scholarly journals Salinized rivers: degraded systems or new habitats for salt-tolerant faunas?

2016 ◽  
Vol 12 (3) ◽  
pp. 20151072 ◽  
Author(s):  
Ben J. Kefford ◽  
David Buchwalter ◽  
Miguel Cañedo-Argüelles ◽  
Jenny Davis ◽  
Richard P. Duncan ◽  
...  
Keyword(s):  
Evolutionary History ◽  
Saline Habitats ◽  
Novel Taxa ◽  
Global Concern ◽  
The Common ◽  
Key Drivers ◽  
Lotic Environments ◽  
Flowing Waters ◽  
Freshwater Salinization ◽  
New Habitats

Anthropogenic salinization of rivers is an emerging issue of global concern, with significant adverse effects on biodiversity and ecosystem functioning. Impacts of freshwater salinization on biota are strongly mediated by evolutionary history, as this is a major factor determining species physiological salinity tolerance. Freshwater insects dominate most flowing waters, and the common lotic insect orders Ephemeroptera (mayflies), Plecoptera (stoneflies) and Trichoptera (caddisflies) are particularly salt-sensitive. Tolerances of existing taxa, rapid adaption, colonization by novel taxa (from naturally saline environments) and interactions between species will be key drivers of assemblages in saline lotic systems. Here we outline a conceptual framework predicting how communities may change in salinizing rivers. We envision that a relatively small number of taxa will be saline-tolerant and able to colonize salinized rivers (e.g. most naturally saline habitats are lentic; thus potential colonizers would need to adapt to lotic environments), leading to depauperate communities in these environments.

First North African record of a melanistic common genet (Genetta genetta Linnaeus, 1758)

Mammalia ◽  
2021 ◽  
Vol 0 (0) ◽  
Author(s):  
Mourad Ahmim ◽  
Hafid Aroudj ◽  
Farouk Aroudj ◽  
Saaid Saidi ◽  
Samir Aroudj
Keyword(s):  
North Africa ◽  
Evolutionary History ◽  
North African ◽  
Mammal Species ◽  
Genetta Genetta ◽  
History Of ◽  
The Common ◽  
True Occurrence

Abstract The common genet (Genetta genetta Linnaeus, 1758) is a rare and protected mammal species in Algeria. We report the first melanistic individual of this species ever recorded in North Africa. Such animals have only been recorded in Spain and Portugal so far. It is unclear why melanistic common genets seem to be so rare in its African range. More research is needed to determine the true occurrence of melanistic individuals, and what the evolutionary history of melanism is in common genets.

scholarly journals Unbiased estimation of linkage disequilibrium from unphased data

2019 ◽  
Author(s):  
Aaron P. Ragsdale ◽  
Simon Gravel
Keyword(s):  
Linkage Disequilibrium ◽  
Population Size ◽  
Evolutionary History ◽  
Unbiased Estimation ◽  
Sequencing Data ◽  
Unbiased Estimators ◽  
Population Size Estimates ◽  
Wide Range ◽  
The Common ◽  
Size Estimates

AbstractLinkage disequilibrium is used to infer evolutionary history and to identify regions under selection or associated with a given trait. In each case, we require accurate estimates of linkage disequilibrium from sequencing data. Unphased data presents a challenge because the co-occurrence of alleles at different loci is ambiguous. Commonly used estimators for the common statistics r2 and D2 exhibit large and variable upward biases that complicate interpretation and comparison across cohorts. Here, we show how to find unbiased estimators for a wide range of two-locus statistics, including D2, for both single and multiple randomly mating populations. These provide accurate estimates over three orders of magnitude in LD. We also use these estimators to construct an estimator for r2 that is less biased than commonly used estimators, but nevertheless argue for using rather than r2 for population size estimates.

scholarly journals The evolutionary history of the two karyotypic groups of the common shrew, Sorex araneus, in Poland

