scholarly journals Variation among species in proteomic sulphur content is related to environmental conditions

2006 ◽  
Vol 273 (1591) ◽  
pp. 1293-1300 ◽  
Author(s):  
Jason G Bragg ◽  
Dominique Thomas ◽  
Peggy Baudouin-Cornu
Keyword(s):  
Elemental Composition ◽  
Environmental Conditions ◽  
Base Composition ◽  
Growth Conditions ◽  
Sulphur Content ◽  
Methionine Residues ◽  
Living Organisms

The elemental composition of proteins influences the quantities of different elements required by organisms. Here, we considered variation in the sulphur content of whole proteomes among 19 Archaea, 122 Eubacteria and 10 eukaryotes whose genomes have been fully sequenced. We found that different species vary greatly in the sulphur content of their proteins, and that average sulphur content of proteomes and genome base composition are related. Forces contributing to variation in proteomic sulphur content appear to operate quite uniformly across the proteins of different species. In particular, the sulphur content of orthologous proteins was frequently correlated with mean proteomic sulphur contents. Among prokaryotes, proteomic sulphur content tended to be greater in anaerobes, relative to non-anaerobes. Thermophiles tended to have lower proteomic sulphur content than non-thermophiles, consistent with the thermolability of cysteine and methionine residues. This work suggests that persistent environmental growth conditions can influence the evolution of elemental composition of whole proteomes in a manner that may have important implications for the amount of sulphur used by living organisms to build proteins. It extends previous studies that demonstrated links between transient changes in environmental conditions and the elemental composition of subsets of proteins expressed under these conditions.

scholarly journals Accumulation of Elements in Biodeposits on the Stone Surface in Urban Environment. Case Studies from Saint Petersburg, Russia

2020 ◽  
Vol 9 (1) ◽  
pp. 36
Author(s):  
Katerina V. Sazanova (nee Barinova) ◽  
Marina S. Zelenskaya ◽  
Vera V. Manurtdinova ◽  
Alina R. Izatulina ◽  
Aleksei V. Rusakov ◽  
...  
Keyword(s):  
Microbial Community ◽  
Optical Microscopy ◽  
Elemental Composition ◽  
Urban Environment ◽  
Microbial Metabolites ◽  
Stone Surface ◽  
Saint Petersburg ◽  
Icp Ms ◽  
Living Organisms ◽  
Selective Accumulation

The pattern of elements accumulation in biodeposits formed by living organisms and extracellular products of their metabolism (biofouling, primary soils) on different bedrocks (of the monuments of Historical necropoleis in Saint Petersburg) were studied by a complex of biological and mineralogical methods (optical microscopy, SEM, EDX, XRD, ICP MS, XRFS). The content of 46 elements in biodeposits with various communities of microorganisms is determined. The model recreating the picture of the input and selective accumulation of elements in biodeposits on the stone surface in outdoor conditions is assumed. It is shown that the main contribution to the elemental composition of biodeposits is made by the environment and the composition of the microbial community. The contribution of leaching under the action of microbial metabolites of mineral grains, entering biodeposits from the environment, is significantly greater than that of the underlying rock.

Living organisms influence on environmental conditions: pH modulation by amphibian embryos versus aluminum toxicity

Chemosphere ◽  
2015 ◽  
Vol 139 ◽  
pp. 210-215 ◽  
Author(s):  
Jorge Herkovits ◽  
Luis Alberto Castañaga ◽  
José Luis D’Eramo ◽  
Victoria Platonova Jourani
Keyword(s):  
Environmental Conditions ◽  
Aluminum Toxicity ◽  
Amphibian Embryos ◽  
Living Organisms

scholarly journals Variability in Elemental Composition of Conifer Tree Rings

2021 ◽  
pp. 24-37
Author(s):  
Vladimir L. Gavrikov ◽  
◽  
Alexey I. Fertikov ◽  
Evgenii A. Vaganov ◽  
Keyword(s):  
Elemental Composition ◽  
Tree Rings ◽  
Chemical Elements ◽  
Dimensional Space ◽  
Siberian Larch ◽  
Growth Conditions ◽  
Pinus Sibirica ◽  
Siberian Spruce ◽  
Long Term Experiment ◽  
Conifer Tree

