scholarly journals Etiology and Host Range of a Closterovirus Associated with Plum Bark Necrosis-Stem Pitting Disease

Plant Disease ◽  
2002 ◽  
Vol 86 (4) ◽  
pp. 415-417 ◽  
Author(s):  
Diana B. Marini ◽  
Y.-P. Zhang ◽  
A. Rowhani ◽  
J. K. Uyemoto
Keyword(s):  
Prunus Persica ◽  
Prunus Avium ◽  
Molecular Size ◽  
Prunus Dulcis ◽  
Rt Pcr ◽  
Main Trunk ◽  
Prunus Salicina ◽  
Degenerate Oligonucleotide ◽  
Pcr Assays ◽  
Stem Pitting

Diseased plum (Prunus salicina) cv. Black Beaut trees developed stem gumming, severe bark necrosis, and stem pitting symptoms on the woody cylinder of the main trunk and scaffold branches. The sucker shoots of the peach (Prunus persica) cv. Nemaguard understocks exhibited oak-leaf patterns, but lacked the wood or bark markings. Other susceptible hosts included almond (Prunus dulcis), sweet (Prunus avium) and Japanese flowering (Prunus serrulata) cherries, and several plum (Prunus salicina) and prune (Prunus domestica) varieties. A purified preparation containing high molecular size dsRNAs was obtained initially from diseased cherry (P. avium × Prunus pseudocerasus) cv. Colt tissues. Healthy preparations were devoid of similar sized dsRNAs. Reverse transcriptase-polymerase chain reaction (RT-PCR) assays with degenerate oligonucleotide Closterovirus primers, designed from the HSP70 gene, were used to amplify two DNA fragments of 0.67 and 0.56 kbp. The larger cDNA product was cloned, sequenced (AF195501), and compared with other viral sequences. Depending on the number of nucleotides used in the comparisons, identities ranged from 77% for Grapevine leafroll associated virus to 3 to 44% for Little cherry virus-1. Specific primers from the 0.67 kbp cDNA sequence were designed and used in subsequent RT-PCR assays. The associated 0.67 kbp HSP70 amplicon of Plum bark necrosis-stem pitting associated virus was detected in all graft-inoculated Prunus species and varieties except prune (P. domestica var. French Improved).

scholarly journals Varietal Wealth of Prunus Species

2021 ◽  
Author(s):  
Amit Kumar ◽  
Mahendra Kumar Sharma ◽  
Tajamul Farooq Wani ◽  
Anil Sharma ◽  
Gepu Nyorak
Keyword(s):  
Prunus Persica ◽  
Prunus Avium ◽  
Sour Cherry ◽  
Prunus Dulcis ◽  
Prunus Armeniaca ◽  
Stone Fruits ◽  
Prunus Salicina ◽  
Major Species ◽  
Prunus Cerasoides ◽  
Black Beauty

Genus Prunus includes all the stone fruits (peach, nectarine, plum, apricot, almond and cherry) comprise around 98 species and classified under three subgenera namely: Amygdalus (peaches, nectraine and almonds), Prunophora (plums and apricots) and Cerasus (cherries). Genus Prunus have attained a prime position among all the temperate fruit crops as delicious edible drupe, and many species have ornamental values as well. Major species of importance are Prunus persica (peach), Prunus armeniaca (apricot), Prunus salicina (Japanese plum), Prunus domestica (European plum), Prunus americana (American plum), Prunus avium (Sweet cherry), Prunus cerasus (Sour cherry), Prunus dulcis (almond), Prunus ceracifera (Cherry plum), Prunus mira (Behmi), Prunus cerasoides (Wild Himalayan cherry), Prunus mahaleb (Mahaleb cherry) etc. Interspecific hybrids namely: plumcots, pluots and apriums also produce very delicious edible fruits. Commercial cultivars of different stone fruits are J H Hale, Cresthaven, Flordasun, Florda Prince, Elberta, Glohaven, July Elberta, Redhaven, Kanto 5, Sun Haven etc. of peaches, Fantasia, Mayfire, Red Gold, Snow Queen etc. belongs to nectarine, Turkey, Charmagz, Perfection, St. Ambroise, Royal, New Castle etc. are apricots, Santa Rosa, Black Beauty, Kelsey, Green Gage, Methley, Satsuma, Frontier, Burbank etc. are plums, Regina, Burlat, Lapins, Kordia, Stella, Bing, Van, Black Heart, Compact Lambert, Compact Stella etc. are cherries, and California Paper Shell, IXL, Mission, Nonpareil, Drake, Ne Plus Ultra, Pranyaj, Merced etc. are almonds.