Heredity ◽  
2002 ◽  
Vol 88 (4) ◽  
pp. 235-242 ◽  
Author(s):  
M Ratkiewicz ◽  
S Fedyk ◽  
A Banaszek ◽  
L Gielly ◽  
W Chȩtnicki ◽  
...  
Keyword(s):  
Evolutionary History ◽  
Common Shrew ◽  
Sorex Araneus ◽  
History Of ◽  
The Common ◽  
Common Shrew Sorex Araneus

scholarly journals Evolutionary History and Activity of RNase H1-Like Proteins in Arabidopsis thaliana

2020 ◽  
Vol 61 (6) ◽  
pp. 1107-1119
Author(s):  
Jan Kuciński ◽  
Sebastian Chamera ◽  
Aleksandra Kmera ◽  
M Jordan Rowley ◽  
Sho Fujii ◽  
...  
Keyword(s):  
Arabidopsis Thaliana ◽  
Embryonic Development ◽  
Evolutionary History ◽  
Common Ancestor ◽  
Normal Growth ◽  
Plastid Dna ◽  
Growth Conditions ◽  
Replicative Stress ◽  
The Common ◽  
Rna:Dna Hybrids

Abstract RNase H1 is an endonuclease specific toward the RNA strand of RNA:DNA hybrids. Members of this protein family are present in most living organisms and are essential for removing RNA that base pairs with DNA. It prevents detrimental effects of RNA:DNA hybrids and is involved in several biological processes. Arabidopsis thaliana has been previously shown to contain three genes encoding RNase H1 proteins that localize to three distinct cellular compartments. We show that these genes originate from two gene duplication events. One occurred in the common ancestor of dicots and produced nuclear and organellar RNase H1 paralogs. Second duplication occurred in the common ancestor of Brassicaceae and produced mitochondrial- and plastid-localized proteins. These proteins have the canonical RNase H1 activity, which requires at least four ribonucleotides for endonucleolytic digestion. Analysis of mutants in the RNase H1 genes revealed that the nuclear RNH1A and mitochondrial RNH1B are dispensable for development under normal growth conditions. However, the presence of at least one organellar RNase H1 (RNH1B or RNH1C) is required for embryonic development. The plastid-localized RNH1C affects plastid DNA copy number and sensitivity to replicative stress. Our results present the evolutionary history of RNH1 proteins in A. thaliana, demonstrate their canonical RNase H1 activity and indicate their role in early embryonic development.

scholarly journals Tribalism Is Human Nature

2019 ◽  
Vol 28 (6) ◽  
pp. 587-592 ◽  
Author(s):  
Cory J. Clark ◽  
Brittany S. Liu ◽  
Bo M. Winegard ◽  
Peter H. Ditto
Keyword(s):  
Evolutionary History ◽  
Cognitive Biases ◽  
Meta Analysis ◽  
Human Cognition ◽  
Partisan Bias ◽  
Selective Pressures ◽  
Group Loyalty ◽  
History Of ◽  
The Common ◽  
Political Spectrum

Humans evolved in the context of intense intergroup competition, and groups comprised of loyal members more often succeeded than groups comprised of nonloyal members. Therefore, selective pressures have sculpted human minds to be tribal, and group loyalty and concomitant cognitive biases likely exist in all groups. Modern politics is one of the most salient forms of modern coalitional conflict and elicits substantial cognitive biases. The common evolutionary history of liberals and conservatives gives little reason to expect protribe biases to be higher on one side of the political spectrum than the other. This evolutionarily plausible null hypothesis has been supported by recent research. In a recent meta-analysis, liberals and conservatives showed similar levels of partisan bias, and several protribe cognitive tendencies often ascribed to conservatives (e.g., intolerance toward dissimilar other people) were found in similar degrees in liberals. We conclude that tribal bias is a natural and nearly ineradicable feature of human cognition and that no group—not even one’s own—is immune.

scholarly journals Portiera Gets Wild: Genome Instability Provides Insights into the Evolution of Both Whiteflies and Their Endosymbionts

2020 ◽  
Vol 12 (11) ◽  
pp. 2107-2124
Author(s):  
Diego Santos-Garcia ◽  
Natividad Mestre-Rincon ◽  
David Ouvrard ◽  
Einat Zchori-Fein ◽  
Shai Morin
Keyword(s):  
Evolutionary History ◽  
Common Ancestor ◽  
Genome Instability ◽  
Rare Event ◽  
Essential Amino Acids ◽  
Phylogenetic Framework ◽  
The Common ◽  
Phloem Feeding ◽  
New Framework ◽  
Time Point

