorities ◽  
Conservation Action ◽  
Biodiversity Crisis ◽  
Data Limitations ◽  
Evolutionary Distinctiveness ◽  
Conservation Prioritisation

AbstractThe scale of the ongoing biodiversity crisis requires both effective conservation prioritisation and urgent action. The EDGE metric, which prioritises species based on their Evolutionary Distinctiveness (ED) and Global Endangerment (GE), relies on adequate phylogenetic and extinction risk data to generate meaningful priorities for conservation. However, comprehensive phylogenetic analyses of large clades are extremely rare and, even when available, become quickly out-of-date due to the rapid rate of species descriptions and taxonomic revisions. Thus, it is important that conservationists can use the available data to incorporate evolutionary history into conservation prioritisation. We compared published and new methods to impute ED for species missing from a phylogeny whilst simultaneously correcting the ED scores of their close taxonomic relatives. We found that following artificial removal of species from a phylogeny, the new method provided the closest estimates of their “true” score, differing from the true ED score by an average of less than 1%, compared to the 31% and 38% difference of the previous imputation methods. Previous methods also substantially under- and over-estimated scores as more species were artificially removed from a phylogeny. We therefore used the new method to estimate ED scores for all tetrapods. From these scores we updated EDGE prioritisation rankings for all tetrapod species with IUCN Red List assessments, including the first EDGE prioritisation for reptiles. Further, we identified criteria to identify robust priority species in an effort to further inform conservation action whilst limiting uncertainty and anticipating future phylogenetic advances.

Using Phylogenetic Information to Make Better Conservation Decisions

2016 ◽  
Author(s):  
Marc W. Cadotte ◽  
T. Jonathan Davies
Keyword(s):  
Conservation Biology ◽  
Evolutionary History ◽  
Extinction Risk ◽  
Species Conservation ◽  
Phylogenetic Information ◽  
Conservation Prioritization ◽  
Evolutionary Distinctiveness ◽  
Living Organisms ◽  
Near Future ◽  
Conservation Decisions

This chapter explains how phylogenetic information can be used to make better conservation decisions. Evidence shows that human-caused climate change is likely to be the dominant cause of extinction in the near future. Phylogeny can provide a powerful tool for aiding decision making in species conservation. The chapter first considers the importance of preserving evolutionary history by focusing on the tree of life, the phylogenetic tree connecting all living organisms that provides a powerful metaphor for conservation biology. It then examines phylogenetically based metrics for quantifying evolutionary history, including phylogenetic diversity for evaluating sites and evolutionary distinctiveness for comparing species. It also discusses the integration of evolutionary history with extinction probabilities for conservation prioritization using relative extinction risk to weight evolutionary distinctiveness, or EDGE (evolutionarily distinct and globally endangered). Finally, it describes how to prioritize biodiversity hotspots of evolutionary distinctiveness and how to apply metrics to conservation prioritization.

scholarly journals Iterative evolution of large-bodied hypercarnivory in canids benefits species but not clades

2020 ◽  
Vol 3 (1) ◽  
Author(s):  
Mairin A. Balisi ◽  
Blaire Van Valkenburgh
Keyword(s):  
Extinction Risk ◽  
Large Body ◽  
Costs And Benefits ◽  
Ecological Specialization ◽  
Large Body Size ◽  
The Past ◽  
Extinction Rates ◽  
The Rich ◽  
Iterative Evolution ◽  
The Impact

AbstractEcological specialization has costs and benefits at various scales: traits benefitting an individual may disadvantage its population, species or clade. In particular, large body size and hypercarnivory (diet over 70% meat) have evolved repeatedly in mammals; yet large hypercarnivores are thought to be trapped in a macroevolutionary “ratchet”, marching unilaterally toward decline. Here, we weigh the impact of this specialization on extinction risk using the rich fossil record of North American canids (dogs). In two of three canid subfamilies over the past 40 million years, diversification of large-bodied hypercarnivores appears constrained at the clade level, biasing specialized lineages to extinction. However, despite shorter species durations, extinction rates of large hypercarnivores have been mostly similar to those of all other canids. Extinction was size- and carnivory-selective only at the end of the Pleistocene epoch 11,000 years ago, suggesting that large hypercarnivores were not disadvantaged at the species level before anthropogenic influence.