scholarly journals Analysis of Double-Stranded RNAs from Cherry Trees with Stem Pitting in California

Plant Disease ◽  
1998 ◽  
Vol 82 (8) ◽  
pp. 871-874 ◽  
Author(s):  
Yun-Ping Zhang ◽  
J. K. Uyemoto ◽  
B. C. Kirkpatrick
Keyword(s):  
Sweet Cherry ◽  
Prunus Avium ◽  
Sour Cherry ◽  
Rt Pcr ◽  
Cloning And Sequencing ◽  
Green Ring ◽  
Flowering Cherry ◽  
Polymerase Chain ◽  
Stem Pitting ◽  
Dsrna Species

Five distinct dsRNA species were recovered from Bing sweet cherry (Prunus avium (L.) L.) trees with stem pitting symptoms. A 4.7-kilobase pair (kbp) dsRNA was isolated from mahaleb rootstock (P. mahaleb L.); an unrelated 4.7-kbp dsRNA, always co-purified with a 1.3-kbp dsRNA, and a 9-kbp dsRNA were from Bing cherry. In addition, an 8.5-kbp dsRNA found in diseased Shirofugen flowering cherry and in Bing cherry was identified as sour cherry green ring mottle virus (CGRMV). The larger, 8.5- and 9.0-kbp dsRNA species were graft-transmissible, while the smaller ones were non-transmissible and appeared cryptic in nature. Reverse transcription-polymerase chain reaction (RT-PCR) assays were developed for each dsRNA species by cloning and sequencing cDNA synthesized from the dsRNA templates. When several diseased collections were assayed by RT-PCR, approximately 14% reacted positively with primers for the 9.0-kbp dsRNA or CGRMV. Although CGRMV and the 9.0-kbp dsRNA caused wood-marking symptoms in graft-inoculated Mazzard (P. avium) seedling trees, no xylem or canopy symptoms developed in grafted Bing cherry. The causal agent or agents of cherry stem pitting have not been identified.

scholarly journals Resistance to Plum Pox Virus (Dideron Isolate RB3.30) in a Group of California Almonds and Transfer of Resistance to Peach

2004 ◽  
Vol 129 (4) ◽  
pp. 544-548 ◽  
Author(s):  
P. Martínez-Gómez ◽  
M. Rubio ◽  
F. Dicenta ◽  
T.M. Gradziel
Keyword(s):  
Prunus Persica ◽  
Prunus Avium ◽  
Sour Cherry ◽  
Prunus Armeniaca ◽  
Pcr Analysis ◽  
Plum Pox Virus ◽  
Rt Pcr ◽  
Resistance Transfer ◽  
High Level ◽  
Peach Rootstocks

Sharka [(plum pox virus (PPV)] mainly affects Prunus species, including apricot (Prunus armeniaca L.), peach (Prunus persica L.), plum (Prunus salicina Lindl., Prunus domestica L.), and, to a lesser degree, sweet (Prunus avium L.) and sour cherry (Prunus cerasus L.). Level of resistance to a Dideron isolate of PPV in seven California almond [P. dulcis (Miller) D.A. Webb], five processing peach cultivars, and two peach rootstocks was evaluated. In addition, almond and peach selections resulting from interspecific almond × peach hybridization and subsequent gene introgression were tested. Evaluations were conducted in controlled facilities after grafting the test genotypes onto inoculated GF305 peach rootstocks. Leaves were evaluated for PPV symptoms during three consecutive cycles of growth. ELISA-DASI and RT-PCR analysis were also employed to verify the presence or absence of PPV. Peach cultivars and rootstocks showed sharka symptoms and were ELISA-DASI or RT-PCR positive for some growth cycles, indicating their susceptibility to PPV. Almond cultivars and almond × peach hybrids did not show symptoms and were ELISA-DASI and RT-PCR negative, demonstrating resistance to PPV. Two (almond × peach) F2 selections as well as two of three backcrossed peach selections also showed a resistant behavior against the PPV-D isolate. Results demonstrate a high level of resistance in almond and indicate potential for PPV resistance transfer to commercial peach cultivars.

scholarly journals Various Freezing Strategies of Flower-bud Hardiness in Prunus

1994 ◽  
Vol 119 (3) ◽  
pp. 584-588 ◽  
Author(s):  
Sorkel A. Kadir ◽  
Edward L. Proebsting
Keyword(s):  
Prunus Persica ◽  
Prunus Dulcis ◽  
Prunus Serotina ◽  
Flower Buds ◽  
Flower Bud ◽  
Intermediate Group ◽  
Prunus Salicina ◽  
Moderate Rate ◽  
Large Flower ◽  
Prunus Davidiana