Abstract Whiteflies (Hemiptera: Sternorrhyncha: Aleyrodidae) are a superfamily of small phloem-feeding insects. They rely on their primary endosymbionts "Candidatus Portiera aleyrodidarum" to produce essential amino acids not present in their diet. Portiera has been codiverging with whiteflies since their origin and therefore reflects its host’s evolutionary history. Like in most primary endosymbionts, the genome of Portiera stays stable across the Aleyrodidae superfamily after millions of years of codivergence. However, Portiera of the whitefly Bemisia tabaci has lost the ancestral genome order, reflecting a rare event in the endosymbiont evolution: the appearance of genome instability. To gain a better understanding of Portiera genome evolution, identify the time point in which genome instability appeared and contribute to the reconstruction of whitefly phylogeny, we developed a new phylogenetic framework. It targeted five Portiera genes and determined the presence of the DNA polymerase proofreading subunit (dnaQ) gene, previously associated with genome instability, and two alternative gene rearrangements. Our results indicated that Portiera gene sequences provide a robust tool for studying intergenera phylogenetic relationships in whiteflies. Using these new framework, we found that whitefly species from the Singhiella, Aleurolobus, and Bemisia genera form a monophyletic tribe, the Aleurolobini, and that their Portiera exhibit genome instability. This instability likely arose once in the common ancestor of the Aleurolobini tribe (at least 70 Ma), drawing a link between the appearance of genome instability in Portiera and the switch from multibacteriocyte to a single-bacteriocyte mode of inheritance in this tribe.

scholarly journals The evolutionary history of haptophytes and cryptophytes: phylogenomic evidence for separate origins

2012 ◽  
Vol 279 (1736) ◽  
pp. 2246-2254 ◽  
Author(s):  
Fabien Burki ◽  
Noriko Okamoto ◽  
Jean-François Pombert ◽  
Patrick J. Keeling
Keyword(s):  
Evolutionary History ◽  
Expressed Sequence Tag ◽  
Level Data ◽  
Guillardia Theta ◽  
History Of ◽  
The Common ◽  
Genome Level ◽  
Phylogenomic Analyses ◽  
New Hypothesis ◽  
Expressed Sequence

An important missing piece in the puzzle of how plastids spread across the eukaryotic tree of life is a robust evolutionary framework for the host lineages. Four assemblages are known to harbour plastids derived from red algae and, according to the controversial chromalveolate hypothesis, these all share a common ancestry. Phylogenomic analyses have consistently shown that stramenopiles and alveolates are closely related, but haptophytes and cryptophytes remain contentious; they have been proposed to branch together with several heterotrophic groups in the newly erected Hacrobia. Here, we tested this question by producing a large expressed sequence tag dataset for the katablepharid Roombia truncata , one of the last hacrobian lineages for which genome-level data are unavailable, and combined this dataset with the recently completed genome of the cryptophyte Guillardia theta to build an alignment composed of 258 genes. Our analyses strongly support haptophytes as sister to the SAR group, possibly together with telonemids and centrohelids. We also confirmed the common origin of katablepharids and cryptophytes, but these lineages were not related to other hacrobians; instead, they branch with plants. Our study resolves the evolutionary position of haptophytes, an ecologically critical component of the oceans, and proposes a new hypothesis for the origin of cryptophytes.

scholarly journals Large variation among photoreceptors as the basis of visual flexibility in the common backswimmer

2014 ◽  
Vol 281 (1795) ◽  
pp. 20141177 ◽  
Author(s):  
Esa-Ville Immonen ◽  
Irina Ignatova ◽  
Anna Gislen ◽  
Eric Warrant ◽  
Mikko Vähäsöyrinki ◽  
...  
Keyword(s):  
Microscopic Analysis ◽  
Physiological Mechanisms ◽  
Absolute Sensitivity ◽  
Prey Animal ◽  
The Common ◽  
Dim Light ◽  
Retinal Structure ◽  
Open Rhabdom ◽  
Better Than ◽  
New Habitats