Correlates of ecological-niche diversity and extinction risk of amphibians in China under climate change

2017 ◽  
Vol 30 (6) ◽  
pp. 414 ◽  
Author(s):  
Youhua Chen ◽  
Tania Escalante
Keyword(s):  
Extinction Risk ◽  
Variation Partitioning ◽  
Iucn Red List ◽  
Least Square ◽  
Ecological Niches ◽  
Amphibian Species ◽  
Phylogenetically Independent Contrasts ◽  
Niche Diversity ◽  
Evolutionary Distinctiveness ◽  
Negative Role

In the present study, we measured spatiotemporal properties of ecological niches of amphibians in China and tested the relative importance of various niche-diversity metrics for explaining the evolutionary distinctiveness-weighted extinction risk (EDGE) of amphibian species. We applied the hierarchical partitioning technique on the phylogenetically independent contrasts of the niche covariates and EDGE of amphibians, for the purpose of removing the influence of evolutionary inertia among species. As a comparison, phylogenetic least-square general regression (PLGS) was also conducted. The results showed that EDGE was high for those amphibian species of China identified as Critically Endangered or Endangered on the IUCN Red List. Niche fragmentation dimension (NFD) and niche position (NP) were the top two predictors across partial correlation analyses, hierarchical variation partitioning, PLGS and multiple regression analyses. Most temporal niche properties were not significantly associated with the EDGE index of amphibians. Variation partitioning analysis showed that the spatial component of niche measures explained the largest proportion of total variation in EDGE (~31%), whereas the temporal component of niche properties explained ~8% of the variation. The significantly negative role of NFD and extinction risk of amphibians in China may be attributed to a reduced rescue effect, habitat geometry, and local extinction in species with large and continuous distributional ranges.

scholarly journals Endemic Juniperus Montane Species Facing Extinction Risk under Climate Change in Southwest China: Integrative Approach for Conservation Assessment and Prioritization

Biology ◽  
2021 ◽  
Vol 10 (1) ◽  
pp. 63
Author(s):  
Mohammed A. Dakhil ◽  
Marwa Waseem A. Halmy ◽  
Walaa A. Hassan ◽  
Ali El-Keblawy ◽  
Kaiwen Pan ◽  
...  
Keyword(s):  
Climate Change ◽  
Potential Distribution ◽  
Extinction Risk ◽  
In Situ Conservation ◽  
Integrative Approach ◽  
Conservation Assessment ◽  
Distribution Models ◽  
Area Of Occupancy ◽  
Annual Range ◽  
The Impact

Climate change is an important driver of biodiversity loss and extinction of endemic montane species. In China, three endemic Juniperus spp. (Juniperuspingii var. pingii, J.tibetica, and J.komarovii) are threatened and subjected to the risk of extinction. This study aimed to predict the potential distribution of these three Juniperus species under climate change and dispersal scenarios, to identify critical drivers explaining their potential distributions, to assess the extinction risk by estimating the loss percentage in their area of occupancy (AOO), and to identify priority areas for their conservation in China. We used ensemble modeling to evaluate the impact of climate change and project AOO. Our results revealed that the projected AOOs followed a similar trend in the three Juniperus species, which predicted an entire loss of their suitable habitats under both climate and dispersal scenarios. Temperature annual range and isothermality were the most critical key variables explaining the potential distribution of these three Juniperus species; they contribute by 16–56.1% and 20.4–38.3%, respectively. Accounting for the use of different thresholds provides a balanced approach for species distribution models’ applications in conservation assessment when the goal is to assess potential climatic suitability in new geographical areas. Therefore, south Sichuan and north Yunnan could be considered important priority conservation areas for in situ conservation and search for unknown populations of these three Juniperus species.

scholarly journals Global extinction risk for seahorses, pipefishes and their near relatives (Syngnathiformes)

Oryx ◽  
2021 ◽  
pp. 1-10
Author(s):  
Riley A. Pollom ◽  
Gina M. Ralph ◽  
Caroline M. Pollock ◽  
Amanda C.J. Vincent
Keyword(s):  
Threatened Species ◽  
Habitat Degradation ◽  
Extinction Risk ◽  
Conservation Status ◽  
Field Research ◽  
Selective Extraction ◽  
Iucn Red List ◽  
Point Estimate ◽  
Conservation Action ◽  
Data Deficient