Flower buds of 20 Prunus species showed quite different strategies to cope with low temperatures. Buds of most species deep supercooled. The two hardiest species, both from the subgenus Padus (P. padus L. and P. virginiana L.), did not supercool and survived -33C with no bud kill. Prunus serotina J.F. Ehrh., also in Padus, did supercool. Prunus nigra Ait., P. americana Marsh, P. fruticosa Pall., and P. besseyi L.H. Bailey had a low minimum hardiness level (MHL), small buds, and a low water content. Exotherms were no longer detectable from the buds of these species after 2 days at -7C and some buds survived -33C. Prunus triloba Lindl. and P. japonica Thunb. were similar to that group, but no buds survived -33C. Prunus davidiana (Carriere) Franch., P. avium L., and P. domestica L. had a relatively high MHL but hardened rapidly when the buds were frozen. Prunus persica (L.) Batsch., P. subhirtella Miq., P. dulcis (Mill) D. A. Webb, and P. emarginata (Dougl. ex Hook) Walp. deep supercooled, had large flower buds and a high MHL, and were killed in the Dec. 1990 freeze. Prunus salicina Lindl., P. hortulana L.H. Bailey, P. armeniaca L., and P. tomentosa Thunb. were in an intermediate group with a moderately low MHL and a moderate rate of hardiness increase while frozen. Prunus dulcis and P. davidiana had a low chilling requirement and bloomed early, whereas P. virginiana, P. fruticosa, P. nigra, and P. domestica had high chilling requirements and bloomed late.

scholarly journals Comparison of nine different commercially available molecular assays for detection of SARS-CoV-2 RNA

2021 ◽  
Author(s):  
Ute Eberle ◽  
◽  
Clara Wimmer ◽  
Ingrid Huber ◽  
Antonie Neubauer-Juric ◽  
...  
Keyword(s):  
Real Time ◽  
Rt Pcr ◽  
Diagnostic Assays ◽  
Molecular Assays ◽  
Pcr Assays ◽  
Laboratory Experiences

AbstractTo face the COVID-19 pandemic, the need for fast and reliable diagnostic assays for the detection of SARS-CoV-2 is immense. We describe our laboratory experiences evaluating nine commercially available real-time RT-PCR assays. We found that assays differed considerably in performance and validation before routine use is mandatory.

scholarly journals Prolonged SARS-CoV-2-RNA Detection from Nasopharyngeal Swabs in an Oncologic Patient: What Impact on Cancer Treatment?

2021 ◽  
Vol 28 (1) ◽  
pp. 847-852
Author(s):  
Anna Ferrari ◽  
Marco Trevenzoli ◽  
Lolita Sasset ◽  
Elisabetta Di Liso ◽  
Toni Tavian ◽  
...  
Keyword(s):  
Lung Cancer ◽  
Cancer Treatment ◽  
Cancer Patients ◽  
Clinical Symptoms ◽  
Palliative Radiotherapy ◽  
Rt Pcr ◽  
Cancer Treatments ◽  
Global Challenge ◽  
Viral Culture ◽  
Pcr Assays

The pandemic of SARS-CoV-2 is a serious global challenge affecting millions of people worldwide. Cancer patients are at risk for infection exposure and serious complications. A prompt diagnosis of SARS-CoV-2 infection is crucial for the timely adoption of isolation measures and the appropriate management of cancer treatments. In lung cancer patients the symptoms of infection 19 may resemble those exhibited by the underlying oncologic condition, possibly leading to diagnostic overlap and delays. Moreover, cancer patients might display a prolonged positivity of nasopharyngeal RT-PCR assays for SARS-CoV-2, causing long interruptions or delay of cancer treatments. However, the association between the positivity of RT-PCR assays and the patient’s infectivity remains uncertain. We describe the case of a patient with non-small cell lung cancer, and a severe ab extrinseco compression of the trachea, whose palliative radiotherapy was delayed because of the prolonged positivity of nasopharyngeal swabs for SARS-CoV-2. The patient did not show clinical symptoms suggestive of active infection, but the persistent positivity of RT-PCR assays imposed the continuation of isolation measures and the delay of radiotherapy for over two months. Finally, the negative result of SARS-CoV-2 viral culture allowed us to verify the absence of viral activity and to rule out the infectivity of the patient, who could finally continue her cancer treatment.