Distribution of chemical elements in tree rings bears important information on various biogeochemical processes. In order to achieve a reliable interpretation of the information, it is necessary to know the degree of variation in the content of chemical elements both at the level of the entire species and at the level of individual trees. The research aims to determine which chemical elements have a stable distribution in the trunks of a number of conifers: Siberian spruce (Picea obovata Ledeb.), Scots pine (Pinus sylvestris L.), Siberian larch (Larix sibirica Ledeb.), and Siberian pine (Pinus sibirica Du Tour). The data for the analysis were obtained on the basis of the long-term experiment in forest growing. The experimental site was laid out in 1971–1972 in the vicinity of Krasnoyarsk by the staff of the Sukachev Institute of Forest of the Siberian Branch of the Russian Academy of Sciences. Before planting the seedlings, the soil ground was mechanically levelled, and thus, sufficiently equal growth conditions were created for all plantings. Cores with a diameter of 12 mm were sampled from three normally developing trees of each species and analyzed using modern X-ray fluorescence methods. Content relative values of elements (counts) were obtained with the Itrax Multiscanner (COX Analytical Systems). The content of elements in the tree rings was characterized by the concentration and reserve of elements. Concentration was calculated as the number of counts per 1 mm2 of the ring area; reserve was calculated as the number of counts over the entire ring area. Each of these variables was defined by the parameters of linear slope in the calendar year series and the standard deviation. The cluster analysis was performed in the 4-dimensional space of the obtained parameters. This allowed determining whether the series of element distributions from different trees and species are grouped. Three elements (Ca, Co, and P) show high stability of distribution parameters in tree rings with no regard to tree species. A number of other elements (Mn, Pb, Cl, Cr, Ni, Sr, and W) are stably grouped depending on the species. The results of the research enable to focus on the study of the elements stably distributed in the conifer trunks. For citation: Gavrikov V.L., Fertikov A.I., Sharafutdinov R.A., Vaganov E.A. Variability in Elemental Composition of Conifer Tree Rings. Lesnoy Zhurnal [Russian Forestry Journal], 2021, no. 6, pp. 24–37. DOI: 10.37482/0536-1036-2021-6-24-37

The elemental composition of bacteria: A signature of growth conditions?

1996 ◽  
Vol 33 (1-6) ◽  
pp. 3-9 ◽  
Author(s):  
Mikal Heldal ◽  
Svein Norland ◽  
Kjell Magne Fagerbakke ◽  
Frede Thingstad ◽  
Gunnar Bratbak
Keyword(s):  
Elemental Composition ◽  
Growth Conditions

scholarly journals Abiotic Stresses Shift Belowground Populus-Associated Bacteria Toward a Core Stress Microbiome

mSystems ◽  
2018 ◽  
Vol 3 (1) ◽  
Author(s):  
Collin M. Timm ◽  
Kelsey R. Carter ◽  
Alyssa A. Carrell ◽  
Se-Ran Jun ◽  
Sara S. Jawdy ◽  
...  
Keyword(s):  
Plant Growth ◽  
Environmental Conditions ◽  
Bacterial Communities ◽  
Abiotic Stresses ◽  
Growth Conditions ◽  
Plant Host ◽  
Associated Bacteria ◽  
Poplar Trees

The identification of a common “stress microbiome” indicates tightly controlled relationships between the plant host and bacterial associates and a conserved structure in bacterial communities associated with poplar trees under different growth conditions. The ability of the microbiome to buffer the plant from extreme environmental conditions coupled with the conserved stress microbiome observed in this study suggests an opportunity for future efforts aimed at predictably modulating the microbiome to optimize plant growth.

scholarly journals When Unity Is Strength: The Strategies Used by Chlamydomonas to Survive Environmental Stresses

Cells ◽  
2019 ◽  
Vol 8 (11) ◽  
pp. 1307 ◽  
Author(s):  
Félix de Carpentier ◽  
Stéphane D. Lemaire ◽  
Antoine Danon
Keyword(s):  
Environmental Conditions ◽  
Wide Spectrum ◽  
Optimal Growth ◽  
Growth Conditions ◽  
Mild Stress ◽  
Unicellular Alga ◽  
Unicellular Organism ◽  
Unicellular Green Alga ◽  
Scientific Fields ◽  
Do So

The unicellular green alga Chlamydomonas reinhardtii is a valuable model system to study a wide spectrum of scientific fields, including responses to environmental conditions. Most studies are performed under optimal growth conditions or under mild stress. However, when environmental conditions become harsher, the behavior of this unicellular alga is less well known. In this review we will show that despite being a unicellular organism, Chlamydomonas can survive very severe environmental conditions. To do so, and depending on the intensity of the stress, the strategies used by Chlamydomonas can range from acclimation to the formation of multicellular structures, or involve programmed cell death.

Development of System for High Quality Wood Grain Design

2011 ◽  
Author(s):  
Takuya Mori ◽  
Satoshi Shibasaki ◽  
Hideki Aoyama
Keyword(s):  
Computer Graphics ◽  
Tree Growth ◽  
Wood Surface ◽  
Environmental Conditions ◽  
Tree Species ◽  
Growth Conditions ◽  
High Quality ◽  
New Approach ◽  
Conventional Methods ◽  
Wood Grain

Various approaches for generating woodgrain patterns using computer graphics have been proposed so far. However, it is difficult to reproduce real woodgrain patterns using such conventional methods. In this paper, a new approach for generating woodgrain patterns is proposed. Virtual trees are generated by simulating tree growth in consideration of environmental conditions. Moreover, fine tree tissues and reflection properties at the wood surface are modeled. By applying these modeled factors, more diverse and accurate woodgrain patterns can be generated. With this approach, various types of virtual trees can be obtained by changing growth conditions such as period and location of growth or form of tissue in trees without the need to reset complicated parameters of each tree species. After this, the virtual trees can be cut at arbitrary areas, thus allowing a variety of woodgrain patterns to be generated by easy parameter setup.