The common backswimmer, Notonecta glauca , uses vision by day and night for functions such as underwater prey animal capture and flight in search of new habitats. Although previous studies have identified some of the physiological mechanisms facilitating such flexibility in the animal's vision, neither the biophysics of Notonecta photoreceptors nor possible cellular adaptations are known. Here, we studied Notonecta photoreceptors using patch-clamp and intracellular recording methods. Photoreceptor size (approximated by capacitance) was positively correlated with absolute sensitivity and acceptance angles. Information rate measurements indicated that large and more sensitive photoreceptors performed better than small ones. Our results suggest that backswimmers are adapted for vision in both dim and well-illuminated environments by having open-rhabdom eyes with large intrinsic variation in absolute sensitivity among photoreceptors, exceeding those found in purely diurnal or nocturnal species. Both electrophysiology and microscopic analysis of retinal structure suggest two retinal subsystems: the largest peripheral photoreceptors provide vision in dim light and the smaller peripheral and central photoreceptors function primarily in sunlight, with light-dependent pigment screening further contributing to adaptation in this system by dynamically recruiting photoreceptors with varying sensitivity into the operational pool.

scholarly journals Probable basal allosauroid from the early Middle Jurassic Cañadón Asfalto Formation of Argentina highlights phylogenetic uncertainty in tetanuran theropod dinosaurs

2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Oliver W. M. Rauhut ◽  
Diego Pol
Keyword(s):  
Middle Jurassic ◽  
Late Jurassic ◽  
Evolutionary History ◽  
Morphological Evolution ◽  
New Taxon ◽  
Rapid Radiation ◽  
Theropod Dinosaurs ◽  
Extinction Event ◽  
The Common ◽  
Early Radiation

AbstractTetanurae, the most successful clade of theropod dinosaurs, including modern birds, split into three major clades early in their evolutionary history: Megalosauroidea, Coelurosauria, and Allosauroidea. The oldest tetanurans occur in the earliest Middle Jurassic, but the early fossil record of the clade is still poor. Here we report one of the oldest known and most complete pre-Late Jurassic tetanuran, the probable allosauroid Asfaltovenator vialidadi gen. et sp. nov., which has an unusual character combination, uniting features currently considered to be apomorphic of different tetanuran lineages. A phylogenetic analysis resulted in a monophyletic Carnosauria (Allosauroidea + Megalosauroidea), and the inclusion of the new taxon significantly changes topology within carnosaurs. The analysis shows concentrated homoplasy in proximal nodes at the base of Tetanurae, and a temporal peak at the Pliensbachian-Toarcian extinction event, recently identified as a potential driver of tetanuran radiation. These results highlight the complex morphological evolution in the early radiation of tetanuran theropods, in which convergences and parallelisms were extremely common. This pattern seems to be a common feature in rapid radiation events of major clades of vertebrates and might explain the common difficulties to unravel phylogenetic relationships of important lineages at the base of major clades.

Architecture Design for Intelligent Vehicle Computing Platform Based on Internet of Vehicles

2012 ◽  
Vol 253-255 ◽  
pp. 1423-1426 ◽  
Author(s):  
Qiong Wang ◽  
Yan Yu ◽  
Zhen Min Tang
Keyword(s):  
Traffic Congestion ◽  
Intelligent Vehicle ◽  
Environment Pollution ◽  
Computing Technology ◽  
Internet Of Vehicles ◽  
Intelligent Computing ◽  
Computing Platform ◽  
Global Concern ◽  
The Common ◽  
Common Problems

Traffic congestion, accidents and caused environment pollution have become the common problems faced by the world. So how to improve traffic of city has become the focus of the global concern. The development of intelligent computing, Internet of Vehicles, wireless networks and so forth have provided a new idea for solving the increasing transportation issue in cities. Intelligent vehicle computing platform is key component of Internet of Vehicles. In this paper, we discussed the intelligent vehicle computing technology and proposed the architecture of intelligent vehicle computing platform.

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