scholarly journals ‘Meiotic genes’ are constitutively expressed in an asexual amoeba and are not necessarily involved in sexual reproduction

2019 ◽  
Vol 15 (3) ◽  
pp. 20180871 ◽  
Author(s):  
Sutherland K. Maciver ◽  
Zisis Koutsogiannis ◽  
Alvaro de Obeso Fernández del Valle
Keyword(s):  
Homologous Recombination ◽  
Sexual Reproduction ◽  
Asexual Reproduction ◽  
Shotgun Sequencing ◽  
Ancestral State ◽  
Rna Seq ◽  
Next Generation ◽  
Related Process

The amoebae (and many other protists) have traditionally been considered as asexual organisms, but suspicion has been growing that these organisms are cryptically sexual or are at least related to sexual lineages. This contention is mainly based on genome studies in which the presence of ‘meiotic genes’ has been discovered. Using RNA-seq (next-generation shotgun sequencing, identifying and quantifying the RNA species in a sample), we have found that the entire repertoire of meiotic genes is expressed in exponentially growing Acanthamoeba and we argue that these so-called meiotic genes are involved in the related process of homologous recombination in this amoeba. We contend that they are only involved in meiosis in other organisms that indulge in sexual reproduction and that homologous recombination is important in asexual protists as a guard against the accumulation of mutations. We also suggest that asexual reproduction is the ancestral state.

Molecular basis of adaptive evolution of sperm motility involved in in vivo fertilization of terrestrial animals

Impact ◽  
2020 ◽  
Vol 2020 (6) ◽  
pp. 73-75
Author(s):  
Akihiko Watanabe
Keyword(s):  
Sexual Reproduction ◽  
Sperm Motility ◽  
Asexual Reproduction ◽  
Acrosome Reaction ◽  
Sperm Morphology ◽  
Adaptive Potential ◽  
Selective Pressures ◽  
The Face ◽  
Genetic Profiles

One of the unifying traits of life on this planet is reproduction, or life's ability to make copies of itself. The mode of reproduction has evolved over time, having almost certainly begun with simple asexual reproduction when the ancestral single celled organism divided into two. Since these beginnings' life has tried out numerous strategies, and perhaps one of the most important and successful has been sexual reproduction. This form of reproduction relies on the union of gametes, otherwise known as sperm and egg. Evolutionarily, sexual reproduction allows for greater adaptive potential because the genes of two unique individuals have a chance to recombine and mix in order to produce a new individual. Unlike asexual reproduction which produces genetically-identical clones of the parent individual, sex produces offspring with novel genes and combinations of genes. Therefore, in the face of new selective pressures there is a higher chance that one of these novel genetic profiles will produce an adaptation that is advantageous in the new circumstances. Dr Akihiko Watanabe is a reproductive biologist based in the Department of Biology, Faculty of Science Yamagata University in Japan, he is currently working on three research projects; a comparative study on the signalling pathways for inducing sperm motility and acrosome reaction in amphibians, the mechanism behind the adaptive modification of sperm morphology and motility, and the origin of sperm motility initiating substance (SMIS).

scholarly journals The Advantages of Segregation and the Evolution of Sex

Genetics ◽  
2003 ◽  
Vol 164 (3) ◽  
pp. 1099-1118 ◽  
Author(s):  
Sarah P Otto
Keyword(s):  
Sexual Reproduction ◽  
Asexual Reproduction ◽  
Deleterious Mutations ◽  
Evolution Of Sex ◽  
Beneficial Mutations ◽  
Selection Regime ◽  
Strong Selection ◽  
Genome Wide ◽  
Low Levels

AbstractIn diploids, sexual reproduction promotes both the segregation of alleles at the same locus and the recombination of alleles at different loci. This article is the first to investigate the possibility that sex might have evolved and been maintained to promote segregation, using a model that incorporates both a general selection regime and modifier alleles that alter an individual’s allocation to sexual vs. asexual reproduction. The fate of different modifier alleles was found to depend strongly on the strength of selection at fitness loci and on the presence of inbreeding among individuals undergoing sexual reproduction. When selection is weak and mating occurs randomly among sexually produced gametes, reductions in the occurrence of sex are favored, but the genome-wide strength of selection is extremely small. In contrast, when selection is weak and some inbreeding occurs among gametes, increased allocation to sexual reproduction is expected as long as deleterious mutations are partially recessive and/or beneficial mutations are partially dominant. Under strong selection, the conditions under which increased allocation to sex evolves are reversed. Because deleterious mutations are typically considered to be partially recessive and weakly selected and because most populations exhibit some degree of inbreeding, this model predicts that higher frequencies of sex would evolve and be maintained as a consequence of the effects of segregation. Even with low levels of inbreeding, selection is stronger on a modifier that promotes segregation than on a modifier that promotes recombination, suggesting that the benefits of segregation are more likely than the benefits of recombination to have driven the evolution of sexual reproduction in diploids.

scholarly journals Erratum: Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study