scholarly journals Evaluation of Sandwich Enzyme-Linked Immunosorbent Assay and Reverse Transcription Polymerase Chain Reaction for the Diagnosis of Foot-and-Mouth Disease

Intervirology ◽  
2021 ◽  
pp. 1-6
Author(s):  
Salman Khan ◽  
Syed Asad Ali Shah ◽  
Syed Muhammad Jamal
Keyword(s):  
Polymerase Chain Reaction ◽  
Viral Genome ◽  
Foot And Mouth Disease ◽  
Enzyme Linked Immunosorbent Assay ◽  
Rt Pcr ◽  
Chain Reaction ◽  
Kappa Value ◽  
Polymerase Chain ◽  
Pcr Assays ◽  
Level Of Agreement

<b><i>Background:</i></b> Foot-and-mouth disease (FMD) is an infectious and highly contagious disease of cloven-hoofed domestic and wild animals, causing heavy economic losses to the livestock industry. Rapid and reliable diagnosis of the disease is essential for the implementation of effective control measures. This study compared sandwich enzyme-linked immunosorbent assay (S-ELISA) and conventional reverse transcription polymerase chain reaction (RT-PCR) for the diagnosis of FMD. <b><i>Methods:</i></b> A total of 60 epithelial samples from suspected cases of FMD were tested using both S-ELISA and RT-PCR assays. The level of agreement between the assays was assessed by calculating the Kappa value. <b><i>Results:</i></b> S-ELISA detected 38 (63%) samples positive for FMD virus (FMDV). Being predominant, serotype O was detected in 22 (57.9%) of the total samples tested positive, whereas 9 (23.7%) and 7 (18.4%) samples were found positive for serotypes A and Asia-1, respectively. RT-PCR detected viral genome in 51 (85%) of the samples using pan-FMDV primers set, 1F/1R. Thirty-six samples were found positive and 7 negative by both the tests. The level of agreement between the tests was assessed by calculating the Kappa value, which was found to be fair (Kappa value = 0.303 and 95% CI = 0.089; 0.517) and significant (<i>p</i> = 0.009). However, 2 samples, which were found positive on S-ELISA tested negative on RT-PCR. This may be attributed to the presence of nucleotide mismatch(es) in the primer-binding sites that may have resulted in failure of amplification of the viral genome. The serotype-specific RT-PCR assays not only confirmed serotyping results of S-ELISA but were also able to establish serotype in 9 S-ELISA-negative but pan-FMDV RT-PCR-positive samples. <b><i>Conclusions:</i></b> The RT-PCR assay contributes significantly to establishing a quick, sensitive, and definitive diagnosis of FMD in resource-constrained countries. Samples giving negative results in S-ELISA should be tested in RT-PCR for the disease detection and virus typing.

scholarly journals Quantitation of replication of the HCV genome in human livers with end-stage cirrhosis by strand-specific real-time RT-PCR assays: Methods and clinical relevance

2009 ◽  
Vol 81 (9) ◽  
pp. 1569-1575 ◽  
Author(s):  
Lan Lin ◽  
Louis Libbrecht ◽  
Jannick Verbeeck ◽  
Chris Verslype ◽  
Tania Roskams ◽  
...  
Keyword(s):  
Real Time ◽  
Clinical Relevance ◽  
Rt Pcr ◽  
Pcr Assays ◽  
Human Livers ◽  
End Stage

Validation and comparison of different end point and real time RT-PCR assays for detection and genotyping of porcine reproductive and respiratory syndrome virus

2014 ◽  
Vol 201 ◽  
pp. 79-85 ◽  
Author(s):  
Michele Drigo ◽  
Giovanni Franzo ◽  
Ilaria Belfanti ◽  
Marco Martini ◽  
Alessandra Mondin ◽  
...  
Keyword(s):  
Real Time ◽  
Respiratory Syndrome Virus ◽  
Rt Pcr ◽  
End Point ◽  
Pcr Assays

Comparison of ELISA and RT-PCR for the detection of Prunus necrotic ring spot virus and prune dwarf virus in almond (Prunus dulcis)

2003 ◽  
Vol 114 (1) ◽  
pp. 65-69 ◽  
Author(s):  
Genet Mekuria ◽  
Sunita A. Ramesh ◽  
Evita Alberts ◽  
Terry Bertozzi ◽  
Michelle Wirthensohn ◽  
...  
Keyword(s):  
Prunus Dulcis ◽  
Dwarf Virus ◽  
Rt Pcr ◽  
Spot Virus ◽  
Prune Dwarf Virus ◽  
Ring Spot
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