Abstract Few marine taxa have been comprehensively assessed for their conservation status, despite heavy pressures from fishing, habitat degradation and climate change. Here we report on the first global assessment of extinction risk for 300 species of syngnathiform fishes known as of 2017, using the IUCN Red List criteria. This order of bony teleosts is dominated by seahorses, pipefishes and seadragons (family Syngnathidae). It also includes trumpetfishes (Aulostomidae), shrimpfishes (Centriscidae), cornetfishes (Fistulariidae) and ghost pipefishes (Solenostomidae). At least 6% are threatened, but data suggest a mid-point estimate of 7.9% and an upper bound of 38%. Most of the threatened species are seahorses (Hippocampus spp.: 14/42 species, with an additional 17 that are Data Deficient) or freshwater pipefishes of the genus Microphis (2/18 species, with seven additional that are Data Deficient). Two species are Near Threatened. Nearly one-third of syngnathiformes (97 species) are Data Deficient and could potentially be threatened, requiring further field research and evaluation. Most species (61%) were, however, evaluated as Least Concern. Primary threats to syngnathids are (1) overexploitation, primarily by non-selective fisheries, for which most assessments were determined by criterion A (Hippocampus) and/or (2) habitat loss and degradation, for which assessments were determined by criterion B (Microphis and some Hippocampus). Threatened species occurred in most regions but more are found in East and South-east Asia and in South African estuaries. Vital conservation action for syngnathids, including constraining fisheries, particularly non-selective extraction, and habitat protection and rehabilitation, will benefit many other aquatic species.

scholarly journals A Novel Rubi-Like Virus in the Pacific Electric Ray (Tetronarce californica) Reveals the Complex Evolutionary History of the Matonaviridae

Viruses ◽  
2021 ◽  
Vol 13 (4) ◽  
pp. 585
Author(s):  
Rebecca M. Grimwood ◽  
Edward C. Holmes ◽  
Jemma L. Geoghegan
Keyword(s):  
Evolutionary History ◽  
Mammalian Species ◽  
Virus Transmission ◽  
Health Concern ◽  
Virus Species ◽  
Vast Number ◽  
The Pacific ◽  
Positive Sense ◽  
History Of ◽  
Fish Viruses

Rubella virus (RuV) is the causative agent of rubella (“German measles”) and remains a global health concern. Until recently, RuV was the only known member of the genus Rubivirus and the only virus species classified within the Matonaviridae family of positive-sense RNA viruses. Recently, two new rubella-like matonaviruses, Rustrela virus and Ruhugu virus, have been identified in several mammalian species, along with more divergent viruses in fish and reptiles. To screen for the presence of additional novel rubella-like viruses, we mined published transcriptome data using genome sequences from Rubella, Rustrela, and Ruhugu viruses as baits. From this, we identified a novel rubella-like virus in a transcriptome of Tetronarce californica—order Torpediniformes (Pacific electric ray)—that is more closely related to mammalian Rustrela virus than to the divergent fish matonavirus and indicative of a complex pattern of cross-species virus transmission. Analysis of host reads confirmed that the sample analysed was indeed from a Pacific electric ray, and two other viruses identified in this animal, from the Arenaviridae and Reoviridae, grouped with other fish viruses. These findings indicate that the evolutionary history of the Matonaviridae is more complex than previously thought and highlights the vast number of viruses that remain undiscovered.

scholarly journals Conservation Status of Marine Biodiversity in Oceania: An Analysis of Marine Species on the IUCN Red List of Threatened Species

2011 ◽  
Vol 2011 ◽  
pp. 1-14 ◽  
Author(s):  
Beth A. Polidoro ◽  
Cristiane T. Elfes ◽  
Jonnell C. Sanciangco ◽  
Helen Pippard ◽  
Kent E. Carpenter
Keyword(s):  
Threatened Species ◽  
Environmental Changes ◽  
Extinction Risk ◽  
Conservation Status ◽  
Marine Species ◽  
Iucn Red List ◽  
Red List ◽  
Marine Biodiversity ◽  
Conservation Priorities ◽  
Conservation Action

Given the economic and cultural dependence on the marine environment in Oceania and a rapidly expanding human population, many marine species populations are in decline and may be vulnerable to extinction from a number of local and regional threats. IUCN Red List assessments, a widely used system for quantifying threats to species and assessing species extinction risk, have been completed for 1190 marine species in Oceania to date, including all known species of corals, mangroves, seagrasses, sea snakes, marine mammals, sea birds, sea turtles, sharks, and rays present in Oceania, plus all species in five important perciform fish groups. Many of the species in these groups are threatened by the modification or destruction of coastal habitats, overfishing from direct or indirect exploitation, pollution, and other ecological or environmental changes associated with climate change. Spatial analyses of threatened species highlight priority areas for both site- and species-specific conservation action. Although increased knowledge and use of newly available IUCN Red List assessments for marine species can greatly improve conservation priorities for marine species in Oceania, many important fish groups are still in urgent need of assessment.

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