2014 ◽  
Vol 32 (11) ◽  
pp. 1166-1166 ◽  
Author(s):  
Sheng Li ◽  
Scott W Tighe ◽  
Charles M Nicolet ◽  
Deborah Grove ◽  
Shawn Levy ◽  
...  
Keyword(s):  
Next Generation Sequencing ◽  
Transcriptome Profiling ◽  
Rna Seq ◽  
Next Generation ◽  
Generation Sequencing

scholarly journals Influence of breeding strategy on genetic diversity of individuals

2021 ◽  
pp. 1168-1174
Author(s):  
A.A. Poroshina ◽  
◽  
D.Yu. Sherbakov ◽  
Keyword(s):  
Genetic Diversity ◽  
Computer Simulation ◽  
Molecular Evolution ◽  
Microsatellite Markers ◽  
Simulation Model ◽  
Sexual Reproduction ◽  
Asexual Reproduction ◽  
Reproductive Strategy ◽  
Breeding Strategy ◽  
Computer Simulation Model

Abstract. Using a computer simulation model, we tried to investigate how the transition from sexual reproduction to asexual reproduction will affect the population of diploid organisms with a neutral character of molecular evolution. At the same time, special attention was paid to the specificity of microsatellite markers. In this paper, we develop fast and inexpensive methods for assessing the changes in populations that occur with a change in reproductive strategy.

Ceratophyllum demersum (coontail).

2021 ◽  
Author(s):  
Hugh Dawson
Keyword(s):  
Sexual Reproduction ◽  
Asexual Reproduction ◽  
Nutrient Availability ◽  
Water Body ◽  
Water Bodies ◽  
Ceratophyllum Demersum ◽  
Aquatic Species

Abstract C. demersum is a cosmopolitan submerged aquatic species that has probably already invaded most of its potential exotic range. It has the advantages of being a perennial surviving well over-winter in deeper water and by growing both by asexual reproduction of broken or complete stems and by sexual reproduction of very many seeds. It has a wide ecological tolerance and grows relatively fast. Disturbance of the water body results in increases in growth through changes in nutrient availability but also in faster dispersal around water bodies allowing greater competition with less vigorous species.

scholarly journals Metabolism and Development during Conidial Germination in Response to a Carbon-Nitrogen-Rich Synthetic or a Natural Source of Nutrition inNeurospora crassa

mBio ◽  
2019 ◽  
Vol 10 (2) ◽  
Author(s):  
Zheng Wang ◽  
Cristina Miguel-Rojas ◽  
Francesc Lopez-Giraldez ◽  
Oded Yarden ◽  
Frances Trail ◽  
...  
Keyword(s):  
Life History ◽  
Sexual Reproduction ◽  
Nitrogen Metabolism ◽  
Asexual Reproduction ◽  
Sexual Development ◽  
Vegetative Growth ◽  
Synthetic Medium ◽  
Conidial Germination ◽  
Content Type ◽  
Genes Expression

ABSTRACTFungal spores germinate and undergo vegetative growth, leading to either asexual or sexual reproductive dispersal. Previous research has indicated that among developmental regulatory genes, expression is conserved across nutritional environments, whereas pathways for carbon and nitrogen metabolism appear highly responsive—perhaps to accommodate differential nutritive processing. To comprehensively investigate conidial germination and the adaptive life history decision-making underlying these two modes of reproduction, we profiled transcription ofNeurospora crassagerminating on two media: synthetic Bird medium, designed to promote asexual reproduction; and a natural maple sap medium, on which both asexual reproduction and sexual reproduction manifest. A later start to germination but faster development was observed on synthetic medium. Metabolic genes exhibited altered expression in response to nutrients—at least 34% of the genes in the genome were significantly downregulated during the first two stages of conidial germination on synthetic medium. Knockouts of genes exhibiting differential expression across development altered germination and growth rates, as well as in one case causing abnormal germination. A consensus Bayesian network of these genes indicated especially tight integration of environmental sensing, asexual and sexual development, and nitrogen metabolism on a natural medium, suggesting that in natural environments, a more dynamic and tentative balance of asexual and sexual development may be typical ofN. crassacolonies.IMPORTANCEOne of the most remarkable successes of life is its ability to flourish in response to temporally and spatially varying environments. Fungi occupy diverse ecosystems, and their sensitivity to these environmental changes often drives major fungal life history decisions, including the major switch from vegetative growth to asexual or sexual reproduction. Spore germination comprises the first and simplest stage of vegetative growth. We examined the dependence of this early life history on the nutritional environment using genome-wide transcriptomics. We demonstrated that for developmental regulatory genes, expression was generally conserved across nutritional environments, whereas metabolic gene expression was highly labile. The level of activation of developmental genes did depend on current nutrient conditions, as did the modularity of metabolic and developmental response network interactions. This knowledge is critical to the development of future technologies that could manipulate fungal growth for medical, agricultural, or industrial purposes.

scholarly journals Reproductive Strategies of the Seagrass Zostera japonica Under Different Geographic Conditions in Northern China