scholarly journals Extreme climatic events in relation to global change and their impact on life histories

2011 ◽  
Vol 57 (3) ◽  
pp. 375-389 ◽  
Author(s):  
Juan Moreno ◽  
Anders Pape Møller
Keyword(s):  
Environmental Conditions ◽  
Life Histories ◽  
Reproductive Effort ◽  
Weather Conditions ◽  
Extreme Weather ◽  
Reproductive Failure ◽  
Adult Survival ◽  
Extreme Climatic Events ◽  
Empirical Tests ◽  
Living Organisms

Abstract Extreme weather conditions occur at an increasing rate as evidenced by higher frequency of hurricanes and more extreme precipitation and temperature anomalies. Such extreme environmental conditions will have important implications for all living organisms through greater frequency of reproductive failure and reduced adult survival. We review examples of reproductive failure and reduced survival related to extreme weather conditions. Phenotypic plasticity may not be sufficient to allow adaptation to extreme weather for many animals. Theory predicts reduced reproductive effort as a response to increased stochasticity. We predict that patterns of natural selection will change towards truncation selection as environmental conditions become more extreme. Such changes in patterns of selection may facilitate adaptation to extreme events. However, effects of selection on reproductive effort are difficult to detect. We present a number of predictions for the effects of extreme weather conditions in need of empirical tests. Finally, we suggest a number of empirical reviews that could improve our ability to judge the effects of extreme environmental conditions on life history.

scholarly journals Initiation of Biofilm Formation byPseudomonas aeruginosa 57RP Correlates with Emergence of Hyperpiliated and Highly Adherent Phenotypic Variants Deficient in Swimming, Swarming, and Twitching Motilities

2001 ◽  
Vol 183 (4) ◽  
pp. 1195-1204 ◽  
Author(s):  
Eric Déziel ◽  
Yves Comeau ◽  
Richard Villemur
Keyword(s):  
Environmental Conditions ◽  
Phase Variation ◽  
Growth Conditions ◽  
Phenotypic Traits ◽  
Liquid Cultures ◽  
Environmental Bacterium ◽  
Type Iv ◽  
Large Colony ◽  
Small Colony

ABSTRACT Pseudomonas aeruginosa is a ubiquitous environmental bacterium capable of forming biofilms on surfaces as a survival strategy. It exhibits a large variety of competition/virulence factors, such as three types of motilities: flagellum-mediated swimming, flagellum-mediated swarming, and type IV pilus-mediated twitching. A strategy frequently used by bacteria to survive changing environmental conditions is to create a phenotypically heterogeneous population by a mechanism called phase variation. In this report, we describe the characterization of phenotypic variants forming small, rough colonies that spontaneously emerged when P. aeruginosa 57RP was cultivated as a biofilm or in static liquid cultures. These small-colony (S) variants produced abundant type IV fimbriae, displayed defective swimming, swarming, and twitching motilities, and were impaired in chemotaxis. They also autoaggregated in liquid cultures and rapidly initiated the formation of strongly adherent biofilms. In contrast, the large-colony variant (parent form) was poorly adherent, homogeneously dispersed in liquid cultures, and produced scant polar fimbriae. Further analysis of the S variants demonstrated differences in a variety of other phenotypic traits, including increased production of pyocyanin and pyoverdine and reduced elastase activity. Under appropriate growth conditions, cells of each phenotype switched to the other phenotype at a fairly high frequency. We conclude that these S variants resulted from phase variation and were selectively enriched when P. aeruginosa 57RP was grown as a biofilm or in static liquid cultures. We propose that phase variation ensures the prior presence of phenotypic forms well adapted to initiate the formation of a biofilm as soon as environmental conditions are favorable.

Article Commentary: Regulation of Protein Function by Residue Oxidation

2010 ◽  
Vol 3 ◽  
pp. PRI.S3327 ◽  
Author(s):  
Xing-Hai Zhang
Keyword(s):  
Protein Function ◽  
Regulatory Mechanism ◽  
Cellular Metabolism ◽  
Life Forms ◽  
Biological Macromolecules ◽  
Oxygen Species ◽  
Cellular Processes ◽  
Methionine Residues ◽  
Living Organisms ◽  
Face Generation

A majority of extant life forms require O2 to survive and thrive. Oxidation is inevitably one of the most active cellular processes and one constant challenge that living organisms must face. Generation of oxidants including reactive oxygen species is a natural consequence of cellular metabolism of all biological systems during normal life cycle under different environments. These oxidants oxidize many biological macromolecules such as proteins and affect their functions. Oxidation of specific amino acids in proteins may cause damage to protein structure and impair function, or may also activate protein activities and promote cellular metabolism. As an example, the reversible oxidation of cysteine and methionine residues has a profound impact on protein function and cellular process. A recent study that examines the effect of Met oxidation on Ser phosphorylation in a mitochondrial enzyme, pyruvate dehydrogenase, provides another demonstration that protein oxidation is an important regulatory mechanism for organisms to deal with developmental and environmental challenges throughout life processes.

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