2020 ◽  
Vol 7 ◽  
Author(s):  
Shidong Yue ◽  
Xiaomei Zhang ◽  
Shaochun Xu ◽  
Yu Zhang ◽  
Peng Zhao ◽  
...  
Keyword(s):  
Sexual Reproduction ◽  
Asexual Reproduction ◽  
Reproductive Strategies ◽  
Geographic Location ◽  
Dry Weight ◽  
Northern China ◽  
Shoot Density ◽  
Zostera Japonica ◽  
Sexual And Asexual Reproduction ◽  
Density And Biomass

Seagrasses form a unique group of submerged marine angiosperms capable of both sexual and asexual reproduction. The amounts of sexual and asexual reproduction differ within some species relying on geographic location and environmental factors. Here, we studied the reproductive strategies of different geographic Zostera japonica populations, S1 and S2 at Swan Lake lagoon (SLL), and H1 and H2 at Huiquan Bay (HQB), in northern China. The duration of flowering at SLL was longer than at HQB, whereas flowering initiation at HQB occurred earlier than at SLL. In addition, the timing of seed maturation at HQB occurred earlier than at SLL. The allocation to sexual reproduction at SLL was greater than at HQB. The maximum potential seed production was greatest at S1 (22228.52 ± 8832.46 seeds ⋅ m–2), followed by S2 (21630.34 ± 9378.67 seeds ⋅ m–2), H2 (7459.60 ± 1779.33 seeds ⋅ m–2), and H1 (2821.05 ± 1280.57 seeds ⋅ m–2). The seasonal changes in total shoot density and biomass were small at HQB. There was a relatively large number of overwintering shoots at HQB because of the higher average temperature during winter. The allocation to sexual reproduction was lower than at SLL, and no seedlings were observed at HQB during our study. Thus, the population of Z. japonica at HQB was maintained by asexual reproduction. Compared with HQB, the biomass of overwintering shoots at SLL was less than 30 g dry weight ⋅ m–2. The Z. japonica at SLL relied on asexual and sexual reproduction to maintain the population. The results show the necessity of understanding local reproductive strategies before starting restoration and management projects. The study provides fundamental information and guidance for the conservation and restoration of seagrass beds.

scholarly journals Megakaryocytes differentially sort mRNAs for matrix metalloproteinases and their inhibitors into platelets: a mechanism for regulating synthetic events

Blood ◽  
2011 ◽  
Vol 118 (7) ◽  
pp. 1903-1911 ◽  
Author(s):  
Luca Cecchetti ◽  
Neal D. Tolley ◽  
Noemi Michetti ◽  
Loredana Bury ◽  
Andrew S. Weyrich ◽  
...  
Keyword(s):  
Next Generation Sequencing ◽  
Matrix Metalloproteinases ◽  
Mrna Expression ◽  
Vascular Remodeling ◽  
Differentially Express ◽  
Expression Patterns ◽  
Critical Role ◽  
Rna Seq ◽  
Next Generation ◽  
Generation Sequencing

Abstract Megakaryocytes transfer a diverse and functional transcriptome to platelets during the final stages of thrombopoiesis. In platelets, these transcripts reflect the expression of their corresponding proteins and, in some cases, serve as a template for translation. It is not known, however, if megakaryocytes differentially sort mRNAs into platelets. Given their critical role in vascular remodeling and inflammation, we determined whether megakaryocytes selectively dispense transcripts for matrix metalloproteinases (MMPs) and their tissue inhibitors (TIMPs) into platelets. Next-generation sequencing (RNA-Seq) revealed that megakaryocytes express mRNA for 10 of the 24 human MMP family members. mRNA for all of these MMPs are present in platelets with the exception of MMP-2, 14, and 15. Megakaryocytes and platelets also express mRNA for TIMPs 1-3, but not TIMP-4. mRNA expression patterns predicted the presence and, in most cases, the abundance of each corresponding protein. Nonetheless, exceptions were observed: MMP-2 protein is present in platelets but not its transcript. In contrast, quiescent platelets express TIMP-2 mRNA but only traces of TIMP-2 protein. In response to activating signals, however, platelets synthesize significant amounts of TIMP-2 protein. These results demonstrate that megakaryocytes differentially express mRNAs for MMPs and TIMPs and selectively transfer a subset of these into platelets. Among the platelet messages, TIMP-2 serves as a template for signal-dependent translation.

scholarly journals Plasmodium parasites mount an arrest response to dihydroartemisinin, as revealed by whole transcriptome shotgun sequencing (RNA-seq) and microarray study

BMC Genomics ◽  
2015 ◽  
Vol 16 (1) ◽  
Author(s):  
Philip J. Shaw ◽  
Sastra Chaotheing ◽  
Pavita Kaewprommal ◽  
Jittima Piriyapongsa ◽  
Chayaphat Wongsombat ◽  
...  
Keyword(s):  
Shotgun Sequencing ◽  
Rna Seq ◽  
Microarray Study ◽  
Whole Transcriptome
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